Brief communication: Unravelling the composition and microstructure of a permafrost core using X-ray computed tomography

The microstructure of permafrost ground contains clues to its formation and hence its preconditioning to future change. We applied X-ray computed microtomography (CT) to obtain high-resolution data (Δx=50 µm) of the composition of a 164 cm long permafrost core drilled in a Yedoma upland in north-eastern Siberia. The CT analysis allowed the microstructures to be directly mapped and volumetric contents of excess ice, gas inclusions, and two distinct sediment types to be quantified. Using laboratory measurements of coarsely resolved core samples, we statistically estimated the composition of the sediment types and used it to indirectly quantify volumetric contents of pore ice, organic matter, and mineral material along the core. We conclude that CT is a promising method for obtaining physical properties of permafrost cores which opens novel research potentials

Image processing of multiphase images obtained via X-ray microtomography: A review

Easier access to X-ray microtomography (lCT) facilities has provided much new insight from high-resolution imaging for various problems in porous media research. Pore space analysis with respect to functional properties usually requires segmentation of the intensity data into different classes. Image segmentation is a nontrivial problem that may have a profound impact on all subsequent image analyses. This review deals with two issues that are neglected in most of the recent studies on image segmentation: (i) focus on multiclass segmentation and (ii) detailed descriptions as to why a specific method may fail together with strategies for preventing the failure by applying suitable image enhancement prior to segmentation. In this way, the presented algorithms become very robust and are less prone to operator bias. Three different test images are examined: a synthetic image with ground-truth information, a synchrotron image of precision beads with three different fluids residing in the pore space, and a lCT image of a soil sample containing macropores, rocks, organic matter, and the soil matrix. Image blur is identified as the major cause for poor segmentation results. Other impairments of the raw data like noise, ring artifacts, and intensity variation can be removed with current image enhancement methods. Bayesian Markov random field segmentation, watershed segmentation, and converging active contours are well suited for multiclass segmentation, yet with different success to correct for partial volume effects and conserve small image features simultaneously.Keywords: X-ray tomography, Soil structure, Multiphase flow, Segmentation, structure analysis, Image processin

Effects of cold atmospheric pressure plasma and disinfecting agents on Candida albicans in root canals of extracted human teeth

Reinfection in endodontically treated teeth is linked to the complexity of the root canal system, which is problematic to reach with conventional disinfection methods. As plasma is expected to have the ability to sanitize narrow areas, the aim of this study was to analyze the effect of cold atmospheric pressure plasma (CAP) on Candida albicans in root canals of extracted human teeth. CAP was applied as mono treatment and in combination with standard endodontic disinfectants (sodium hypochlorite, chlorhexidine and octenidine). Disinfection efficiency was evaluated as reduction of the logarithm of colony forming units per milliliter (log10 CFU/mL) supported by scanning electron microscopy as imaging technique. Plasma alone showed the highest reduction of log10 CFU, suggesting the best disinfection properties of all tested agents. © 2020 The Authors. Journal of Biophotonics published by Wiley-VCH GmbH

Emergent properties of microbial activity in heterogeneous soil microenvironments:Different research approaches are slowly converging, yet major challenges remain

Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data showing that the usual bulk, macroscopic parameters used to characterize soils (e.g., granulometry, pH, soil organic matter and biomass contents) provide insufficient information to describe quantitatively the activity of soil microorganisms and some of its outcomes, like the emission of greenhouse gases. Clearly, new, more appropriate macroscopic parameters are needed, which reflect better the spatial heterogeneity of soils at the microscale (i.e., the pore scale). For a long time, spectroscopic and microscopic tools were lacking to quantify processes at that scale, but major technological advances over the last 15 years have made suitable equipment available to researchers. In this context, the objective of the present article is to review progress achieved to date in the significant research program that has ensued. This program can be rationalized as a sequence of steps, namely the quantification and modeling of the physical-, (bio)chemical-, and microbiological properties of soils, the integration of these different perspectives into a unified theory, its upscaling to the macroscopic scale, and, eventually, the development of new approaches to measure macroscopic soil characteristics. At this stage, significant progress has been achieved on the physical front, and to a lesser extent on the (bio)chemical one as well, both in terms of experiments and modeling. In terms of microbial aspects, whereas a lot of work has been devoted to the modeling of bacterial and fungal activity in soils at the pore scale, the appropriateness of model assumptions cannot be readily assessed because relevant experimental data are extremely scarce. For the overall research to move forward, it will be crucial to make sure that research on the microbial components of soil systems does not keep lagging behind the work on the physical and (bio)chemical characteristics. Concerning the subsequent steps in the program, very little integration of the various disciplinary perspectives has occurred so far, and, as a result, researchers have not yet been able to tackle the scaling up to the macroscopic level. Many challenges, some of them daunting, remain on the path ahead

Lessons from a landmark 1991 article on soil structure: distinct precedence of non-destructive assessment and benefits of fresh perspectives in soil research

In 1991, at the launch of a national symposium devoted to soil structure, the Australian Society of Soil Science invited Professor John Letey to deliver a keynote address, which was later published in the society’s journal. In his lecture, he shared the outcome of his reflexion about what the assessment of soil structure should amount to, in order to produce useful insight into the functioning of soils. His viewpoint was that the focus should be put on the openings present in the structure, rather than on the chunks of material resulting from its mechanical dismantlement. In the present article, we provide some historical background for Letey’s analysis, and try to explain why it took a number of years for the paradigm shift that he advocated to begin to occur. Over the last decade, his perspective that soil structure needs to be characterised via non-destructive methods appears to have gained significant momentum, which is likely to increase further in the near future, as we take advantage of recent technological advances. Other valuable lessons that one can derive from Letey’s pioneering article relate to the extreme value for everyone, even neophytes, to constantly ask questions about where research on given topics is heading, what its goals are, and whether the methods that are used at a certain time are optimal

Rethinking irrigation modernisation: Realising multiple objectives through the integration of fisheries

Irrigation has been, and will remain, instrumental in addressing water security (Sustainable Development Goal (SDG) 6), food insecurity (SDG 2) and poverty (SDG 1) goals. However, the global context in which irrigation takes place is changing rapidly. A call for healthier and more sustainable food systems is placing new demands on how irrigation is developed and managed. Growing pressures from competing water uses in the domestic and industrial sectors, as well increasing environmental awareness, mean irrigation is increasingly called on to perform better, delivering acceptable returns on investment and simultaneously improving food security, rural livelihoods and nutrition, as well as supporting environmental conservation. Better integration of fisheries (including aquaculture) in irrigation planning, investment and management can contribute to the modernisation of irrigation and the achievement of the multiple objectives that it is called on to deliver. A framework illustrating how fisheries can be better integrated with irrigation, and how the two can complement each other across a range of scales, from scheme to catchment and, ultimately, national level, is presented

Von akustischen Medien zur auditiven Kultur : zum Verhältnis von Medienwissenschaft und Sound Studies

2. Hrsg. des Heftes: Axel Volmar Prof. Dr. Jens Schröter, Dr. Sebastian Gießmann und J-Prof. Dr. Benjamin Beil sind Herausgeber der Reihe. Die Herausgeber der einzelnen Hefte sind renommierte Wissenschaftler und -innen aus dem In- und Ausland.Die Beiträge dieser Navigationen-Ausgabe möchten mit je eigenen wissenschaftsgeschichtlichen, medienarchäologischen, kulturhistorischen, musiksoziologischen und ethnographischen Schwerpunktsetzungen zeigen, auf welche Weise sowohl die Medienwissenschaft als auch die Musikwissenschaft von einem solchen Dialog profitieren. In umgekehrter Stoßrichtung können die einzelnen Studien zugleich verdeutlichen, was die medienwissenschaftliche Forschung durch ihre thematische Ausrichtung, ihre theoretischen Ansätze und methodischen Werkzeuge zur weiteren Elaborierung der ›Sound Studies‹ und des Gegenstandsbereichs ›Auditive Kultur‹ beitragen kann

Microtubules as Platforms for Assaying Actin Polymerization In Vivo

The actin cytoskeleton is continuously remodeled through cycles of actin filament assembly and disassembly. Filaments are born through nucleation and shaped into supramolecular structures with various essential functions. These range from contractile and protrusive assemblies in muscle and non-muscle cells to actin filament comets propelling vesicles or pathogens through the cytosol. Although nucleation has been extensively studied using purified proteins in vitro, dissection of the process in cells is complicated by the abundance and molecular complexity of actin filament arrays. We here describe the ectopic nucleation of actin filaments on the surface of microtubules, free of endogenous actin and interfering membrane or lipid. All major mechanisms of actin filament nucleation were recapitulated, including filament assembly induced by Arp2/3 complex, formin and Spir. This novel approach allows systematic dissection of actin nucleation in the cytosol of live cells, its genetic re-engineering as well as screening for new modifiers of the process