Distribution and Efficiency of Hydrocarbon-Oxidizing Bacteria in a Freshwater Reservoir

Hydrocarbon-oxidizing bacteria were identified from three stations on DeGray Reservoir, Arkansas. The organisms were primarily gram-negative rods representing 9 taxa and 37 biotypes Pseudomonas spp. were the most common isolates. The largest populations were found in areas most frequently used by boaters, although seasonal fluctuations were apparent during the spring and fall. The degradation of outboard motor oil by the five most rapidly growing isolates was studied. Each species had a different decomposition profile, and substrate oxidation rates were variable Acinetobacter calcoaceticus var. anitratus was the most efficient decomposer

P-Multigrid expansion of hybrid multilevel solvers for discontinuous Galerkin finite element discrete ordinate (DG-FEM-SN) diffusion synthetic acceleration (DSA) of radiation transport algorithms

Effective preconditioning of neutron diffusion problems is necessary for the development of efficient DSA schemes for neutron transport problems. This paper uses P-multigrid techniques to expand two preconditioners designed to solve the MIP diffusion neutron diffusion equation with a discontinuous Galerkin (DG-FEM) framework using first-order elements. These preconditioners are based on projecting the first-order DG-FEM formulation to either a linear continuous or a constant discontinuous FEM system. The P-multigrid expansion allows the preconditioners to be applied to problems discretised with second and higher-order elements. The preconditioning algorithms are defined in the form of both a V-cycle and W-cycle and applied to solve challenging neutron diffusion problems. In addition a hybrid preconditioner using P-multigrid and AMG without a constant or continuous coarsening is used. Their performance is measured against a computationally efficient standard algebraic multigrid preconditioner. The results obtained demonstrate that all preconditioners studied in this paper provide good convergence with the continuous method generally being the most computationally efficient. In terms of memory requirements the preconditioners studied significantly outperform the AMG

Current research priorities for UK occupational physicians and occupational health researchers: a modified Delphi study

Objectives: Studies identifying national occupational health (OH) research priorities have been conducted in several countries to establish where OH research should be focused and where funding should be targeted. However, the UK findings are now over 20 years old, and OH practice is continuously evolving. The aim of this study was to identify current research priorities for UK occupational physicians (OPs) and occupational health researchers (OHRs). Methods: Current research priorities in OH were identified using a modified Delphi technique. This was conducted in two rounds to achieve consensus. Research priorities were rated, and then ranked using questionnaires developed from expert panel discussions, key research topics identified from the medical literature and participant feedback. Overall and intergroup comparisons were completed for the ranking scores. Results Consensus among OPs and OHRs was high with almost all (9/10) primary domains rated as ‘very important’ or ‘absolutely necessary’ by more than 54% of respondents. The research priority areas ranked highest were jointly economic evaluation/cost effectiveness studies and disability management followed by occupational disease/injury/illness. Occupational health policy was ranked lowest after sickness absence management and health promotion. The secondary domain analysis identified priority emphasis on mental health and psychosocial hazards within the workplace and the need to further develop evidence-based guidance for clinical OH practice. Conclusions: We identified the current research priorities for UK OPs and OHRs. The findings will inform future national OH research strategy and support research that addresses important knowledge gaps within OH and other interdisciplinary specialties

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases.

Yuan et al. recently described an independent evaluation of several phenotype-driven gene prioritization methods for Mendelian disease on two separate, clinical datasets. Although they attempted to use default settings for each tool, we describe three key differences from those we currently recommend for our Exomiser and PhenIX tools. These influence how variant frequency, quality and predicted pathogenicity are used for filtering and prioritization. We propose that these differences account for much of the discrepancy in performance between that reported by them (15-26% diagnoses ranked top by Exomiser) and previously published reports by us and others (72-77%). On a set of 161 singleton samples, we show using these settings increases performance from 34% to 72% and suggest a reassessment of Exomiser and PhenIX on their datasets using these would show a similar uplift

Arsenic and selenium

Arsenic (As) and selenium (Se) have become increasingly important in environmental geochemistry because of their significance to human health. Their concentrations vary markedly in the environment, partly in relation to geology and partly as a result of human activity. Some of the contamination evident today probably dates back to the first settled civilizations that used metals. This chapter outlines the main effects of arsenic and selenium on human and animal health, their abundance and distribution in the environment, sampling and analysis, and the main factors controlling their speciation and cycling. Such information should help to identify aquifers, water resources, and soils at risk from high concentrations of arsenic and selenium, and areas of selenium deficiency. Human activity has had, and is likely to continue to have, a major role in releasing arsenic and selenium from the geosphere and in perturbing the natural distribution of these and other elements over the Earth’s surface

Sustainable farming with native rocks: the transition without revolution.

The development process which humanity passed through favored a series of conquests, reflected in the better quality of life and longevity, however, it also provoked upsets and severe transformation in the environment and in the human food security. Such process is driving the ecosystems to be homogeneous, and, therefore,the nutrients� supply, via nourishment. To change this panorama, the present work discusses the gains of incorporating the stonemeal technique as a strategic alternative to give back the essential fertile characteristics to the soils. This technology has the function of facilitating the rejuvenation of the soils and increasing the availability of the necessary nutrients to the full development of the plants which is a basic input for the proliferation of life in all its dimensions

CYP2C19 Genotype Prevalence and Association With Recurrent Myocardial Infarction in British–South Asians Treated With Clopidogrel

BACKGROUND: Cytochrome P450 family 2 subfamily C member 19 (CYP2C19) is a hepatic enzyme involved in the metabolism of clopidogrel from a prodrug to its active metabolite. Prior studies of genetic polymorphisms in CYP2C19 and their relationship with clinical efficacy have not included South Asian populations. OBJECTIVES: The objective of this study was to assess prevalence of common CYP2C19 genotype polymorphisms in a British-South Asian population and correlate these with recurrent myocardial infarction risk in participants prescribed clopidogrel. METHODS: The Genes & Health cohort of British Bangladeshi and Pakistani ancestry participants were studied. CYP2C19 diplotypes were assessed using array data. Multivariable logistic regression was used to test for association between genetically inferred CYP2C19 metabolizer status and recurrent myocardial infarction, controlling for known cardiovascular disease risk factors, percutaneous coronary intervention, age, sex, and population stratification. RESULTS: Genes & Health cohort participants (N = 44,396) have a high prevalence (57%) of intermediate or poor CYP2C19 metabolizers, with at least 1 loss-of-function CYP2C19 allele. The prevalence of poor metabolizers carrying 2 CYP2C19 loss-of-function alleles is 13%, which is higher than that in previously studied European (2.4%) and Central/South Asian populations (8.2%). Sixty-nine percent of the cohort who were diagnosed with an acute myocardial infarction were prescribed clopidogrel. Poor metabolizers were significantly more likely to have a recurrent myocardial infarction (OR: 3.1; P = 0.019). CONCLUSIONS: A pharmacogenomic-driven approach to clopidogrel prescribing has the potential to impact significantly on clinical management and outcomes in individuals of Bangladeshi and Pakistani ancestry

Ethnic Minorities and their Health Needs: Crisis of Perception and Behaviours

There is considerable evidence to suggest that racial and ethnic disparities exist in the provision of emergency and wider healthcare. The importance of collecting patient ethnic data has received attention in literature across the world and eliminating ethnic and racial health equalities is one of the primary aims of healthcare providers internationally. The poor health status of certain racial and ethnic groups has been well documented. The improvement of racial and ethnic disparities in healthcare is at the forefront of many public health agendas. This article addresses important policy, practice, and cultural issues confronted by the pre-hospital emergency care setup. This aspect of care plays a unique role in the healthcare safety net in providing a service to a very diverse population, including members of ethnic and racial minorities. Competent decision making by the emergency care practitioners requires patient-specific information and the health provider's prior medical knowledge and clinical training. The article reviews the current ethnicity trends in the UK along with international evidence linking ethnicity and health inequalities. The study argues that serious difficulties will arise between the health provider and the patient if they come from different backgrounds and therefore experience difficulties in cross-cultural communication. This adversely impacts on the quality of diagnostic and clinical decision making for minority patients. The article offers few strategies to address health inequalities in emergency care and concludes by arguing that much more needs to be done to ensure that we are hearing the voices of more diverse groups, groups who are often excluded from engagement through barriers such as language or mobility difficulties

Phenotype-driven approaches to enhance variant prioritization and diagnosis of rare disease.

Rare disease diagnostics and disease gene discovery have been revolutionized by whole-exome and genome sequencing but identifying the causative variant(s) from the millions in each individual remains challenging. The use of deep phenotyping of patients and reference genotype-phenotype knowledge, alongside variant data such as allele frequency, segregation, and predicted pathogenicity, has proved an effective strategy to tackle this issue. Here we review the numerous tools that have been developed to automate this approach and demonstrate the power of such an approach on several thousand diagnosed cases from the 100,000 Genomes Project. Finally, we discuss the challenges that need to be overcome if we are going to improve detection rates and help the majority of patients that still remain without a molecular diagnosis after state-of-the-art genomic interpretation