Review of oesophageal atresia and tracheoesophageal fistula in hospital sultanah bahiyah, alor star 2000 - 2009

Esophageal atresia (EA) and tracheoesophageal fistula (TEF) are one of the congenital anomaly occurring in the newborns with the incidence of 1 in 2500 births seen worldwide. There were 47 patients with esophageal atresia admitted to HSB from January 2000 to December 2009, out of which 26 (55%) were males and 21 (45%) females. The distribution of patients by race were 34 Malays (72%), 9 Chinese (19%) and 4 Indians (9%). Out of 47 babies with TEF and EA, 36% of them had polyhdromnios in the antenatal evaluation. There were only 3 types of EA/TEF seen; Type A (9%), Type C (87%) and Type E (4%). The birth weight of the babies range from 0.8 kg to 4.0 kg. The smallest surviving baby weighing 1.1 kg. There was a significant association with the outcome of the surgery (p0.05). 23 (49%) of them were born with congenital malformation and there was a significant association with the outcome of the surgery (p<0.05). Based on the chest roentgenogram, 20 (43%) of them had pneumonia with significant association with the outcome (p<0.05). The mortality rate is 23% and the causes of death were severe pneumonia (36%), severe renal failure (18%), severe cardiac malformation (18%) and multiple congenital malformations (28%). Bremen classification is most suitable in determining the prognosis of the babies with TEF and EA in Hospital Sultanah Bahiyah, Alor Star. In conclusion, the outcome of EA and TEF is determined mainly by birth weight, congenital malformations and presence of preoperative pneumonia

Hydrodynamic Behaviour Change at Rambai River Outlet, Juru River Basin, Penang

ABSTRAC

Curation of complex, context-dependent immunological data

BACKGROUND: The Immune Epitope Database and Analysis Resource (IEDB) is dedicated to capturing, housing and analyzing complex immune epitope related data . DESCRIPTION: To identify and extract relevant data from the scientific literature in an efficient and accurate manner, novel processes were developed for manual and semi-automated annotation. CONCLUSION: Formalized curation strategies enable the processing of a large volume of context-dependent data, which are now available to the scientific community in an accessible and transparent format. The experiences described herein are applicable to other databases housing complex biological data and requiring a high level of curation expertise

A genetic comparison of two alleged subspecies of P hilippine cynomolgus macaques

Two subspecies of cynomolgus macaques ( Macaca fascicularis ) are alleged to co‐exist in the Philippines, M. f. philippensis in the north and M. f. fascicularis in the south. However, genetic differences between the cynomolgus macaques in the two regions have never been studied to document the propriety of their subspecies status. We genotyped samples of cynomolgus macaques from Batangas in southwestern Luzon and Zamboanga in southwestern Mindanao for 15 short tandem repeat (STR) loci and sequenced an 835 bp fragment of the mtDNA of these animals. The STR genotypes were compared with those of cynomolgus macaques from southern Sumatra, Singapore, Mauritius and Cambodia, and the mtDNA sequences of both Philippine populations were compared with those of cynomolgus macaques from southern Sumatra, Indonesia and Sarawak, Malaysia. We conducted STRUCTURE and PCA analyses based on the STRs and constructed a median joining network based on the mtDNA sequences. The Philippine population from Batangas exhibited much less genetic diversity and greater genetic divergence from all other populations, including the Philippine population from Zamboanga. Sequences from both Batangas and Zamboanga were most closely related to two different mtDNA haplotypes from Sarawak from which they are apparently derived. Those from Zamboanga were more recently derived than those from Batangas, consistent with their later arrival in the Philippines. However, clustering analyses do not support a sufficient genetic distinction of cynomolgus macaques from Batangas from other regional populations assigned to subspecies M. f. fascicularis to warrant the subspecies distinction M. f. philippensis . Am J Phys Anthropol 155:136–148, 2014. © 2014 Wiley Periodicals, Inc.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/108326/1/ajpa22564.pd

Disentangling the Taxonomy of the Mahseers (Tor spp.) of Malaysia: An Integrated Approach Using Morphology, Genetics and Historical Records

The establishment of appropriate taxonomic designations is essential for the effective management of fishery resources. Despite over a century of explorations and research, the cyprinid genus Tor represents a group of large-bodied freshwater fishes whose taxonomy and systematics remains poorly known. While five species of Tor are currently listed as “endangered” on the IUCN Red List, a further five out of 18 species currently recognized are assessed as “data deficient,” with at least one undescribed species, believed to be on the brink of extinction (i.e., the Humpback Mahseer endemic to the Cauvery River in India). Tor mahseers represent a suitable model for the application of an integrated approach using morphology, genetics, and historical records to resolve species identities, where one or more of these fundamental approaches may have been deficient in the past. Focusing specifically on the taxonomy and nomenclature of the Tor species recorded from Peninsular Malaysia, one of the aims of this review is to define the identity of two nominal species, T. tambra and T. tambroides. Original descriptions of these two nominal species contain little or practically no characters to distinguish them, and partly explains why secondary literature fails to conclusively determine species boundaries. A phylogenetic analysis of mahseer specimens from this region, based on publicly available and newly sequenced mitochondrial COX1 genes, does not support species designation based on previously established morphological features. More importantly, multiple tree-based species delimitation approaches showed that previously sequenced T. tambroides from Peninsular Malaysia and the newly described Tor species from Vietnam could not be delimited from the topotypic Tor tambra. A wider investigation of mahseer taxonomy covering all of Southeast Asia, using such an integrated approach is recommended to resolve the ambiguous taxonomy and is of profound importance for the conservation and management of exploited and farmed populations of these highly valued and iconic fish

Design and utilization of epitope-based databases and predictive tools

In the last decade, significant progress has been made in expanding the scope and depth of publicly available immunological databases and online analysis resources, which have become an integral part of the repertoire of tools available to the scientific community for basic and applied research. Herein, we present a general overview of different resources and databases currently available. Because of our association with the Immune Epitope Database and Analysis Resource, this resource is reviewed in more detail. Our review includes aspects such as the development of formal ontologies and the type and breadth of analytical tools available to predict epitopes and analyze immune epitope data. A common feature of immunological databases is the requirement to host large amounts of data extracted from disparate sources. Accordingly, we discuss and review processes to curate the immunological literature, as well as examples of how the curated data can be used to generate a meta-analysis of the epitope knowledge currently available for diseases of worldwide concern, such as influenza and malaria. Finally, we review the impact of immunological databases, by analyzing their usage and citations, and by categorizing the type of citations. Taken together, the results highlight the growing impact and utility of immunological databases for the scientific community