Apollo 14: Some geochemical aspects

Chemical analyses were obtained for five samples of Apollo 14 regolith fines, three 14230 core samples, soil clod 14049, breccias 14305 and 14319, 14310 basalt, and some separated phases. The chemical uniformity of these Apollo 14 samples indicates thorough mixing and/or uniform source rocks. Basalt 14310 can be matched well in composition by a four to one mixture of soil and plagioclase. The Eu(2+)/Eu(3+) ratios calculated for 14310 pigeonite and plagioclase are similar to those for Apollo 12 and 15 mare-type basalt phases; this indicates similar redox conditions. Apollo 14 samples are chemically similar to Apollo 12 and 15 KREEP as distinct from Apollo 11, 12, and 15 and Luna 16 mare-type basalts

Great Sumatra Earthquake Registers on Electrostatic Sensor

Strong electrical signals that correspond to the Mw = 9.3 earthquake of 26 December 2004, which occurred at 0058:50.7 UTC off the west coast of northern Sumatra, Indonesia, were recorded by an electrostatic sensor (a device that detects short-term variations in Earth’s electrostatic fi eld) at a seismic station in Italy, which had been installed to study the infl uence of local earthquakes on a new landslide monitoring system. Electrical signals arrived at the station practically instantaneously and were detected up to several hours before the onset of the Sumatra earthquake (Figure 1) as well as before local quakes. The corresponding seismic signals (p-waves) arrived 740 seconds after the start of the earthquake. Because the electrical signals travel at the speed of light, electrical monitoring for the global detection of very strong earthquakes could be an important tool in signifi cantly increasing the hazard alert window

Coupled Hydromechanical Modelling of a Vertical Hydraulic Sealing System Based on the Sandwich Principle

For the shaft sealing of a repository for radioactive waste, a Sandwich sealing system was developed by KIT-CMM consisting of bentonite-based sealing segments (DS) and sand mixture-based equipotential segments (ES). To demonstrate the functionality of the Sandwich sealing system, various laboratory tests (MiniSandwich tests and semi-technical scale experiments) have been carried out before a large-scale experiment has been implemented in situ at the Mont Terri Rock Laboratory (CH). An important coupled process in the Sandwich system is the swelling deformation of the DS while aqueous fluid penetrates into the system. Consequently, the interparticle porosity (effective porosity) of the DS decreases by swelling strain, resulting in a reduction in the permeability of the DS. Pore space of the ES also decreases slightly due to swelling stress in the adjacent DS, which also leads to a reduction in the permeability of the ES. To understand the coupled hydromechanical processes of the Sandwich sealing system, a numerical model was developed to interpret the experimental observations from the MiniSandwich tests and to parameterize different components. A linear swelling model for DS and empirical functions for the swelling deformation-induced permeability change for both DS and ES segments were introduced into the coupled model with Richards’ flow and elastic model. Sensitivity analysis with parameter variations of the most important parameters reduces the uncertainty in the system behavior

Integrating protein-protein interactions and text mining for protein function prediction

<p>Abstract</p> <p>Background</p> <p>Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, but curation work is slow and expensive. Automatic techniques that support this work are still lacking reliability. We developed a method to identify conserved protein interaction graphs and to predict missing protein functions from orthologs in these graphs. To enhance the precision of the results, we furthermore implemented a procedure that validates all predictions based on findings reported in the literature.</p> <p>Results</p> <p>Using this procedure, more than 80% of the GO annotations for proteins with highly conserved orthologs that are available in UniProtKb/Swiss-Prot could be verified automatically. For a subset of proteins we predicted new GO annotations that were not available in UniProtKb/Swiss-Prot. All predictions were correct (100% precision) according to the verifications from a trained curator.</p> <p>Conclusion</p> <p>Our method of integrating CCSs and literature mining is thus a highly reliable approach to predict GO annotations for weakly characterized proteins with orthologs.</p

Computational reconstruction and analysis of structural models of avian cryptochrome 4

A recent study by Xu et al. (Nature,2021, 594, 535−540) provided strongevidence that cryptochrome 4 (Cry4) is a key protein to endow migratory birds with the magneticcompass sense. The investigation compared the magneticfield response of Cry4 from migratoryand nonmigratory bird species and suggested that a difference in magnetic sensitivity could exist.Thisfinding prompted an in-depth investigation into Cry4 protein differences on the structuraland dynamic levels. In the present study, the pigeon Cry4 (ClCry4) crystal structure was used toreconstruct the missing avian Cry4 protein structures via homology modeling for carefullyselected bird species. The reconstructed Cry4 structure from European robin, Eurasian blackcap,zebrafinch, chicken, and pigeon were subsequently simulated dynamically and analyzed. Thestudied avian Cry4 structures showflexibility in analogous regions pointing to similar activationmechanisms and/or signaling interaction partners. It can be concluded that the experimentallyrecorded difference in the magneticfield sensitivity of Cry4 from different birds is unlikely to bedue to solely intrinsic dynamics of the proteins but requires additional factors that have not yet been identified

Organics in comet 67P – a first comparative analysis of mass spectra from ROSINA–DFMS, COSAC and Ptolemy

The ESA Rosetta spacecraft followed comet 67P at a close distance for more than 2 yr. In addition, it deployed the lander Philae on to the surface of the comet. The (surface) composition of the comet is of great interest to understand the origin and evolution of comets. By combining measurements made on the comet itself and in the coma, we probe the nature of this surface material and compare it to remote sensing observations. We compare data from the double focusing mass spectrometer (DFMS) of the ROSINA experiment on ESA's Rosetta mission and previously published data from the two mass spectrometers COSAC (COmetary Sampling And Composition) and Ptolemy on the lander. The mass spectra of all three instruments show very similar patterns of mainly CHO-bearing molecules that sublimate at temperatures of 275 K. The DFMS data also show a great variety of CH-, CHN-, CHS-, CHO2- and CHNO-bearing saturated and unsaturated species. Methyl isocyanate, propanal and glycol aldehyde suggested by the earlier analysis of the measured COSAC spectrum could not be confirmed. The presence of polyoxymethylene in the Ptolemy spectrum was found to be unlikely. However, the signature of the aromatic compound toluene was identified in DFMS and Ptolemy data. Comparison with remote sensing instruments confirms the complex nature of the organics on the surface of 67P, which is much more diverse than anticipated

A realistic assessment of methods for extracting gene/protein interactions from free text

Background: The automated extraction of gene and/or protein interactions from the literature is one of the most important targets of biomedical text mining research. In this paper we present a realistic evaluation of gene/protein interaction mining relevant to potential non-specialist users. Hence we have specifically avoided methods that are complex to install or require reimplementation, and we coupled our chosen extraction methods with a state-of-the-art biomedical named entity tagger. Results: Our results show: that performance across different evaluation corpora is extremely variable; that the use of tagged (as opposed to gold standard) gene and protein names has a significant impact on performance, with a drop in F-score of over 20 percentage points being commonplace; and that a simple keyword-based benchmark algorithm when coupled with a named entity tagger outperforms two of the tools most widely used to extract gene/protein interactions. Conclusion: In terms of availability, ease of use and performance, the potential non-specialist user community interested in automatically extracting gene and/or protein interactions from free text is poorly served by current tools and systems. The public release of extraction tools that are easy to install and use, and that achieve state-of-art levels of performance should be treated as a high priority by the biomedical text mining community

Electrostatic field variations related to the big Sumatra earthquake

Electrical effects in correlation with earthquakes have been reported by many authors and different theories are discussed about the origin of these seismo-electrical effects. The actually most popular models consider piezoelectric effects, electro-kinetic effects, surface charge on crack wall, and rock/magma fragmentation as probable mechanism for the generation of electromagnetic emissions. Recently also laboratory experiments have been performed to study the mechanisms of rock fracturing, frictional sliding, and stick-slip phenomena. In this context our group has developed a method for monitoring of instable mountain flanks, which is presently tested at several sites. Here we report on extraordinary electrical signals, recorded by a station in Italy, that clearly corresponds to the Mw=9.3 earthquake of December 26, 2004, which occurred at 00:58:50.7 (UTC) “off the west coast of northern Sumatra, Indonesia” at 3.50 N, 95.72 E. Electrical monitoring with this method can be an additional tool for the global detection of very strong earthquakes. As this signals travel at the speed of light, the alert window will be significantly increased