Frequency‐Dependent Moment Tensors of Induced Microearthquakes

Analysis of 984 induced microearthquakes from The Geysers geothermal reservoir in California reveals that the retrieved moment tensors depend on the frequency band of the inverted waveforms. The observed dependence is more significant for the percentages of the double‐couple, compensated linear vector dipole, and isotropic (ISO) components than for the focal mechanisms. The average root‐mean‐square of the moment tensors obtained in different frequency bands is correlated with spectra of ambient noise. The percentages of double‐couple and ISO components tend to decrease and increase with the upper cutoff frequency (fu), respectively. This suggests that shear rupture radiates energy preferentially in a lower frequency band and tensile rupture in a higher frequency band. Events displaying a strong increase of the ISO with fu are confined within the same depth interval as the injection points. This might be related to the strong thermoelastic effects in the vicinity of injection points that promote opening of small cracks adjacent to the main fractures

The effect of gender norms on the association between violence and hope among girls in the Democratic Republic of the Congo

Background.Girls at early stages of adolescence are vulnerable to violence victimization in humanitarian contexts, but few studies examine factors that affect girls’ hope in these settings. We assessed attitudes toward traditional gender norms as an effect modifier of the relationship between violence exposure and future orientation in displaced girls.Methods.Secondary analysis, using multivariable regression of cross-sectional data from girls ages 10–14 in South Kivu, Democratic Republic of the Congo. Key variables of interest were attitudes toward intimate partner violence (IPV), Children's Hope Scale (CHS) score, and exposure to physical, emotional, and sexual violence within the last 12 months. Additional covariates included age, educational status, and territory.Results.The interaction of exposure to violence and attitudes toward IPV magnified the association between violence exposure and lower CHS score for physical violence (β = −0.09, p = 0.040) and unwanted sexual touching (β = −0.20, p = 0.003) among girls age 10–14, when adjusting for other covariates. The interaction of exposure to violence and attitudes toward IPV magnified the association between violence exposure and lower CHS score for forced sex (β = −0.22, p = 0.016) among girls age 13–14, when adjusting for covariates. Findings for emotional violence, any form of sexual violence, and coerced sex trended toward lower CHS scores for girls who reported higher acceptance of IPV, but did not reach significance.Conclusions.Findings support the utility of gender norms-transformative programming in increasing resilience of girls who have experienced sexual violence in humanitarian contexts

Guided Neuronal Growth on Arrays of Biofunctionalized GaAs/InGaAs Semiconductor Microtubes

We demonstrate embedded growth of cortical mouse neurons in dense arrays of semiconductor microtubes. The microtubes, fabricated from a strained GaAs/InGaAs heterostructure, guide axon growth through them and enable electrical and optical probing of propagating action potentials. The coaxial nature of the microtubes -- similar to myelin -- is expected to enhance the signal transduction along the axon. We present a technique of suppressing arsenic toxicity and prove the success of this technique by overgrowing neuronal mouse cells.Comment: 3 pages, 4 figure

New criterion for direct black hole formation in rapidly rotating stellar collapse

We study gravitational collapse of rapidly rotating relativistic polytropes of the adiabatic index $\Gamma = 1.5$ and 2, in which the spin parameter $q \equiv J/M^{2} > 1$ where $J$ and $M$ are total angular momentum and gravitational mass, in full general relativity. First, analyzing initial distributions of the mass and the spin parameter inside stars, we predict the final outcome after the collapse. Then, we perform fully general relativistic simulations on assumption of axial and equatorial symmetries and confirm our predictions. As a result of simulations, we find that in contrast with the previous belief, even for stars with $q > 1$, the collapse proceeds to form a seed black hole at central region, and the seed black hole subsequently grows as the ambient fluids accrete onto it. We also find that growth of angular momentum and mass of the seed black hole can be approximately determined from the initial profiles of the density and the specific angular momentum. We define an effective spin parameter at the central region of the stars, $q_{c}$, and propose a new criterion for black hole formation as q_{c} \alt 1. Plausible reasons for the discrepancy between our and previous results are clarified.Comment: submitted to PR

The BioGRID Interaction Database: 2011 update

The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans (http://www.thebiogrid.org). BioGRID currently holds 347 966 interactions (170 162 genetic, 177 804 protein) curated from both high-throughput data sets and individual focused studies, as derived from over 23 000 publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (Saccharomyces cerevisiae), fission yeast (Schizosaccharomyces pombe) and thale cress (Arabidopsis thaliana), and efforts to expand curation across multiple metazoan species are underway. The BioGRID houses 48 831 human protein interactions that have been curated from 10 247 publications. Current curation drives are focused on particular areas of biology to enable insights into conserved networks and pathways that are relevant to human health. The BioGRID 3.0 web interface contains new search and display features that enable rapid queries across multiple data types and sources. An automated Interaction Management System (IMS) is used to prioritize, coordinate and track curation across international sites and projects. BioGRID provides interaction data to several model organism databases, resources such as Entrez-Gene and other interaction meta-databases. The entire BioGRID 3.0 data collection may be downloaded in multiple file formats, including PSI MI XML. Source code for BioGRID 3.0 is freely available without any restrictions

Glimpsing through the high redshift neutral hydrogen fog

We analyze the transmitted flux in a sample of 17 QSOs spectra at 5.74<zem<6.42 to obtain tighter constraints on the volume-averaged neutral hydrogen fraction, xHI, at z~6. We study separately the narrow transmission windows (peaks) and the wide dark portions (gaps) in the observed absorption spectra. By comparing the statistics of these spectral features with Lyalpha forest simulations, we conclude that xHI evolves smoothly from 10^{-4.4} at z=5.3 to 10^{-4.2} at z=5.6, with a robust upper limit xHI<0.36 at z=6.3. The frequency and physical sizes of the peaks imply an origin in cosmic underdense regions and/or in HII regions around faint quasars or galaxies. In one case (the intervening HII region of the faint quasar RD J1148+5253 at z=5.70 along the LOS of SDSS J1148+5251 at z=6.42) the increase of the peak spectral density is explained by the first-ever detected transverse proximity effect in the HI Lyalpha forest; this indicates that at least some peaks result from a locally enhanced radiation field. We then obtain a strong lower limit on the foreground QSO lifetime of tQ>11 Myr. The observed widths of the peaks are found to be systematically larger than the simulated ones. Reasons for such discrepancy might reside either in the photoionization equilibrium assumption or in radiative transfer effects.Comment: 12 pages, 9 figures, revised to match the accepted version including a detailed analysis of the foreground QSO redshift and of the relativistic effects on the HII region shape; MNRAS in pres

Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.

Ubiquitin (Ub)-mediated proteolysis is a fundamental mechanism used by eukaryotic cells to maintain homeostasis and protein quality, and to control timing in biological processes. Two essential aspects of Ub regulation are conjugation through E1-E2-E3 enzymatic cascades and recognition by Ub-binding domains. An emerging theme in the Ub field is that these 2 properties are often amalgamated in conjugation enzymes. In addition to covalent thioester linkage to Ub's C terminus for Ub transfer reactions, conjugation enzymes often bind noncovalently and weakly to Ub at "exosites." However, identification of such sites is typically empirical and particularly challenging in large molecular machines. Here, studying the 1.2-MDa E3 ligase anaphase-promoting complex/cyclosome (APC/C), which controls cell division and many aspects of neurobiology, we discover a method for identifying unexpected Ub-binding sites. Using a panel of Ub variants (UbVs), we identify a protein-based inhibitor that blocks Ub ligation to APC/C substrates in vitro and ex vivo. Biochemistry, NMR, and cryo-electron microscopy (cryo-EM) structurally define the UbV interaction, explain its inhibitory activity through binding the surface on the APC2 subunit that recruits the E2 enzyme UBE2C, and ultimately reveal that this APC2 surface is also a Ub-binding exosite with preference for K48-linked chains. The results provide a tool for probing APC/C activity, have implications for the coordination of K48-linked Ub chain binding by APC/C with the multistep process of substrate polyubiquitylation, and demonstrate the power of UbV technology for identifying cryptic Ub-binding sites within large multiprotein complexes

Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps

A goal of the post-genomics era has been to elucidate a detailed global map of protein-protein interactions (PPIs) within a cell. Here, we show that the presence of co-occurring short polypeptide sequences between interacting protein partners appears to be conserved across different organisms. We present an algorithm to automatically generate PPI prediction method parameters for various organisms and illustrate that global PPIs can be predicted from previously reported PPIs within the same or a different organism using protein primary sequences. The PPI prediction code is further accelerated through the use of parallel multi-core programming, which improves its usability for large scale or proteome-wide PPI prediction. We predict and analyze hundreds of novel human PPIs, experimentally confirm protein functions and importantly predict the first genome-wide PPI maps for S. pombe (∼9,000 PPIs) and C. elegans (∼37,500 PPIs)

Ultrafast Coulomb-induced dynamics of 2D magnetoexcitons

We study theoretically the ultrafast nonlinear optical response of quantum well excitons in a perpendicular magnetic field. We show that for magnetoexcitons confined to the lowest Landau levels, the third-order four-wave-mixing (FWM) polarization is dominated by the exciton-exciton interaction effects. For repulsive interactions, we identify two regimes in the time-evolution of the optical polarization characterized by exponential and {\em power law} decay of the FWM signal. We describe these regimes by deriving an analytical solution for the memory kernel of the two-exciton wave-function in strong magnetic field. For strong exciton-exciton interactions, the decay of the FWM signal is governed by an antibound resonance with an interaction-dependent decay rate. For weak interactions, the continuum of exciton-exciton scattering states leads to a long tail of the time-integrated FWM signal for negative time delays, which is described by the product of a power law and a logarithmic factor. By combining this analytic solution with numerical calculations, we study the crossover between the exponential and non-exponential regimes as a function of magnetic field. For attractive exciton-exciton interaction, we show that the time-evolution of the FWM signal is dominated by the biexcitonic effects.Comment: 41 pages with 11 fig

Identification of aspirin analogues that repress NF-κB signalling and demonstrate anti-proliferative activity towards colorectal cancer in vitro and in vivo

Substantial evidence indicates that aspirin and related non-steroidal anti-inflammatory drugs (NSAIDs) have potential as chemopreventative/therapeutic agents. However, these agents cannot be universally recommended for prevention purposes due to their potential side-effect profiles. Here, we compared the growth inhibitory and mechanistic activity of aspirin to two novel analogues, diaspirin (DiA) and fumaryl diaspirin (F-DiA). We found that the aspirin analogues inhibited cell proliferation and induced apoptosis of colorectal cancer cells at significantly lower doses than aspirin. Similar to aspirin, we found that an early response to the analogues was a reduction in levels of cyclin D1 and stimulation of the NF-κB pathway. This stimulation was associated with a significant reduction in basal levels of NF-κB transcriptional activity, in keeping with previous data for aspirin. However, in contrast to aspirin, DiA and F-DiA activity was not associated with nucleolar accumulation of RelA. For all assays, F-DiA had a more rapid and significant effect than DiA, identifying this agent as particularly active against colorectal cancer. Using a syngeneic colorectal tumour model in mice, we found that, while both agents significantly inhibited tumour growth in vivo, this effect was particularly pronounced for F-DiA. These data identify two compounds that are active against colorectal cancer in vitro and in vivo. They also identify a potential mechanism of action of these agents and shed light on the chemical structures that may be important for the antitumour effects of aspirin