Seed treatments: phytotoxicity amelioration and tracer uptake

Seed treatments are used globally on a wide range of field, vegetable and ornamental seeds, for efficient early season control of insects and diseases. However, specific seed-treatment compounds may be phytotoxic and this phytotoxicity is most acute in laboratory germination tests. Several strategies have been developed to alleviate seed-treatment phytotoxicity that include spatial separation of the pesticide from the seed. This can be accomplished by the application of the active compounds at the end of pelleting or by using a two-pellet system, termed ‘smart-pill technology'. Another approach is to detoxify or adsorb the agrochemical in a standard germination test by applying a peat medium over the seeds in a roll towel or blotter test. Many new seed-treatment chemicals have systemic activity, and the efficacy of these systemic seed treatments depends on the ability of these applied chemical compounds to be absorbed, and then transported in the developing plant. The present article describes seed-coat permeability to systemic seed treatments, examined by monitoring the movement of fluorescent tracers into intact seeds during imbibition. Two moderately lipophilic, fluorescent tracers have been used - rhodamine (ionic) and coumarin (non-ionic) - which differ mainly in electrical charge. Seed-coat permeabilities of particular species have been grouped into three categories: (1) permeable to both tracers; (2) selectively permeable to only coumarin; and (3) non-permeable to both tracers. The ability of a particular compound to diffuse through the seed coat is related to the chemical nature of the seed-covering tissues and the physico-chemical properties of the compound applie

Electrical impedance spectroscopy in relation to seed viability and moisture content in snap bean (Phaseolus vulgaris L.)

A method, electrical impedance spectroscopy (EIS), is introduced to study seed viability non-destructively. Snap bean (Phaseolus vulgaris L.) seeds were studied by EIS to determine the most sensitive EIS parameter(s) and the optimal range of moisture content (MC) for separation of viable and non-viable seeds. Hydrated seeds exhibited two impedance arcs in the complex plane at the frequency range from 60 Hz to 8 MHz, and impedance spectra of viable and non-viable seeds differed. The hydrated seeds were best-modelled by an equivalent electrical circuit with two distributed circuit elements in series with a resistor (Voigt model). Moisture content and seed viability had strong effects on the EIS parameters. The most sensitive EIS parameters for detecting the differences between viable and non-viable seeds were the capacitance log(C2), the resistance R2, the resistance ratio R2/R1 and the apex ratio, which all represent specific features of the impedance spectrum. The highest differentiation in the EIS parameters between the viable and non-viable seeds occurred in partially imbibed seeds between MC of 40 and 45% (fresh weight basis

Direct optical excitation of a fullerene-incarcerated metal ion

The endohedral fullerene Er3N@C80 shows characteristic 1.5 micron photoluminescence at cryogenic temperatures associated with radiative relaxation from the crystal-field split Er3+ 4I13/2 manifold to the 4I15/2 manifold. Previous observations of this luminescence were carried out by photoexcitation of the fullerene cage states leading to relaxation via the ionic states. We present direct non-cage-mediated optical interaction with the erbium ion. We have used this interaction to complete a photoluminescence-excitation map of the Er3+ 4I13/2 manifold. This ability to interact directly with the states of an incarcerated ion suggests the possibility of coherently manipulating fullerene qubit states with light

Inter-study reproducibility of arterial spin labelling magnetic resonance imaging for measurement of renal perfusion in healthy volunteers at 3 Tesla

Background: Measurement of renal perfusion is a crucial part of measuring kidney function. Arterial spin labelling magnetic resonance imaging (ASL MRI) is a non-invasive method of measuring renal perfusion using magnetised blood as endogenous contrast. We studied the reproducibility of ASL MRI in normal volunteers.<p></p> Methods: ASL MRI was performed in healthy volunteers on 2 occasions using a 3.0 Tesla MRI scanner with flow-sensitive alternating inversion recovery (FAIR) perfusion preparation with a steady state free precession (True-FISP) pulse sequence. Kidney volume was measured from the scanned images. Routine serum and urine biochemistry were measured prior to MRI scanning.<p></p> Results: 12 volunteers were recruited yielding 24 kidneys, with a mean participant age of 44.1 ± 14.6 years, blood pressure of 136/82 mmHg and chronic kidney disease epidemiology formula estimated glomerular filtration rate (CKD EPI eGFR) of 98.3 ± 15.1 ml/min/1.73 m2. Mean kidney volumes measured using the ellipsoid formula and voxel count method were 123.5 ± 25.5 cm3, and 156.7 ± 28.9 cm3 respectively. Mean kidney perfusion was 229 ± 41 ml/min/100 g and mean cortical perfusion was 327 ± 63 ml/min/100 g, with no significant differences between ASL MRIs. Mean absolute kidney perfusion calculated from kidney volume measured during the scan was 373 ± 71 ml/min. Bland Altman plots were constructed of the cortical and whole kidney perfusion measurements made at ASL MRIs 1 and 2. These showed good agreement between measurements, with a random distribution of means plotted against differences observed. The intra class correlation for cortical perfusion was 0.85, whilst the within subject coefficient of variance was 9.2%. The intra class correlation for whole kidney perfusion was 0.86, whilst the within subject coefficient of variance was 7.1%.<p></p> Conclusions: ASL MRI at 3.0 Tesla provides a repeatable method of measuring renal perfusion in healthy subjects without the need for administration of exogenous compounds. We have established normal values for renal perfusion using ASL MRI in a cohort of healthy volunteers.<p></p&gt

Recent studies of cements and concretes by synchrotron radiation crystallographic and cognate methods

The portfolio of available synchrotron radiation techniques is increasing notably for cements and pastes. Furthermore, sometimes the terminology is confusing and an overall picture highlighting similarities and differences of related techniques was lacking. Therefore, the main objective of this work is to review recent advances in synchrotron techniques providing a comprehensive overview. This work is not intended to gather all publications in cement chemistry but to give a unified picture through selected examples. Crystallographic techniques are used for structure determination, quantitative phase analyses and microstructure characterization. These studies are not only carried out in standard conditions but synchrotron techniques are especially suited to non-ambient conditions: high temperatures and pressures, hydration, etc., and combinations. Related crystallographic techniques, like Pair Distribution Function, are being used for the analysis of ill-crystalline phase(s). Furthermore, crystallographic tools are also employed in imaging techniques including scanning diffraction microscopy and tomography and coherent diffraction imaging. Other synchrotron techniques are also reviewed including X-rays absorption spectroscopy for local structure and speciation characterizations; small angle X-ray scattering for microstructure analysis and several imaging techniques for microstructure quantification: full-field soft and hard X-ray nano-tomographies; scanning infrared spectro-microscopy; scanning transmission and fluorescence X-ray tomographies. Finally, a personal outlook is provided.I am grateful to all my coauthors, collaborators, colleagues and PhD students, for all our work together during more than two decades. I thank the University of Malaga and ALBA Synchrotron Light Source for the support and the stirring environments. I acknowledge the Spanish science funding agencies (they change the name quite often) for funding my studentship, to do the PhD and the three summer research stays at Oxford University, to the last ongoing research project. To all synchrotrons I have been allowed to enjoy carrying out experiments: SRS, ESRF, Max-Lab, DLS, APS, SLS and ALBA. Finally, this work has been supported by the Spanish MINECO through the BIA2014-57658-C2-1-R research grant

Precision Timing Measurements of PSR J1012+5307

We present results and applications of high precision timing measurements of the millisecond pulsar J1012+5307. Combining our radio observations with results based on optical observations, we derive complete 3-D velocity information for this system. Correcting for Doppler effects, we derive the intrinsic spin parameters of this pulsar and a characteristic age of 8.6 +/- 1.9 Gyr. Our upper limit for the orbital eccentricity of only 8 * 10^-7 (68% C.L.) is the smallest ever measured for a binary system. We demonstrate that this makes the pulsar an ideal laboratory to test certain aspects of alternative theories of gravitation. Our precise measurements suggest deviations from a simple pulsar spin-down timing model, which are consistent with timing noise and the extrapolation of the known behaviour of slowly rotating pulsars.Comment: 9 pages, 6 figure

Crystal structure of Mycobacterium tuberculosis FadB2 implicated in mycobacterial β-oxidation

The intracellular pathogen Mycobacterium tuberculosis is the causative agent of tuberculosis, which is a leading cause of mortality worldwide. The survival of M. tuberculosis in host macrophages through long-lasting periods of persistence depends, in part, on breaking down host cell lipids as a carbon source. The critical role of fatty-acid catabolism in this organism is underscored by the extensive redundancy of the genes implicated in β-oxidation (∼100 genes). In a previous study, the enzymology of the M. tuberculosisl-3-hydroxyacyl-CoA dehydrogenase FadB2 was characterized. Here, the crystal structure of this enzyme in a ligand-free form is reported at 2.1 Å resolution. FadB2 crystallized as a dimer with three unique dimer copies per asymmetric unit. The structure of the monomer reveals a dual Rossmann-fold motif in the N-terminal domain, while the helical C-terminal domain mediates dimer formation. Comparison with the CoA- and NAD + -bound human orthologue mitochondrial hydroxyacyl-CoA dehydrogenase shows extensive conservation of the residues that mediate substrate and cofactor binding. Superposition with the multi-catalytic homologue M. tuberculosis FadB, which forms a trifunctional complex with the thiolase FadA, indicates that FadB has developed structural features that prevent its self-association as a dimer. Conversely, FadB2 is unable to substitute for FadB in the tetrameric FadA–FadB complex as it lacks the N-terminal hydratase domain of FadB. Instead, FadB2 may functionally (or physically) associate with the enoyl-CoA hydratase EchA8 and the thiolases FadA2, FadA3, FadA4 or FadA6 as suggested by interrogation of the STRING protein-network database

The toxbox: specific DNA sequence requirements for activation of Vibrio cholerae virulence genes by ToxT

The Gram-negative, curved rod Vibrio cholerae causes the severe diarrhoeal disease cholera. The two major virulence factors produced by V. cholerae during infection are the cholera toxin (CT) and the toxin-coregulated pilus (TCP). Transcription of the genes encoding both CT and the components of the TCP is directly activated by ToxT, a transcription factor in the AraC/XylS family. ToxT binds upstream of the ctxAB genes, encoding CT, and upstream of tcpA , the first gene in a large operon encoding the components of the TCP. The DNA sequences upstream of ctxAB and tcpA that contain ToxT binding sites do not have any significant similarity other than being AT-rich. Extensive site-directed mutagenesis was performed on the region upstream of tcpA previously shown to be protected by ToxT, and we identified specific base pairs important for activation of tcpA transcription by ToxT. This genetic approach was complemented by copper-phenanthroline footprinting experiments that showed protection by ToxT of the base pairs identified as most important for transcription activation in the mutagenesis experiments. Based on this new information and on previous work, we propose the presence of a ToxT-binding motif – the ‘toxbox’– in promoters regulated by ToxT. At tcpA , two toxbox elements are present in a direct repeat configuration and both are required for activation of transcription by ToxT. The identity of only a few of the base pairs within the toxbox is important for activation by ToxT, and we term these the core toxbox elements. Lastly, we examined ToxT binding to a mutant having 5 bp inserted between the two toxboxes at tcpA and found that occupancy of both binding sites is retained regardless of the positions of the binding sites relative to each other on the face of the DNA. This suggests that ToxT binds independently as a monomer to each toxbox in the tcpA direct repeat, in accordance with what we observed previously with the inverted repeat ToxT sites between acfA and acfD .Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75755/1/j.1365-2958.2006.05053.x.pd

Supersymmetric Deformations of Type IIB Matrix Model as Matrix Regularization of N=4 SYM

We construct a $\mathcal{Q}=1$ supersymmetry and $U(1)^5$ global symmetry preserving deformation of the type IIB matrix model. This model, without orbifold projection, serves as a nonperturbative regularization for $\mathcal{N}=4$ supersymmetric Yang-Mills theory in four Euclidean dimensions. Upon deformation, the eigenvalues of the bosonic matrices are forced to reside on the surface of a hypertorus. We explicitly show the relation between the noncommutative moduli space of the deformed matrix theory and the Brillouin zone of the emergent lattice theory. This observation makes the transmutation of the moduli space into the base space of target field theory clearer. The lattice theory is slightly nonlocal, however the nonlocality is suppressed by the lattice spacing. In the classical continuum limit, we recover the $\mathcal{N}=4$ SYM theory. We also discuss the result in terms of D-branes and interpret it as collective excitations of D(-1) branes forming D3 branes.Comment: Version 2: Extended discussion of moduli space, added a referenc

Possible wormholes in a brane world

The condition R=0, where R is the four-dimensional scalar curvature, is used for obtaining a large class (with an arbitrary function of r) of static, spherically symmetric Lorentzian wormhole metrics. The wormholes are globally regular and traversable, can have throats of arbitrary size and can be both symmetric and asymmetric. These metrics may be treated as possible wormhole solutions in a brane world since they satisfy the vacuum Einstein equations on the brane where effective stress-energy is induced by interaction with the bulk gravitational field. Some particular examples are discussed.Comment: 7 pages, revtex4. Submitted to Phys. Rev.