Downscaling stream flow time series from monthly to daily scales using an auto-regressive stochastic algorithm: StreamFARM

Downscaling methods are used to derive stream flow at a high temporal resolution from a data series that has a coarser time resolution. These algorithms are useful for many applications, such as water management and statistical analysis, because in many cases stream flow time series are available with coarse temporal steps (monthly), especially when considering historical data; however, in many cases, data that have a finer temporal resolution are needed (daily). In this study, we considered a simple but efficient stochastic auto-regressive model that is able to downscale the available stream flow data from monthly to daily time resolution and applied it to a large dataset that covered the entire North and Central American continent. Basins with different drainage areas and different hydro-climatic characteristics were considered, and the results show the general good ability of the analysed model to downscale monthly stream flows to daily stream flows, especially regarding the reproduction of the annual maxima. If the performance in terms of the reproduction of hydrographs and duration curves is considered, better results are obtained for those cases in which the hydrologic regime is such that the annual maxima stream flow show low or medium variability, which means that they have a low or medium coefficient of variation; however, when the variability increases, the performance of the model decreases

Biological evidence supports an early and complex emergence of the Isthmus of Panama.

The linking of North and South America by the Isthmus of Panama had major impacts on global climate, oceanic and atmospheric currents, and biodiversity, yet the timing of this critical event remains contentious. The Isthmus is traditionally understood to have fully closed by ca. 3.5 million years ago (Ma), and this date has been used as a benchmark for oceanographic, climatic, and evolutionary research, but recent evidence suggests a more complex geological formation. Here, we analyze both molecular and fossil data to evaluate the tempo of biotic exchange across the Americas in light of geological evidence. We demonstrate significant waves of dispersal of terrestrial organisms at approximately ca. 20 and 6 Ma and corresponding events separating marine organisms in the Atlantic and Pacific oceans at ca. 23 and 7 Ma. The direction of dispersal and their rates were symmetrical until the last ca. 6 Ma, when northern migration of South American lineages increased significantly. Variability among taxa in their timing of dispersal or vicariance across the Isthmus is not explained by the ecological factors tested in these analyses, including biome type, dispersal ability, and elevation preference. Migration was therefore not generally regulated by intrinsic traits but more likely reflects the presence of emergent terrain several millions of years earlier than commonly assumed. These results indicate that the dramatic biotic turnover associated with the Great American Biotic Interchange was a long and complex process that began as early as the Oligocene-Miocene transition

Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities

Human APOBEC3F and APOBEC3G are double-domained deaminases that can catalyze dC→dU deamination in HIV-1 and MLV retroviral DNA replication intermediates, targeting T–C or C–C dinucleotides, respectively. HIV-1 antagonizes their action through its vif gene product, which has been shown (at least in the case of APOBEC3G) to interact with the N-terminal domain of the deaminase, triggering its degradation. Here, we compare APOBEC3F and APOBEC3G to APOBEC3C, a single-domained deaminase that can also act on both HIV-1 and MLV. We find that whereas APOBEC3C contains all the information necessary for both Vif-binding and cytidine deaminase activity in a single domain, it is the C-terminal domain of APOBEC3F and APOBEC3G that confer their target site specificity for cytidine deamination. We have exploited the fact that APOBEC3C, whilst highly homologous to the C-terminal domain of APOBEC3F, exhibits a distinct target site specificity (preferring Y–C dinucleotides) in order to identify residues in APOBEC3F that might affect its target site specificity. We find that this specificity can be altered by single amino acid substitutions at several distinct positions, suggesting that the strong dependence of APOBEC3-mediated deoxycytidine deamination on the 5′-flanking nucleotide is sensitive to relatively subtle changes in the APOBEC3 structure. The approach has allowed the isolation of APOBEC3 DNA mutators that exhibit novel target site preferences

Environmentally driven extinction and opportunistic origination explain fern diversification patterns.

Combining palaeontological and neontological data offers a unique opportunity to investigate the relative roles of biotic and abiotic controls of species diversification, and the importance of origination versus extinction in driving evolutionary dynamics. Ferns comprise a major terrestrial plant radiation with an extensive evolutionary history providing a wealth of modern and fossil data for modelling environmental drivers of diversification. Here we develop a novel Bayesian model to simultaneously estimate correlations between diversification dynamics and multiple environmental trajectories. We estimate the impact of different factors on fern diversification over the past 400 million years by analysing a comprehensive dataset of fossil occurrences and complement these findings by analysing a large molecular phylogeny. We show that origination and extinction rates are governed by fundamentally different processes: originations depend on within-group diversity but are largely unaffected by environmental changes, whereas extinctions are strongly affected by external factors such as climate and geology. Our results indicate that the prime driver of fern diversity dynamics is environmentally driven extinction, with origination being an opportunistic response to diminishing ecospace occupancy

Changes in soil biological properties in different management and tyllage systems in petrocalcic argiudoll

We analyzed the effect of different tillage systems on soils under different land-use histories, on biological properties of soil during one year. The experiment was carried out at a Petrocalcic Argiudoll of Tres Arroyos (Buenos Aires, Argentina). The specific aim was to describe and compare the soil organic carbon (SOC), the soil basal respiration (BR) and the activities of the enzyme dehydrogenase, urease and acid-phosphomonoesterase under zero and conventional tillage on soils under pasture and intensive agriculture. The SOC concentration was highest in summer (postharvest) independently of tillage system or land-use history. However, in autumn the plots under conventional tillage showed higher values of SOC than those with zero tillage, independently of land-use history. The BR had a significant benefit in favour of summer pasture soils. The effect of land-use history or the tillage system on the enzymes activity was dependent of sampling season. Therefore, the soil enzymes were more sensible than SOC and BR. In temporal studies the effect of sampling season is strongest that others factors as tillage systems or land-use history.EEA BarrowFil: Moreno, María Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biología Funcional y Biotecnología; Argentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Agronomía. Area Microbiología; ArgentinaFil: Biganzoli, Fernando. Universidad de Buenos Aires. Facultad de Agronomía. Departmento de Métodos Cuantitativos y Sistemas de Información; ArgentinaFil: Casas, C. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Recursos Naturales. Cátedra de Edafología; ArgentinaFil: Manso, Marina Lucrecia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Barrow; ArgentinaFil: Moreira, E. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biología Funcional y Biotecnología; Argentina. Instituto Antártico Argentino; ArgentinaFil: Silvestro, Luciana Belén. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biologia Funcional y Biotecnología; Argentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Agronomía. Area Química; Argentin

Fossil data support a pre-Cretaceous origin of flowering plants

Data and scripts associated with the paper. Updated version of the code will be available here: https://github.com/dsilvestro/rootBB

Cultivable soil fungi community response to agricultural management and tillage system on temperate soil

In agricultural soils, fungi constitute most of the total microbial biomass in the environment contributing with more than 50% of the soil biomass. The fungi should be considered as a link in the production not only by their attributes but also for their potential pathogenicity on crops chains. We aim to determine in what extent the combination of management styles and tillage systems control specific cultivable soil fungal community structure in temperate fertile Petrocalcic Argiudoll soil in a field experiment. We measured soil fungal richness, abundance and diversity along a one-year experiment (2009–2010). The plots were subjected to different tillage systems (conventional vs. zero) combined with different agricultural management histories (pasture/agriculture rotation vs. intensive agriculture). The measures were performed every three months along a year in three replicated plots. Rotation with pastures and zero tillage stimulated the saprophytic soil fungi community in detriment of pathogens. The clearest dissimilarity was given by the seasons. The results obtained from assay suggested that the seasons effect was strongest that the management or tillage on the soil fungal community.EEA BarrowFil: Moreno, María Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biología Funcional y Biotecnología; Argentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Agronomía. Area Microbiología; ArgentinaFil: Casas, C. Universidad de Buenos Aires. Facultad de Agronomía. Departamento de Recursos Naturales. Cátedra de Edafología; Argentina. Universidad de Buenos Aires. Facultad de Agronomía. IFEVA. Consejo Nacional de Investigaciones Científicas y Técnicas. IFEVA; ArgentinaFil: Biganzoli, Fernando. Universidad de Buenos Aires. Facultad de Agronomía. Departmento de Métodos Cuantitativos y Sistemas de Información; ArgentinaFil: Manso, Marina Lucrecia. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Barrow; ArgentinaFil: Silvestro, Luciana Belén. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biologia Funcional y Biotecnología; Argentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Agronomía. Area Química; ArgentinaFil: Moreira, E. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biología Funcional y Biotecnología; Argentina. Instituto Antártico Argentino; ArgentinaFil: Stenglein, Sebastian Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Cientifico Tecnolológico Mar del Plata. Instituto de Investigaciones en Biodiversidad y Biotecnología. Laboratorio de Biologia Funcional y Biotecnología; Argentina. Universidad Nacional del Centro de la Provincia de Buenos Aires. Facultad de Agronomía; Argentin

Vitamin D5 in Arabidopsis thaliana

Abstract Vitamin D3 is a secosterol hormone critical for bone growth and calcium homeostasis, produced in vertebrate skin by photolytic conversion of the cholesterol biosynthetic intermediate provitamin D3. Insufficient levels of vitamin D3 especially in the case of low solar UV-B irradiation is often compensated by an intake of a dietary source of vitamin D3 of animal origin. Small amounts of vitamin D3 were described in a few plant species and considered as a peculiar feature of their phytochemical diversity. In this report we show the presence of vitamin D5 in the model plant Arabidopsis thaliana. This plant secosterol is a UV-B mediated derivative of provitamin D5, the precursor of sitosterol. The present work will allow a further survey of vitamin D distribution in plant species