Spatial variability in iron nutritional status of large diatoms in the Sea of Okhotsk with special reference to the Amur River discharge

The Sea of Okhotsk is known as one of the most biologically productive regions among the world's oceans, and its productivity is supported in part by the discharge of iron (Fe)-rich water from the Amur River. However, little is known about the effect of riverine-derived Fe input on the physiology of the large diatoms which often flourish in surface waters of the productive continental shelf region. We conducted diatom-specific immunochemical ferredoxin (Fd) and flavodoxin (Fld) assays in order to investigate the spatial variability of Fe nutritional status in the microplankton-sized (20–200 μm; hereafter micro-sized) diatoms. The Fd index, defined as the proportion of Fd to the sum of Fd plus Fld accumulations in the cells, was used to assess their Fe nutritional status. Additionally, active chlorophyll fluorescence measurements using pulse–amplitude-modulated (PAM) fluorometry were carried out to obtain the maximum photochemical quantum efficiency (<i>F</i>_v/<i>F</i>_m) of photosystem II for the total micro-sized phytoplankton assemblages including diatoms. During our observations in the summer of 2006, the micro-sized diatoms were relatively abundant (> 10 μg C L^&minus;1) in the neritic region, and formed a massive bloom in Sakhalin Bay near the mouth of the Amur River. Values of the Fd index and <i>F</i>_v/<i>F</i>_m were high (>0.9 and >0.65, respectively) near the river mouth, indicating that Fe was sufficient for growth of the diatoms. However, in oceanic waters of the Sea of Okhotsk, the diatom Fd index declined as cellular Fld accumulation increased. These results suggest that there was a distinct gradient in Fe nutritional status in the micro-sized diatoms from near the Amur River mouth to open waters in the Sea of Okhotsk. A significant correlation between dissolved Fe (D-Fe) concentration and the Fd index was found in waters off Sakhalin Island, indicating that D-Fe was a key factor for the photophysiology of this diatom size class. In the vicinity of the Kuril Islands between the Sea of Okhotsk and the Pacific Ocean, micro-sized diatoms only accumulated Fld (i.e., Fd index = 0), despite strong vertical mixing consistent with elevated surface D-Fe levels (>0.4 nM). Since higher Fe quotas are generally required for diatoms growing under low-light conditions, the micro-sized diatoms off the Kuril Islands possibly encountered Fe and light co-limitations. The differential expressions of Fd and Fld in micro-sized diatoms helped us to understand how these organisms respond to Fe availability in the Sea of Okhotsk in connection with the Amur River discharge

Responses of phytoplankton assemblages to iron availability and mixing water masses during the spring bloom in the Oyashio region, NW Pacific

Spring phytoplankton blooms play a major role in the carbon biogeochemical cycle of the Oyashio region, western subarctic Pacific, where the seasonal biological drawdown effect on seawater pCO 2 is one of the greatest among the world\u27s oceans. However, the bloom often terminates before depleting macronutrients, and the initiation and magnitude of the bloom is heterogeneous. We conducted a high resolution taxonomic and physiological assessment of phytoplankton in relation to the different physicochemical water masses of Coastal Oyashio Water (COW), Oyashio water (OYW), and modified Kuroshio water (MKW) in the Oyashio region from April to June 2007. Massive diatom blooms were found in April. Then, chlorophyll a concentration, cell abundance of diatom taxa, and the maximum photosystem II photochemical efficiency (F v /F m ) were positively correlated with the mixing ratios of COW, suggesting that the spring bloom in April was strongly affected by the intrusion of COW. In the OYW, intensive blooms occurred from the middle of May under low dissolved iron (DFe) concentration (\u3c 0.26 nM). Redundancy analysis showed that while diatom blooms accompanied by COW were related to DFe concentration, this was not the case in the OYW. These results indicated that diatoms in the OYW possess different iron adaptation strategies compared with diatoms in the water masses affected by COW. This led to the spatial heterogeneity of the Oyashio spring bloom. The results presented here demonstrate that water mass characterization with detailed assessments of phytoplankton taxonomy and physiological status can improve our understanding of marine ecosystems

Synoptic relationships between surface Chlorophyll-<i>a</i> and diagnostic pigments specific to phytoplankton functional types

Error-quantified, synoptic-scale relationships between chlorophyll-<i>a</i> (Chl-<i>a</i>) and phytoplankton pigment groups at the sea surface are presented. A total of ten pigment groups were considered to represent three Phytoplankton Size Classes (PSCs, micro-, nano- and picoplankton) and seven Phytoplankton Functional Types (PFTs, i.e. diatoms, dinoflagellates, green algae, prymnesiophytes (haptophytes), pico-eukaryotes, prokaryotes and <i>Prochlorococcus</i> sp.). The observed relationships between Chl-<i>a</i> and PSCs/PFTs were well-defined at the global scale to show that a community shift of phytoplankton at the basin and global scales is reflected by a change in Chl-<i>a</i> of the total community. Thus, Chl-<i>a</i> of the total community can be used as an index of not only phytoplankton biomass but also of their community structure. Within these relationships, we also found non-monotonic variations with Chl-<i>a</i> for certain pico-sized phytoplankton (pico-eukaryotes, Prokaryotes and <i>Prochlorococcus</i> sp.) and nano-sized phytoplankton (Green algae, prymnesiophytes). The relationships were quantified with a least-square fitting approach in order to enable an estimation of the PFTs from Chl-<i>a</i> where PFTs are expressed as a percentage of the total Chl-<i>a</i>. The estimated uncertainty of the relationships depends on both PFT and Chl-<i>a</i> concentration. Maximum uncertainty of 31.8% was found for diatoms at Chl-<i>a</i> = 0.49 mg m⁻³. However, the mean uncertainty of the relationships over all PFTs was 5.9% over the entire Chl-<i>a</i> range observed in situ (0.02 &lt; Chl-<i>a</i> &lt; 4.26 mg m^&minus;3). The relationships were applied to SeaWiFS satellite Chl-<i>a</i> data from 1998 to 2009 to show the global climatological fields of the surface distribution of PFTs. Results show that microplankton are present in the mid and high latitudes, constituting only ~10.9% of the entire phytoplankton community in the mean field for 1998–2009, in which diatoms explain ~7.5%. Nanoplankton are ubiquitous throughout the global surface oceans, except the subtropical gyres, constituting ~45.5%, of which prymnesiophytes (haptophytes) are the major group explaining ~31.7% while green algae contribute ~13.9%. Picoplankton are dominant in the subtropical gyres, but constitute ~43.6% globally, of which prokaryotes are the major group explaining ~26.5% (<i>Prochlorococcus</i> sp. explaining 22.8%), while pico-eukaryotes explain ~17.2% and are relatively abundant in the South Pacific. These results may be of use to evaluate global marine ecosystem models

Primary Production, an Index of Climate Change in the Ocean: Satellite-Based Estimates over Two Decades

Primary production by marine phytoplankton is one of the largest fluxes of carbon on our planet. In the past few decades, considerable progress has been made in estimating global primary production at high spatial and temporal scales by combining in situ measurements of primary production with remote-sensing observations of phytoplankton biomass. One of the major challengesinthisapproachliesintheassignmentoftheappropriatemodelparametersthatdefinethe photosynthetic response of phytoplankton to the light field. In the present study, a global database of in situ measurements of photosynthesis versus irradiance (P-I) parameters and a 20-year record of climatequalitysatelliteobservationswereusedtoassessglobalprimaryproductionanditsvariability with seasons and locations as well as between years. In addition, the sensitivity of the computed primaryproductiontopotentialchangesinthephotosyntheticresponseofphytoplanktoncellsunder changing environmental conditions was investigated. Global annual primary production varied from 38.8 to 42.1 Gt C yr−1 over the period of 1998–2018. Inter-annual changes in global primary production did not follow a linear trend, and regional differences in the magnitude and direction of change in primary production were observed. Trends in primary production followed directly from changes in chlorophyll-a and were related to changes in the physico-chemical conditions of the water column due to inter-annual and multidecadal climate oscillations. Moreover, the sensitivity analysis in which P-I parameters were adjusted by±1 standard deviation showed the importance of accurately assigning photosynthetic parameters in global and regional calculations of primary production. TheassimilationnumberoftheP-Icurveshowedstrongrelationshipswithenvironmental variables such as temperature and had a practically one-to-one relationship with the magnitude of change in primary production. In the future, such empirical relationships could potentially be used for a more dynamic assignment of photosynthetic rates in the estimation of global primary production. RelationshipsbetweentheinitialslopeoftheP-Icurveandenvironmentalvariableswere more elusive

Genetic variants in mannose receptor gene (MRC1) confer susceptibility to increased risk of sarcoidosis

<p>Abstract</p> <p>Background</p> <p>Mannose receptor (MR) is a member of the C-type lectin receptor family involved in pathogen molecular-pattern recognition and thought to be critical in shaping host immune response. The aim of this study was to investigate potential associations of genetic variants in the <it>MRC1 </it>gene with sarcoidosis.</p> <p>Methods</p> <p>Nine single nucleotide polymorphisms (SNPs), encompassing the <it>MRC1 </it>gene, were genotyped in a total of 605 Japanese consisting of 181 sarcoidosis patients and 424 healthy controls.</p> <p>Results</p> <p>Suggestive evidence of association between rs691005 SNP and risk of sarcoidosis was observed independent of sex and age in a recessive model (<it>P </it>= 0.001).</p> <p>Conclusions</p> <p>These results suggest that <it>MRC1 </it>is an important candidate gene for sarcoidosis. This is the first study to imply that genetic variants in <it>MRC1</it>, a major member of the C-type lectin, contribute to the development of sarcoidosis.</p

Primary production, an index of climate change in the ocean: Satellite-based estimates over two decades

© 2020 by the authors. Primary production by marine phytoplankton is one of the largest fluxes of carbon on our planet. In the past few decades, considerable progress has been made in estimating global primary production at high spatial and temporal scales by combining in situ measurements of primary production with remote-sensing observations of phytoplankton biomass. One of the major challenges in this approach lies in the assignment of the appropriate model parameters that define the photosynthetic response of phytoplankton to the light field. In the present study, a global database of in situ measurements of photosynthesis versus irradiance (P-I) parameters and a 20-year record of climate quality satellite observations were used to assess global primary production and its variability with seasons and locations as well as between years. In addition, the sensitivity of the computed primary production to potential changes in the photosynthetic response of phytoplankton cells under changing environmental conditions was investigated. Global annual primary production varied from 38.8 to 42.1 Gt C yr-1 over the period of 1998-2018. Inter-annual changes in global primary production did not follow a linear trend, and regional differences in the magnitude and direction of change in primary production were observed. Trends in primary production followed directly from changes in chlorophyll-a and were related to changes in the physico-chemical conditions of the water column due to inter-annual and multidecadal climate oscillations. Moreover, the sensitivity analysis in which P-I parameters were adjusted by ±1 standard deviation showed the importance of accurately assigning photosynthetic parameters in global and regional calculations of primary production. The assimilation number of the P-I curve showed strong relationships with environmental variables such as temperature and had a practically one-to-one relationship with the magnitude of change in primary production. In the future, such empirical relationships could potentially be used for a more dynamic assignment of photosynthetic rates in the estimation of global primary production. Relationships between the initial slope of the P-I curve and environmental variables were more elusive

IOCCG Ocean Optics and Biogeochemistry Protocols for Satellite Ocean Colour Sensor Validation Volume 7.0. Aquatic Primary Productivity Field Protocols for Satellite Validation and Model Synthesis. (IOCCG Protocols Series, Volume 7.0). DOI: http://dx.doi.org/10.25607/OBP-1835

In 2018, a working group sponsored by the NASA Plankton, Aerosol, Cloud, and ocean Ecosystem (PACE) project, in conjunction with the International Ocean Colour Coordinating Group (IOCCG), European Organization for the Exploitation of Meteorological Satellites (EUMETSAT), and Japan Aerospace Exploration Agency (JAXA), was assembled with the aim to develop community consensus on multiple methods for measuring aquatic primary productivity used for satellite validation and model synthesis. A workshop to commence the working group efforts was held December 5–7, 2018, at the University Space Research Association headquarters in Columbia, MD, USA, bringing together 26 active researchers from 16 institutions. In this document, we discuss and develop the workshop findings as they pertain to primary productivity measurements, including the essential issues, nuances, definitions, scales, uncertainties, and ultimately best practices for data collection across multiple methodologies

Community composition and photophysiology of phytoplankton assemblages in coastal Oyashio waters of the western North Pacific during early spring

Globally, the western subarctic Pacific is known as the region with the largest seasonal drawdown in the partial pressure of CO2 due to biological activity, i.e., high spring primary production and particulate organic carbon flux. These distinctive features are mainly caused by intense spring diatom blooms in coastal Oyashio (COY) and Oyashio (OY) waters. Although phytoplankton assemblages in OY waters are rather well studied, little is known about COY waters. In this study, photophysiological properties and phytoplankton community composition in COY waters were investigated during the pre-bloom and bloom periods from March to April 2015. Next-generation sequencing targeting the 18S rRNA gene revealed that the diatom Thalassiosira generally dominated the phytoplankton community and showed distinct differences in the diatom communities in shelf and offshore waters of the COY. Additionally, the relative contribution of Thalassiosira to the total diatom assemblages showed a positive correlation with maximum photosynthetic rates (PBmax) occurring throughout this study. Chlorophyll a concentration and primary productivity were also positively correlated with sea surface temperature, suggesting that temperature was a critical factor for bloom development. Short-term on-deck incubation experiments were carried out to examine the role of temperature in determining planktonic photosynthetic processes. Our results showed an increase in PBmax with rising temperature in assemblages from the shelf COY waters. Similarly, transcription levels of the diatom-specific rbcL gene, which encodes the large subunit of RuBisCO, also increased with rising temperature in the shelf assemblages. In contrast, temperature had little effect on the maximum photochemical quantum efficiency (Fv/Fm) of photosystem II. The results suggested that the transcription activity of the diatom-specific rbcL gene was upregulated by the increase in temperature, and that led to the higher PBmax values and the spring diatom bloom in the shelf COY region

Accuracy and cost- and time-effectiveness of digital clip versus videotape interpretation of echocardiograms in patients with valvular disease

Background. Although digital and videotaped images are known to be comparable for the evaluation of left ventricular function, their relative accuracy for assessment of more complex anatomy is unclear. We sought to compare reading time, storage costs, and concordance of video and digital interpretations across multiple observers and sites. Methods. One hundred one patients with valvular (90 mitral, 48 aortic, 80 tricuspid) disease were selected prospectively, and studies were stored according to video and standardized digital protocols. The same reviewer interpreted video and digital images independently and at different times with the use of a standard report form to evaluate 40 items (eg, severity of stenosis or regurgitation, leaflet thickening, and calcification) as normal or mildly, moderately, or severely abnormal Concordance between modalities was expressed at kappa Major discordance (difference of &gt;1 level of severity) was ascribed to the modality that gave the lesser severity. CD-ROM was used to store digital data (20:1 lossy compression), and super-VHS video-tape was used to store video data The reading time and storage costs for each modality were compared Results. Measured parameters were highly concordant (ejection fraction was 52% +/- 13% by both). Major discordance was rare, and lesser values were reported with digital rather than video interpretation in the categories of aortic and mitral valve thicken ing (1% to 2%) and severity of mitral regurgitation (2%). Digital reading time was 6.8 +/- 2.4 minutes, 38% shorter than with video (11.0 +/- 3.0, range 8 to 22 minutes, P &lt; .001). Compressed digital studies had an average size of 60 &lt;plus/minus&gt; 14 megabytes (range 26 to 96 megabytes). Storage cost for video was A$0.62 per patient (18 studies per tape, total cost A$11.20), compared with A$0.31 per patient for digital storage (8 studies per CD-ROM, total cost A$2.50). Conclusion. Digital and video interpretation were highly concordant; in the few cases of major discordance, the digital scores were lower, perhaps reflecting undersampling. Use of additional views and longer clips may be indicated to minimize discordance with video in patients with complex problems. Digital interpretation offers a significant reduction in reading times and the cost of archiving