Three dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image based modelling

We demonstrate the application of a high-resolution X-ray Computed Tomography (CT) method to quantify water distribution in soil pores under successive reductive drying. We focus on the wet end of the water release characteristic (WRC) (0 to -75 kPa) to investigate changes in soil water distribution in contrasting soil textures (sand and clay) and structures (sieved and field structured), to determine the impact of soil structure on hydraulic behaviour. The 3D structure of each soil was obtained from the CT images (at a 10 µm resolution). Stokes equations for flow were solved computationally for each measured structure to estimate hydraulic conductivity. The simulated values obtained compared extremely well with the measured saturated hydraulic conductivity values. By considering different sample sizes we were able to identify that the smallest possible representative sample size which is required to determine a globally valid hydraulic conductivity

The role of plant species and soil condition in the structural development of the rhizosphere

© 2019 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd Roots naturally exert axial and radial pressures during growth, which alter the structural arrangement of soil at the root–soil interface. However, empirical models suggest soil densification, which can have negative impacts on water and nutrient uptake, occurs at the immediate root surface with decreasing distance from the root. Here, we spatially map structural gradients in the soil surrounding roots using non-invasive imaging, to ascertain the role of root growth in early stage formation of soil structure. X-ray computed tomography provided a means not only to visualize a root system in situ and in 3-D but also to assess the precise root-induced alterations to soil structure close to, and at selected distances away from the root–soil interface. We spatially quantified the changes in soil structure generated by three common but contrasting plant species (pea, tomato, and wheat) under different soil texture and compaction treatments. Across the three plant types, significant increases in porosity at the immediate root surface were found in both clay loam and loamy sand soils and not soil densification, the currently assumed norm. Densification of the soil was recorded, at some distance away from the root, dependent on soil texture and plant type. There was a significant soil texture×bulk density×plant species interaction for the root convex hull, a measure of the extent to which root systems explore the soil, which suggested pea and wheat grew better in the clay soil when at a high bulk density, compared with tomato, which preferred lower bulk density soils. These results, only revealed by high resolution non-destructive imagery, show that although the root penetration mechanisms can lead to soil densification (which could have a negative impact on growth), the immediate root–soil interface is actually a zone of high porosity, which is very important for several key rhizosphere processes occurring at this scale including water and nutrient uptake and gaseous diffusion

A Nonlinear Force-Free Magnetic Field Approximation Suitable for Fast Forward-Fitting to Coronal Loops. I. Theory

We derive an analytical approximation of nonlinear force-free magnetic field solutions (NLFFF) that can efficiently be used for fast forward-fitting to solar magnetic data, constrained either by observed line-of-sight magnetograms and stereoscopically triangulated coronal loops, or by 3D vector-magnetograph data. The derived NLFFF solutions provide the magnetic field components $B_x({\bf x})$, $B_y({\bf x})$, $B_z({\bf x})$, the force-free parameter $\alpha({\bf x})$, the electric current density ${\bf j}({\bf x})$, and are accurate to second-order (of the nonlinear force-free $\alpha$-parameter). The explicit expressions of a force-free field can easily be applied to modeling or forward-fitting of many coronal phenomena.Comment: Solar Physics (in press), 26 pages, 11 figure

The application of X-ray micro Computed Tomography imaging for tracing particle movement in soil

Despite significant advances in recent years in the application of sensing and imaging technologies to the study of the hydraulic behaviour of soils, our understanding of how solutes and particulate matter move through soil is still limited and often based on idealised soil structures. The aim of this work was to use an appropriate proxy material, in this case (Decabromodiphenyl ether (DBDE)), to represent 1–2 μm sized chemical particles, frequently used in agricultural practices, in order to trace their spatial and temporal movement through a soil column. X-ray Computed Tomography (CT) was employed to map the 3D pore geometry and facilitate visualization of the concentration distribution of the highly X-ray attenuating proxy material as it was applied and subsequently leached through the soil over a 5 hour period. Simultaneously the soil eluate was collected from the bottom of each column and the concentration of proxy material measured using gas chromatography to compare with the imaged data. The method developed for visualizing the tracer material in 3D at the pore-scale was successful. The results demonstrated that the tracer material initially moved rapidly through the upper portion of the soil but subsequently became immobile, despite repeated elution with water as confirmed by imagery. Similar concentrations to those applied to the soil surface were not recorded at any point in time towards the bottom of the soil column. By visualizing the DBDE distribution in 3D it was possible to correlate the highest concentrations of the tracer material with the location of the smaller size pores (i.e. mesopores). Dynamic X-ray CT imaging of tracer materials has considerable potential as a proxy for the visualization of particulate agricultural chemicals that will assist with understanding how their transport behaviour varies both spatially and temporally

Homologous Flares and Magnetic Field Topology in Active Region NOAA 10501 on 20 November 2003

We present and interpret observations of two morphologically homologous flares that occurred in active region (AR) NOAA 10501 on 20 November 2003. Both flares displayed four homologous H-alpha ribbons and were both accompanied by coronal mass ejections (CMEs). The central flare ribbons were located at the site of an emerging bipole in the center of the active region. The negative polarity of this bipole fragmented in two main pieces, one rotating around the positive polarity by ~ 110 deg within 32 hours. We model the coronal magnetic field and compute its topology, using as boundary condition the magnetogram closest in time to each flare. In particular, we calculate the location of quasiseparatrix layers (QSLs) in order to understand the connectivity between the flare ribbons. Though several polarities were present in AR 10501, the global magnetic field topology corresponds to a quadrupolar magnetic field distribution without magnetic null points. For both flares, the photospheric traces of QSLs are similar and match well the locations of the four H-alpha ribbons. This globally unchanged topology and the continuous shearing by the rotating bipole are two key factors responsible for the flare homology. However, our analyses also indicate that different magnetic connectivity domains of the quadrupolar configuration become unstable during each flare, so that magnetic reconnection proceeds differently in both events.Comment: 24 pages, 10 figures, Solar Physics (accepted

4pi Models of CMEs and ICMEs

Coronal mass ejections (CMEs), which dynamically connect the solar surface to the far reaches of interplanetary space, represent a major anifestation of solar activity. They are not only of principal interest but also play a pivotal role in the context of space weather predictions. The steady improvement of both numerical methods and computational resources during recent years has allowed for the creation of increasingly realistic models of interplanetary CMEs (ICMEs), which can now be compared to high-quality observational data from various space-bound missions. This review discusses existing models of CMEs, characterizing them by scientific aim and scope, CME initiation method, and physical effects included, thereby stressing the importance of fully 3-D ('4pi') spatial coverage.Comment: 14 pages plus references. Comments welcome. Accepted for publication in Solar Physics (SUN-360 topical issue

Mesophyll porosity is modulated by the presence of functional stomata

The formation of stomata and leaf mesophyll airspace must be coordinated to establish an efficient and robust network that facilitates gas exchange for photosynthesis, however the mechanism by which this coordinated development occurs remains unclear. Here, we combine microCT and gas exchange analyses with measures of stomatal size and patterning in a range of wild, domesticated and transgenic lines of wheat and Arabidopsis to show that mesophyll airspace formation is linked to stomatal function in both monocots and eudicots. Our results support the hypothesis that gas flux via stomatal pores influences the degree and spatial patterning of mesophyll airspace formation, and indicate that this relationship has been selected for during the evolution of modern wheat. We propose that the coordination of stomata and mesophyll airspace pattern underpins water use efficiency in crops, providing a target for future improvement

Quantifying the impact of microbes on soil structural development and behaviour in wet soils

There is evidence that microbial populations play an important role in altering soil pore geometry, but a full understanding of how this affects subsequent soil behaviour and function is still unclear. In particular the role of microorganisms in soil structural evolution and its consequence for pore morphological development is lacking. Using a combination of bio-chemical measurements and X-ray Computed Tomography (CT) imaging, a temporal comparison of microscale soil structural development in contrasting soil environments was made. The aim was to quantify the effect of microbial activity in the absence of other features likely to cause soil deformation (e.g. earthworms, roots etc.) on soil structural development in wet soils, defined by changes in the soil porous architecture i.e. pore connectivity, pore shape and pore volume during a 24 week period. Three contrasting soil textures were examined and changes compared between field soil, sterilised soil and a glucose enhanced soil treatment. Our results indicate that soil biota can significantly alter their microhabitat by changing soil pore geometry and connectivity, primarily through localised gaseous release. This demonstrates the ability of microorganisms to modify soil structure, and may help reveal the scope by which the microbial-rich rhizosphere can locally influence water and nutrient delivery to plant roots

The free energy of NOAA active region AR 11029

The NOAA active region AR 11029 was a small but highly active sunspot region which produced 73 GOES soft X-ray flares. The flares appear to show a departure from the well known power-law frequency-size distribution. Specifically, too few GOES C-class and no M-class flares were observed by comparison with a power-law distribution (Wheatland in Astrophys. J. 710, 1324, 2010). This was conjectured to be due to the region having insufficient magnetic energy to power large events. We construct nonlinear force-free extrapolations of the coronal magnetic field of active region AR 11029 using data taken on 24 October by the SOLIS Vector-SpectroMagnetograph (SOLIS/VSM), and data taken on 27 October by the Hinode Solar Optical Telescope SpectroPolarimeter (Hinode/SP). Force-free modeling with photospheric magnetogram data encounters problems because the magnetogram data are inconsistent with a force-free model, and we employ a recently developed `self-consistency' procedure which addresses this and accommodates uncertainties in the boundary data (Wheatland and Regnier in Astrophys. J. 700, L88, 2009). We calculate the total energy and free energy of the self-consistent solution and find that the free energy was 4x10^29 erg on 24 October, and 7x10^31 erg on 27 October. An order of magnitude scaling between RHESSI non-thermal energy and GOES peak X-ray flux is established from a sample of flares from the literature and is used to estimate flare energies from observed GOES peak X-ray flux. Based on the scaling, we conclude that the estimated free energy of AR 11029 on 27 October when the flaring rate peaked is sufficient to power M-class or X-class flares, and hence the modeling does not appear to support the hypothesis that the absence of large flares is due to the region having limited energy.Comment: Accepted for publication in Solar Physic

Physics of Solar Prominences: II - Magnetic Structure and Dynamics

Observations and models of solar prominences are reviewed. We focus on non-eruptive prominences, and describe recent progress in four areas of prominence research: (1) magnetic structure deduced from observations and models, (2) the dynamics of prominence plasmas (formation and flows), (3) Magneto-hydrodynamic (MHD) waves in prominences and (4) the formation and large-scale patterns of the filament channels in which prominences are located. Finally, several outstanding issues in prominence research are discussed, along with observations and models required to resolve them.Comment: 75 pages, 31 pictures, review pape