Recent Contributions of Theory to Our Understanding of the Atlantic Meridional Overturning Circulation

Revolutionary observational arrays, together with a new generation of ocean and climate models, have provided new and intriguing insights into the Atlantic Meridional Overturning Circulation (AMOC) over the last two decades. Theoretical models have also changed our view of the AMOC, providing a dynamical framework for understanding the new observations and the results of complex models. In this paper we review recent advances in conceptual understanding of the processes maintaining the AMOC. We discuss recent theoretical models that address issues such as the interplay between surface buoyancy and wind forcing, the extent to which the AMOC is adiabatic, the importance of mesoscale eddies, the interaction between the middepth North Atlantic Deep Water cell and the abyssal Antarctic Bottom Water cell, the role of basin geometry and bathymetry, and the importance of a three‐dimensional multiple‐basin perspective. We review new paradigms for deep water formation in the high‐latitude North Atlantic and the impact of diapycnal mixing on vertical motion in the ocean interior. And we discuss advances in our understanding of the AMOC's stability and its scaling with large‐scale meridional density gradients. Along with reviewing theories for the mean AMOC, we consider models of AMOC variability and discuss what we have learned from theory about the detection and meridional propagation of AMOC anomalies. Simple theoretical models remain a vital and powerful tool for articulating our understanding of the AMOC and identifying the processes that are most critical to represent accurately in the next generation of numerical ocean and climate models

Zebra Mussel Infestation of Unionid Bivalves (Unionidae) in North America

In 1989, zebra mussels received national attention in North America when they reached densities exceeding 750,000/m2 in a water withdrawal facility along the shore of western Lake Erie of the Laurentian Great Lakes. Although water withdrawal problems caused by zebra mussels have been of immediate concern, ecological impacts attributed to mussels are likely to be the more important long-term issue for surface waters in North America. To date, the epizoic colonization (i.e., infestation) of unionid bivalve mollusks by zebra mussels has caused the most direct and severe ecological impact. Infestation of and resulting impacts caused by zebra mussels on unionids in the Great Lakes began in 1988. By 1990, mortality of unionids was occurring at some locations; by 1991, extant populations of unionids in western Lake Erie were nearly extirpated; by 1992, unionid populations in the southern half of Lake St. Clair were extirpated; by 1993, unionids in widely separated geographic areas of the Great Lakes and the Mississippi River showed high mortality due to mussel infestation. All infested unionid species in the Great Lakes (23) have become infested and exhibited mortality within two to four years after heavy infestation began. Data indicate that mean zebra mussel densities \u3e5,000-6,000/m2 and infestation intensities \u3e100-200/unionid in the presence of heavy zebra mussel recruitment results in near total mortality of unionids. At present, all unionid species in rivers, streams, and lakes that sympatrically occur with zebra mussels have been infested and, in many locations, negatively impacted by zebra mussels. We do not know the potential consequences of infestation on the 297 unionid species found in North America, but believe zebra mussels pose an immediate threat to the abundance and diversity of unionids

Recent contributions of theory to our understanding of the Atlantic Meridional Overturning Circulation

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, H. L., Cessi, P., Marshall, D. P., Schloesser, F., & Spall, M. A. Recent contributions of theory to our understanding of the Atlantic Meridional Overturning Circulation. Journal of Geophysical Research-Oceans, 124(8), (2019): 5376-5399, doi: 10.1029/2019JC015330.Revolutionary observational arrays, together with a new generation of ocean and climate models, have provided new and intriguing insights into the Atlantic Meridional Overturning Circulation (AMOC) over the last two decades. Theoretical models have also changed our view of the AMOC, providing a dynamical framework for understanding the new observations and the results of complex models. In this paper we review recent advances in conceptual understanding of the processes maintaining the AMOC. We discuss recent theoretical models that address issues such as the interplay between surface buoyancy and wind forcing, the extent to which the AMOC is adiabatic, the importance of mesoscale eddies, the interaction between the middepth North Atlantic Deep Water cell and the abyssal Antarctic Bottom Water cell, the role of basin geometry and bathymetry, and the importance of a three‐dimensional multiple‐basin perspective. We review new paradigms for deep water formation in the high‐latitude North Atlantic and the impact of diapycnal mixing on vertical motion in the ocean interior. And we discuss advances in our understanding of the AMOC's stability and its scaling with large‐scale meridional density gradients. Along with reviewing theories for the mean AMOC, we consider models of AMOC variability and discuss what we have learned from theory about the detection and meridional propagation of AMOC anomalies. Simple theoretical models remain a vital and powerful tool for articulating our understanding of the AMOC and identifying the processes that are most critical to represent accurately in the next generation of numerical ocean and climate models.H. L. J. and D. P. M. are grateful for funding from the U.K. Natural Environment Research Council under the UK‐OSNAP project (NE/K010948/1). P. C. gratefully acknowledges support by the National Science Foundation through OCE‐1634128. M. A. S. was supported by the National Science Foundation Grants OCE‐1558742 and OCE‐1634468. We are also grateful to Eli Tziperman and an anonymous reviewer whose comments helped us to improve the manuscript. The Estimating the Circulation and Climate of the Ocean state estimate (ECCO version 4 release 3) used to produce Figure 2 is available online (https://ecco.jpl.nasa.gov). Please refer to the original papers reviewed here for access to any other data discussed

Dispersed Crude Oil Induces Dysbiosis In the Red Snapper \u3ci\u3eLutjanus campechanus\u3c/i\u3e External Microbiota

The fish external microbiota competitively excludes primary pathogens and prevents the proliferation of opportunists. A shift from healthy microbiota composition, known as dysbiosis, may be triggered by environmental stressors and increases host susceptibility to disease. The Deepwater Horizon (DWH) oil spill was a significant stressor event in the Gulf of Mexico. Despite anecdotal reports of skin lesions on fishes following the oil spill, little information is available on the impact of dispersed oil on the fish external microbiota. In this study, juvenile red snapper (Lutjanus campechanus) were exposed to a chemically enhanced water-accommodated fraction (CEWAF) of Corexit 9500/DWH oil (CEWAF) and/or the bacterial pathogen Vibrio anguillarum in treatments designed to detect changes in and recovery of the external microbiota. In fish chronically exposed to CEWAF, immunoglobulin M (IgM) expression significantly decreased between 2 and 4 weeks of exposure, coinciding with elevated liver total polycyclic aromatic hydrocarbons (PAHs). Dysbiosis was detected on fish chronically exposed to CEWAF compared to seawater controls, and addition of a pathogen challenge altered the final microbiota composition. Dysbiosis was prevented by returning fish to clean seawater for 21 days after 1 week of CEWAF exposure. Four fish exhibited lesions during the trial, all of which were exposed to CEWAF but not all of which were exposed to V. anguillarum. This study indicates that month-long exposure to dispersed oil leads to dysbiosis in the external microbiota. As the microbiota is vital to host health, these effects should be considered when determining the total impacts of pollutants in aquatic ecosystems

Real-space measurement of surface roughening

Quantum Matter and Optic

FINAL REPORT -- Missouri River Fish and Wildlife Mitigation Program: Fish Community Monitoring and Habitat Assessment of Off-channel Mitigation Sites

The Missouri River has been developed for flood control, commercial navigation, irrigation, fish and wildlife conservation, municipal water supply, water quality control and hydropower production through a series of congressional acts. However, prior to development, the lower Missouri River was characterized by a highly sinuous to braided channel with abundant log jams, sand bars, secondary channels and cut-off channels. Construction of the Bank Stabilization and Navigation Project (BSNP) converted the lower Missouri River into a narrow, self scouring channel. The active channel downstream of Sioux City, Iowa was as wide as 1.8 km before river modification, but is now confined to a 91.4 m channel. Total river and floodplain habitat altered or destroyed by the BSNP is estimated at 211,246 hectares. The Missouri River Fish and Wildlife Mitigation Project (Mitigation Project) was established to restore fish and wildlife habitat lost by the construction, operation and maintenance of the BSNP. The Water Resources Development Act of 1986 authorized the United States Army Corps of Engineers (COE) to acquire and develop habitat on 12,100 hectares of non public lands and the development of 7,365 hectares of habitat on existing public lands to mitigate habitat losses. The Water Resources Development Act of 1999 authorized an additional 48,016 hectares to the program. The Final Supplemental Environmental Impact Statement (FSEIS) for the expanded Mitigation Project was issued in March of 2003, and it included a preferred alternative proposing the creation of additional shallow water habitat (defined as areas less than 1.5 m deep with a current velocity of less than 0.76 m/s). The preferred action in the FSEIS for the expanded Mitigation Project included creation of 2,833 to 8,094 hectares of shallow water habitat (SWH). In 2005, the Iowa Department of Natural Resources, Nebraska Game and Parks Commission (NGPC), Missouri Department of Conservation and U.S. Fish and Wildlife Service, Columbia Fisheries Resource Office (renamed to Columbia National Fish and Wildlife Conservation Office) were contracted by the COE to monitor and evaluate fish communities of select off-channel aquatic habitat sites that were constructed through the Mitigation Project. Additionally, the NGPC was contracted to collect physical habitat information from the secondary channels that were selected for biological monitoring in the upper channelized section above Kansas City. Sixteen sites selected for monitoring covered a range of aquatic habitats including backwaters and secondary channels with varying levels of engineering and development. Sites from upstream to downstream included Tieville-Decatur Bend (two backwaters), Louisville Bend (backwater), Tyson Island (backwater), California Bend (chute on the Nebraska bank and a chute with connected backwater on the Iowa bank), Tobacco Island (chute), Upper and Lower Hamburg Bends (one chute each), Kansas Bend (two small chutes, treated as one), Deroin Bend (chute), Lisbon Bottom (natural chute), North Overton Bottoms (chute), Tadpole Island (chute) and Tate Island (chute). The study was designed to include three field sampling seasons, but due to delays implementing contracts in 2005 another complete year of sampling was added. Thus, fish community monitoring and habitat assessment of offchannel mitigation sites began in April, 2006 and concluded in October, 2008. The objective of this project was to determine biological performance and functionality of chutes and backwaters and to compare chutes and backwaters in an effort to identify designs most beneficial to native Missouri River fish species. Additionally, this project was designed to help determine if additional modifications are needed at existing mitigation sites, if existing designs are providing a range of habitats, if these habitats are of value to the biological diversity of the Missouri River and if these habitats are of specific value to species of concern or importance, such as pallid sturgeon

Competitive Replacement of Invasive Congeners May Relax Impact on Native Species: Interactions among Zebra, Quagga, and Native Unionid Mussels

Determining when and where the ecological impacts of invasive species will be most detrimental and whether the effects of multiple invaders will be superadditive, or subadditive, is critical for developing global management priorities to protect native species in advance of future invasions. Over the past century, the decline of freshwater bivalves of the family Unionidae has been greatly accelerated by the invasion of Dreissena. The purpose of this study was to evaluate the current infestation rates of unionids by zebra (Dreissena polymorpha) and quagga (D. rostriformis bugensis) mussels in the lower Great Lakes region 25 years after they nearly extirpated native unionids. In 2011–2012, we collected infestation data for over 4000 unionids from 26 species at 198 nearshore sites in lakes Erie, Ontario, and St. Clair, the Detroit River, and inland Michigan lakes and compared those results to studies from the early 1990s. We found that the frequency of unionid infestation by Dreissena recently declined, and the number of dreissenids attached to unionids in the lower Great Lakes has fallen almost ten-fold since the early 1990s. We also found that the rate of infestation depends on the dominant Dreissena species in the lake: zebra mussels infested unionids much more often and in greater numbers. Consequently, the proportion of infested unionids, as well as the number and weight of attached dreissenids were lower in waterbodies dominated by quagga mussels. This is the first large-scale systematic study that revealed how minor differences between two taxonomically and functionally related invaders may have large consequences for native communities they invade

Density-Dependence Mediates the Effects of Temperature on Growth of Juvenile Blue Catfish in Nonnative Habitats

The combined effects of conspecific density and climate warming on the vital rates of invasive fish species have not been well studied, but may be important in predicting how successful they will be in the future. We evaluated the effects of temperature and population density on monthly time series of sizes of age-0 Blue Catfish Ictalurus furcatus in the James, York, and Rappahannock River subestuaries (defined here as tidally influenced bodies of water that feed into the Chesapeake Bay) from 1996 to 2017, using growing degree-days (GDDs, °C day) as a measure of thermal time. Our pre- dictive linear mixed-effects model explained 86% of the variation in the length of age-0 Blue Catfish. In addition, it indi- cated a strong positive effect of temperature on the growth rate of age-0 Blue Catfish, with individual fish biomass during warm years up to 63% higher than during cool years. Growth rate was influenced negatively by the abundance of age-0 and older fish, resulting in at least fourfold differences in the predicted biomass of Blue Catfish by the end of the first year of life depending on conspecific density. We also observed regional differences in the growth rates of Blue Catfish in the three subestuaries we examined; although growth occurred in all subestuaries, growth was highest for the Rappahannock River population even though this river accumulated the fewest GDDs. Rising water temperatures due to global climate change will likely increase the growth rate of age-0 Blue Catfish in the Chesapeake Bay region, potentially intensifying the negative impacts of this invasive species on the ecology of Chesapeake Bay. However, individual populations respond differently to warming temperatures, and thus, potential increases in the growth rate of age-0 Blue Catfish may be par- tially offset by local conditions that may serve to limit growth

Commissioning of the vacuum system of the KATRIN Main Spectrometer

The KATRIN experiment will probe the neutrino mass by measuring the beta-electron energy spectrum near the endpoint of tritium beta-decay. An integral energy analysis will be performed by an electro-static spectrometer (Main Spectrometer), an ultra-high vacuum vessel with a length of 23.2 m, a volume of 1240 m^3, and a complex inner electrode system with about 120000 individual parts. The strong magnetic field that guides the beta-electrons is provided by super-conducting solenoids at both ends of the spectrometer. Its influence on turbo-molecular pumps and vacuum gauges had to be considered. A system consisting of 6 turbo-molecular pumps and 3 km of non-evaporable getter strips has been deployed and was tested during the commissioning of the spectrometer. In this paper the configuration, the commissioning with bake-out at 300{\deg}C, and the performance of this system are presented in detail. The vacuum system has to maintain a pressure in the 10^{-11} mbar range. It is demonstrated that the performance of the system is already close to these stringent functional requirements for the KATRIN experiment, which will start at the end of 2016.Comment: submitted for publication in JINST, 39 pages, 15 figure

Impact of social determinants on antiretroviral therapy access and outcomes entering the era of universal treatment for people living with HIV in Italy

Background: Social determinants are known to be a driving force of health inequalities, even in high income countries. Aim of our study was to determine if these factors can limit antiretroviral therapy (ART) access, outcome and retention in care of people living with HIV (PLHIV) in Italy. Methods: All ART naïve HIV+ patients (pts) of Italian nationality enrolled in the ICONA Cohort from 2002 to 2016 were included. The association of socio-demographic characteristics (age, sex, risk factor for HIV infection, educational level, occupational status and residency area) with time to: ART initiation (from the first positive anti-HIV test), ART regimen discontinuation, and first HIV-RNA < 50 cp/mL, were evaluated by Cox regression analysis, Kaplan Meier method and log-rank test. Results: A total of 8023 HIV+ pts (82% males, median age at first pos anti-HIV test 36 years, IQR: 29-44) were included: 6214 (77.5%) started ART during the study period. Women, people who inject drugs (PWID) and residents in Southern Italy presented the lowest levels of education and the highest rate of unemployment compared to other groups. Females, pts aged > 50 yrs., unemployed vs employed, and people with lower educational levels presented the lowest CD4 count at ART initiation compared to other groups. The overall median time to ART initiation was 0.6 years (yrs) (IQR 0.1-3.7), with a significant decrease over time [2002-2006 = 3.3 yrs. (0.2-9.4); 2007-2011 = 1.0 yrs. (0.1-3.9); 2012-2016 = 0.2 yrs. (0.1-2.1), p < 0.001]. By multivariate analysis, females (p < 0.01) and PWID (p < 0.001), presented a longer time to ART initiation, while older people (p < 0.001), people with higher educational levels (p < 0.001), unemployed (p = 0.02) and students (p < 0.001) were more likely to initiate ART. Moreover, PWID, unemployed vs stable employed, and pts. with lower educational levels showed a lower 1-year probability of achieving HIV-RNA suppression, while females, older patients, men who have sex with men (MSM), unemployed had higher 1-year risk of first-line ART discontinuation. Conclusions: Despite median time to ART start decreased from 2002 to 2016, socio-demographic factors still contribute to disparities in ART initiation, outcome and durability