Theory of amplified dispersive Fourier transformation

Amplified dispersive Fourier transformation (ADFT) is a powerful technique that maps the spectrum of an optical pulse into a time-domain waveform using group-velocity dispersion (GVD) and simultaneously amplifies it in the optical domain. It replaces a diffraction grating and detector array with a dispersive fiber and single photodetector, greatly simplifying the system and, more importantly, enabling ultrafast real-time spectroscopic measurements. Here we present a theory of ADFT by deriving the general equation and spectral resolution for ADFT and studying the evolution of the pulse spectrum into time, the effect of GVD coefficients on ADFT, and the requirement for dispersion. This theory is expected to lend valuable insights into the process and implementation of ADFT. © 2009 The American Physical Society.published_or_final_versio

Theory of amplified dispersive Fourier transformation

Amplified dispersive Fourier transformation (ADFT) is a powerful technique that maps the spectrum of an optical pulse into a time-domain waveform using group-velocity dispersion (GVD) and simultaneously amplifies it in the optical domain. It replaces a diffraction grating and detector array with a dispersive fiber and single photodetector, greatly simplifying the system and, more importantly, enabling ultrafast real-time spectroscopic measurements. Here we present a theory of ADFT by deriving the general equation and spectral resolution for ADFT and studying the evolution of the pulse spectrum into time, the effect of GVD coefficients on ADFT, and the requirement for dispersion. This theory is expected to lend valuable insights into the process and implementation of ADFT. © 2009 The American Physical Society.published_or_final_versio

Noise figure and photon probability distribution in Coherent Anti-Stokes Raman Scattering (CARS)

The noise figure and photon probability distribution are calculated for coherent anti-Stokes Raman scattering (CARS) where an anti-Stokes signal is converted to Stokes. We find that the minimum noise figure is ~ 3dB.Comment: 2 page

Rare frustration of optical supercontinuum generation

Extremely large, rare events arise in various systems, often representing a defining character of their behavior. Another class of extreme occurrences, unexpected failures, may appear less important, but in applications demanding stringent reliability, the rare absence of an intended effect can be significant. Here, we report the observation of rare gaps in supercontinuum pulse trains, events we term rogue voids. These pulses of unusually small spectral bandwidth follow a reverse-heavy-tailed statistical form. Previous analysis has shown that rogue waves, the opposite extremes in supercontinuum generation, arise by stochastic enhancement of nonlinearity. In contrast, rogue voids appear when spectral broadening is suppressed by competition between pre-solitonic features within the modulation-instability band. This suppression effect can also be externally induced with a weak control pulse.Comment: 17 pages, 5 figure

Modulation instability, Akhmediev Breathers and continuous wave supercontinuum generation

Numerical simulations of the onset phase of continuous wave supercontinuum generation from modulation instability show that the structure of the field as it develops can be interpreted in terms of the properties of Akhmediev Breathers. Numerical and analytical results are compared with experimental measurements of spectral broadening in photonic crystal fiber using nanosecond pulsesComment: 22 pages, 6 figure

On the modulation instability development in optical fiber systems

Extensive numerical simulations were performed to investigate all stages of modulation instability development from the initial pulse of pico-second duration in photonic crystal fiber: quasi-solitons and dispersive waves formation, their interaction stage and the further propagation. Comparison between 4 different NLS-like systems was made: the classical NLS equation, NLS system plus higher dispersion terms, NLS plus higher dispersion and self-steepening and also fully generalized NLS equation with Raman scattering taken into account. For the latter case a mechanism of energy transfer from smaller quasi-solitons to the bigger ones is proposed to explain the dramatical increase of rogue waves appearance frequency in comparison to the systems when the Raman scattering is not taken into account.Comment: 9 pages, 54 figure

A Systematic Review of Music Therapy Practice and Outcomes with Acute Adult Psychiatric In-Patients

PMCID: PMC3732280This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

BoBafit: A copy number clustering tool designed to refit and recalibrate the baseline region of tumors’ profiles

Human cancer arises from a population of cells that have acquired a wide range of genetic alterations, most of which are targets of therapeutic treatments or are used as prognostic factors for patient's risk stratification. Among these, copy number alterations (CNAs) are quite frequent. Currently, several molecular biology technologies, such as microarrays, NGS and single-cell approaches are used to define the genomic profile of tumor samples. Output data need to be analyzed with bioinformatic approaches and particularly by employing computational algorithms. Molecular biology tools estimate the baseline region by comparing either the mean probe signals, or the number of reads to the reference genome. However, when tumors display complex karyotypes, this type of approach could fail the baseline region estimation and consequently cause errors in the CNAs call. To overcome this issue, we designed an R-package, BoBafit, able to check and, eventually, to adjust the baseline region, according to both the tumor-specific alterations’ context and the sample-specific clustered genomic lesions. Several databases have been chosen to set up and validate the designed package, thus demonstrating the potential of BoBafit to adjust copy number (CN) data from different tumors and analysis techniques. Relevantly, the analysis highlighted that up to 25% of samples need a baseline region adjustment and a redefinition of CNAs calls, thus causing a change in the prognostic risk classification of the patients. We support the implementation of BoBafit within CN analysis bioinformatics pipelines to ensure a correct patient's stratification in risk categories, regardless of the tumor type

SPRWeb: preserving subjective responses to website colour schemes through automatic recolouring

Colours are an important part of user experiences on the Web. Colour schemes influence the aesthetics, first impressions and long-term engagement with websites. However, five percent of people perceive a subset of all colours because they have colour vision deficiency (CVD), resulting in an unequal and less-rich user experience on the Web. Traditionally, people with CVD have been supported by recolouring tools that improve colour differentiability, but do not consider the subjective properties of colour schemes while recolouring. To address this, we developed SPRWeb, a tool that recolours websites to preserve subjective responses and improve colour differentiability - thus enabling users with CVD to have similar online experiences. To develop SPRWeb, we extended existing models of non-CVD subjective responses to CVD, then used this extended model to steer the recolouring process. In a lab study, we found that SPRWeb did significantly better than a standard recolouring tool at preserving the temperature and naturalness of websites, while achieving similar weight and differentiability preservation. We also found that recolouring did not preserve activity, and hypothesize that visual complexity influences activity more than colour. SPRWeb is the first tool to automatically preserve the subjective and perceptual properties of website colour schemes thereby equalizing the colour-based web experience for people with CVD.Engineering and Applied Science