Systems with Multiplicative Noise: Critical Behavior from KPZ Equation and Numerics

We show that certain critical exponents of systems with multiplicative noise can be obtained from exponents of the KPZ equation. Numerical simulations in 1d confirm this prediction, and yield other exponents of the multiplicative noise problem. The numerics also verify an earlier prediction of the divergence of the susceptibility over an entire range of control parameter values, and show that the exponent governing the divergence in this range varies continuously with control parameter.Comment: Four pages (In Revtex format) with 4 figures (in Postcript

Finite size scaling in the solar wind magnetic field energy density as seen by WIND

Statistical properties of the interplanetary magnetic field fluctuations can provide an important insight into the solar wind turbulent cascade. Recently, analysis of the Probability Density Functions (PDF) of the velocity and magnetic field fluctuations has shown that these exhibit non-Gaussian properties on small time scales while large scale features appear to be uncorrelated. Here we apply the finite size scaling technique to explore the scaling of the magnetic field energy density fluctuations as seen by WIND. We find a single scaling sufficient to collapse the curves over the entire investigated range. The rescaled PDF follow a non Gaussian distribution with asymptotic behavior well described by the Gamma distribution arising from a finite range Lévy walk. Such mono scaling suggests that a Fokker-Planck approach can be applied to study the PDF dynamics. These results strongly suggest the existence of a common, nonlinear process on the time scale up to 26 hours

Period Stabilization in the Busse-Heikes Model of the Kuppers-Lortz Instability

The Busse-Heikes dynamical model is described in terms of relaxational and nonrelaxational dynamics. Within this dynamical picture a diverging alternating period is calculated in a reduced dynamics given by a time-dependent Hamiltonian with decreasing energy. A mean period is calculated which results from noise stabilization of a mean energy. The consideration of spatial-dependent amplitudes leads to vertex formation. The competition of front motion around the vertices and the Kuppers-Lortz instability in determining an alternating period is discussed.Comment: 28 pages, 11 figure

Real-time DNA microarray analysis

We present a quantification method for affinity-based DNA microarrays which is based on the real-time measurements of hybridization kinetics. This method, i.e. real-time DNA microarrays, enhances the detection dynamic range of conventional systems by being impervious to probe saturation in the capturing spots, washing artifacts, microarray spot-to-spot variations, and other signal amplitude-affecting non-idealities. We demonstrate in both theory and practice that the time-constant of target capturing in microarrays, similar to all affinity-based biosensors, is inversely proportional to the concentration of the target analyte, which we subsequently use as the fundamental parameter to estimate the concentration of the analytes. Furthermore, to empirically validate the capabilities of this method in practical applications, we present a FRET-based assay which enables the real-time detection in gene expression DNA microarrays

Noise induced transition from an absorbing phase to a regime of stochastic spatiotemporal intermittency

We introduce a stochastic partial differential equation capable of reproducing the main features of spatiotemporal intermittency (STI). Additionally the model displays a noise induced transition from laminarity to the STI regime. We show by numerical simulations and a mean-field analysis that for high noise intensities the system globally evolves to a uniform absorbing phase, while for noise intensities below a critical value spatiotemporal intermittence dominates. A quantitative computation of the loci of this transition in the relevant parameter space is presented.Comment: 4 pages, 6 eps figures. Submitted to Phys. Rev. Lett. See for additional information http://imedea.uib.es

Noise Filtering Strategies of Adaptive Signaling Networks: The Case of E. Coli Chemotaxis

Two distinct mechanisms for filtering noise in an input signal are identified in a class of adaptive sensory networks. We find that the high frequency noise is filtered by the output degradation process through time-averaging; while the low frequency noise is damped by adaptation through negative feedback. Both filtering processes themselves introduce intrinsic noises, which are found to be unfiltered and can thus amount to a significant internal noise floor even without signaling. These results are applied to E. coli chemotaxis. We show unambiguously that the molecular mechanism for the Berg-Purcell time-averaging scheme is the dephosphorylation of the response regulator CheY-P, not the receptor adaptation process as previously suggested. The high frequency noise due to the stochastic ligand binding-unbinding events and the random ligand molecule diffusion is averaged by the CheY-P dephosphorylation process to a negligible level in E.coli. We identify a previously unstudied noise source caused by the random motion of the cell in a ligand gradient. We show that this random walk induced signal noise has a divergent low frequency component, which is only rendered finite by the receptor adaptation process. For gradients within the E. coli sensing range, this dominant external noise can be comparable to the significant intrinsic noise in the system. The dependence of the response and its fluctuations on the key time scales of the system are studied systematically. We show that the chemotaxis pathway may have evolved to optimize gradient sensing, strong response, and noise control in different time scalesComment: 15 pages, 4 figure

On the nature of different types of absorbing states

We present a comparison of three different types of Langevin equation exhibiting absorbing states: the Langevin equation defining the Reggeon field theory, one with multiplicative noise, and a third type in which the noise is complex. Each one is found to describe a different underlying physical mechanism; in particular, the nature of the different absorbing states depends on the type of noise considered. By studying the stationary single-site effective potential, we analyze the impossibility of finding a reaction-diffusion model in the multiplicative noise universality class. We also discuss some theoretical questions related to the nature of complex noise, as for example, whether it is necessary or not to consider a complex equation in order to describe processes as the annihilation reaction, $A +A \to 0$.Comment: 7 figures, Latex fil

Recent results on multiplicative noise

Recent developments in the analysis of Langevin equations with multiplicative noise (MN) are reported. In particular, we: (i) present numerical simulations in three dimensions showing that the MN equation exhibits, like the Kardar-Parisi-Zhang (KPZ) equation both a weak coupling fixed point and a strong coupling phase, supporting the proposed relation between MN and KPZ; (ii) present dimensional, and mean field analysis of the MN equation to compute critical exponents; (iii) show that the phenomenon of the noise induced ordering transition associated with the MN equation appears only in the Stratonovich representation and not in the Ito one, and (iv) report the presence of a new first-order like phase transition at zero spatial coupling, supporting the fact that this is the minimum model for noise induced ordering transitions.Comment: Some improvements respect to the first versio

Nonequilibrium wetting

When a nonequilibrium growing interface in the presence of a wall is considered a nonequilibrium wetting transition may take place. This transition can be studied trough Langevin equations or discrete growth models. In the first case, the Kardar-Parisi-Zhang equation, which defines a very robust universality class for nonequilibrium moving interfaces, with a soft-wall potential is considered. While in the second, microscopic models, in the corresponding universality class, with evaporation and deposition of particles in the presence of hard-wall are studied. Equilibrium wetting is related to a particular case of the problem, it corresponds to the Edwards-Wilkinson equation with a potential in the continuum approach or to the fulfillment of detailed balance in the microscopic models. In this review we present the analytical and numerical methods used to investigate the problem and the very rich behavior that is observed with them.Comment: Review, 36 pages, 16 figure

Effects of Fluctuations on Propagating Fronts

Propagating fronts are seen in varieties of non-equilibrium pattern forming systems in Physics, Chemistry and Biology. In the last two decades, many researchers have contributed to the understanding of the underlying dynamics of the propagating fronts. Of these, the deterministic and mean-field dynamics of the fronts were mostly understood in late 1980s and 1990s. On the other hand, although the earliest work on the effect of fluctuations on propagating fronts dates back to early 1980s, the subject of fluctuating fronts did not reach its adolescence until the mid 1990s. From there onwards the last few years witnessed a surge in activities in the effect of fluctuations on propagating fronts. Scores of papers have been written on this subject since then, contributing to a significant maturity of our understanding, and only recently a full picture of fluctuating fronts has started to emerge. This review is an attempt to collect all the works on fluctuating (propagating) fronts in a coherent and cogent manner in proper perspective. It is based on the idea of making our knowledge in this field available to a broader audience, and it is also expected to help to collect bits and pieces of loose thread-ends together for possible further investigation.Comment: Review article, minor changes, references updated, 114 pages, 37 figures, to appear in Physics Report