88 research outputs found
The Emergence of the Infrared transient VVV-WIT-06
We report the discovery of an enigmatic large-amplitude (ΔKs> 10.5 mag) transient event in near-IR data obtained by the VISTA Variables in the Via Lactea (VVV) ESO Public Survey. The object (designated VVV-WIT-06) is located at R.A. = 17:07:18.917, decl. = -39:06:26.45 (J2000), corresponding to Galactic coordinates l = 347.14539, b = 0.88522. It exhibits a clear eruption, peaking at Ks = 9 mag during 2013 July and fading to Ks ~ 16.5 in 2017. Our late near-IR spectra show post-outburst emission lines, including some broad emission lines (upward of {FWHM} ~ 3000 k/s). We estimate a total extinction of A_V=10--15 mag in the surrounding field, and no progenitor was observed in ZYJHKs images obtained during 2010-2012 (down to Ks> 18.5 mag). Subsequent deep near-IR imaging and spectroscopy, in concert with the available multiband photometry, indicate that VVV-WIT-06 may be either: (I) the closest Type I SN observed in about 400 years, (II) an exotic high-amplitude nova that would extend the known realm of such objects, or (III) a stellar merger. In all of these cases, VVV-WIT-06 is a fascinating and curious astrophysical target under any of the scenarios considered.Peer reviewe
On the Progenitor System of Nova V2491 Cygni
Nova V2491 Cyg is one of just two detected pre-outburst in X-rays. The light
curve of this nova exhibited a rare "re-brightening" which has been attributed
by some as the system being a polar, whilst others claim that a magnetic WD is
unlikely. By virtue of the nature of X-ray and spectroscopic observations the
system has been proposed as a recurrent nova, however the adoption of a 0.1 day
orbital period is generally seen as incompatible with such a system. In this
research note we address the nature of the progenitor system and the source of
the 0.1 day periodicity. Through the combination of Liverpool Telescope
observations with published data and archival 2MASS data we show that V2491
Cyg, at a distance of 10.5 - 14 kpc, is likely to be a recurrent nova of the U
Sco-class; containing a sub-giant secondary and an accretion disk, rather than
accretion directly onto the poles. We show that there is little evidence, at
quiescence, supporting a ~ 0.1 day periodicity, the variation seen at this
stage is likely caused by flickering of a re-established accretion disk. We
propose that the periodicity seen shortly after outburst is more likely related
to the outburst rather than the - then obscured - binary system. Finally we
address the distance to the system, and show that a significantly lower
distance (~ 2 kpc) would result in a severely under-luminous outburst, and as
such favour the larger distance and the recurrent nova scenario.Comment: 5 pages, 3 images, accepted for publication in A&A as a research not
Supernovae and radio transients in M 82
We present optical and near-infrared (IR) photometry and near-IR spectroscopy
of SN 2004am, the only optically detected supernova (SN) in M 82. These
demonstrate that SN 2004am was a highly reddened type II-P SN similar to the
low luminosity type II-P events such as SNe 1997D and 2005cs. We show that SN
2004am was located coincident with the obscured super star cluster M 82-L, and
from the cluster age infer a progenitor mass of 12 +7/-3 Msun. In addition to
this, we present a high spatial resolution Gemini-N K-band adaptive optics
image of the site of SN 2008iz and a second transient of uncertain nature, both
detected so far only at radio wavelengths. Using image subtraction techniques
together with archival data from the Hubble Space Telescope, we are able to
recover a near-IR transient source co-incident with both objects. We find the
likely extinction towards SN 2008iz to be not more than Av ~ 10. The nature of
the second transient remains elusive and we regard an extremely bright
microquasar in M 82 as the most plausible scenario.Comment: 14 pages, 8 figures, accepted for publication in MNRA
Elemental Abundances in the Ejecta of Old Classical Novae from Late-Epoch Spitzer Spectra
We present Spitzer Space Telescope mid-infrared IRS spectra, supplemented by
ground-based optical observations, of the classical novae V1974 Cyg, V382 Vel,
and V1494 Aql more than 11, 8, and 4 years after outburst respectively. The
spectra are dominated by forbidden emission from neon and oxygen, though in
some cases, there are weak signatures of magnesium, sulfur, and argon. We
investigate the geometry and distribution of the late time ejecta by
examination of the emission line profiles. Using nebular analysis in the low
density regime, we estimate lower limits on the abundances in these novae. In
V1974 Cyg and V382 Vel, our observations confirm the abundance estimates
presented by other authors and support the claims that these eruptions occurred
on ONe white dwarfs. We report the first detection of neon emission in V1494
Aql and show that the system most likely contains a CO white dwarf.Comment: 22 pages, 12 figure
Accurate reconstruction of insertion-deletion histories by statistical phylogenetics
The Multiple Sequence Alignment (MSA) is a computational abstraction that
represents a partial summary either of indel history, or of structural
similarity. Taking the former view (indel history), it is possible to use
formal automata theory to generalize the phylogenetic likelihood framework for
finite substitution models (Dayhoff's probability matrices and Felsenstein's
pruning algorithm) to arbitrary-length sequences. In this paper, we report
results of a simulation-based benchmark of several methods for reconstruction
of indel history. The methods tested include a relatively new algorithm for
statistical marginalization of MSAs that sums over a stochastically-sampled
ensemble of the most probable evolutionary histories. For mammalian
evolutionary parameters on several different trees, the single most likely
history sampled by our algorithm appears less biased than histories
reconstructed by other MSA methods. The algorithm can also be used for
alignment-free inference, where the MSA is explicitly summed out of the
analysis. As an illustration of our method, we discuss reconstruction of the
evolutionary histories of human protein-coding genes.Comment: 28 pages, 15 figures. arXiv admin note: text overlap with
arXiv:1103.434
Evaluation of methods for detecting conversion events in gene clusters
Background: Gene clusters are genetically important, but their analysis poses significant computational challenges. One of the major reasons for these difficulties is gene conversion among the duplicated regions of the cluster, which can obscure their true relationships. Many computational methods for detecting gene conversion events have been released, but their performance has not been assessed for wide deployment in evolutionary history studies due to a lack of accurate evaluation methods. Results: We designed a new method that simulates gene cluster evolution, including large-scale events of duplication, deletion, and conversion as well as small mutations. We used this simulation data to evaluate several different programs for detecting gene conversion events. Conclusions: Our evaluation identifies strengths and weaknesses of several methods for detecting gene conversion, which can contribute to more accurate analysis of gene cluster evolution
Diagnostic, prognostic and predictive value of cell-free miRNAs in prostate cancer : A systematic review
Publisher Copyright: © 2016 Endzeliņš et al.Prostate cancer, the second most frequently diagnosed cancer in males worldwide, is estimated to be diagnosed in 1.1 million men per year. Introduction of PSA testing substantially improved early detection of prostate cancer, however it also led to overdiagnosis and subsequent overtreatment of patients with an indolent disease. Treatment outcome and management of prostate cancer could be improved by the development of non-invasive biomarker assays that aid in increasing the sensitivity and specificity of prostate cancer screening, help to distinguish aggressive from indolent disease and guide therapeutic decisions. Prostate cancer cells release miRNAs into the bloodstream, where they exist incorporated into ribonucleoprotein complexes or extracellular vesicles. Later, cell-free miRNAs have been found in various other biofluids. The initial RNA sequencing studies suggested that most of the circulating cell-free miRNAs in healthy individuals are derived from blood cells, while specific disease-associated miRNA signatures may appear in the circulation of patients affected with various diseases, including cancer. This raised a hope that cell-free miRNAs may serve as non-invasive biomarkers for prostate cancer. Indeed, a number of cell-free miRNAs that potentially may serve as diagnostic, prognostic or predictive biomarkers have been discovered in blood or other biofluids of prostate cancer patients and need to be validated in appropriately designed longitudinal studies and clinical trials. In this review, we systematically summarise studies investigating cell-free miRNAs in biofluids of prostate cancer patients and discuss the utility of the identified biomarkers in various clinical scenarios. Furthermore, we discuss the possible mechanisms of miRNA release into biofluids and outline the biological questions and technical challenges that have arisen from these studies.publishersversionPeer reviewe
Proteomic Analysis of Fusarium solani Isolated from the Asian Longhorned Beetle, Anoplophora glabripennis
Wood is a highly intractable food source, yet many insects successfully colonize and thrive in this challenging niche. Overcoming the lignin barrier of wood is a key challenge in nutrient acquisition, but full depolymerization of intact lignin polymers has only been conclusively demonstrated in fungi and is not known to occur by enzymes produced by insects or bacteria. Previous research validated that lignocellulose and hemicellulose degradation occur within the gut of the wood boring insect, Anoplophora glabripennis (Asian longhorned beetle), and that a fungal species, Fusarium solani (ATCC MYA 4552), is consistently associated with the larval stage. While the nature of this relationship is unresolved, we sought to assess this fungal isolate's ability to degrade lignocellulose and cell wall polysaccharides and to extract nutrients from woody tissue. This gut-derived fungal isolate was inoculated onto a wood-based substrate and shotgun proteomics using Multidimensional Protein Identification Technology (MudPIT) was employed to identify 400 expressed proteins. Through this approach, we detected proteins responsible for plant cell wall polysaccharide degradation, including proteins belonging to 28 glycosyl hydrolase families and several cutinases, esterases, lipases, pectate lyases, and polysaccharide deacetylases. Proteinases with broad substrate specificities and ureases were observed, indicating that this isolate has the capability to digest plant cell wall proteins and recycle nitrogenous waste under periods of nutrient limitation. Additionally, several laccases, peroxidases, and enzymes involved in extracellular hydrogen peroxide production previously implicated in lignin depolymerization were detected. In vitro biochemical assays were conducted to corroborate MudPIT results and confirmed that cellulases, glycosyl hydrolases, xylanases, laccases, and Mn- independent peroxidases were active in culture; however, lignin- and Mn- dependent peroxidase activities were not detected While little is known about the role of filamentous fungi and their associations with insects, these findings suggest that this isolate has the endogenous potential to degrade lignocellulose and extract nutrients from woody tissue
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