Nighttime wind and scalar variability within and above an Amazonian canopy

Nocturnal turbulent kinetic energy (TKE) and fluxes of energy, CO2 and O3 between the Amazon forest and the atmosphere are evaluated for a 20-day campaign at the Amazon Tall Tower Observatory (ATTO) site. The distinction of these quantities between fully turbulent (weakly stable) and intermittent (very stable) nights is discussed. Spectral analysis indicates that low-frequency, nonturbulent fluctuations are responsible for a large portion of the variability observed on intermittent nights. In these conditions, the lowfrequency exchange may dominate over the turbulent transfer. In particular, we show that within the canopy most of the exchange of CO2 and H2O happens on temporal scales longer than 100 s. At 80 m, on the other hand, the turbulent fluxes are almost absent in such very stable conditions, suggesting a boundary layer shallower than 80 m. The relationship between TKE and mean winds shows that the stable boundary layer switches from the very stable to the weakly stable regime during intermittent bursts of turbulence. In general, fluxes estimated with long temporal windows that account for low-frequency effects are more dependent on the stability over a deeper layer above the forest than they are on the stability between the top of the canopy and its interior, suggesting that low-frequency processes are controlled over a deeper layer above the forest. © Author(s) 2018

Intra- and interannual changes in isoprene emission from central Amazonia

Isoprene emissions are a key component in biosphere-atmosphere interactions, and the most significant global source is the Amazon rainforest. However, intra- and interannual variations in biological and environmental factors that regulate isoprene emission from Amazonia are not well understood and, thereby, are poorly represented in models. Here, with datasets covering several years of measurements at the Amazon Tall Tower Observatory (ATTO) in central Amazonia, Brazil, we (1) quantified canopy profiles of isoprene mixing ratios across seasons of normal and anomalous years and related them to the main drivers of isoprene emission - solar radiation, temperature, and leaf phenology; (2) evaluated the effect of leaf age on the magnitude of the isoprene emission factor (Es) from different tree species and scaled up to canopy with intra- and interannual leaf age distribution derived by a phenocam; and (3) adapted the leaf age algorithm from the Model of Emissions of Gases and Aerosols from Nature (MEGAN) with observed changes in Es across leaf ages. Our results showed that the variability in isoprene mixing ratios was higher between seasons (max during the dry-to-wet transition seasons) than between years, with values from the extreme 2015 El Niño year not significantly higher than in normal years. In addition, model runs considering in situ observations of canopy Es and the modification on the leaf age algorithm with leaf-level observations of Es presented considerable improvements in the simulated isoprene flux. This shows that MEGAN estimates of isoprene emission can be improved when biological processes are mechanistically incorporated into the model.This research was supported by the German Federal Ministry of Education and Research, BMBF funds 01LB1001A; Brazilian Ministry of Science, Technology, Innovation and Communication; FINEP/MCTIC contract 01.11.01248.00); UEA; FAPEAM; LBA/INPA; and SDS/CEUC/RDS-Uatumã. It was also supported by grant nos. NSF-PRFB-1711997 and NSF-1754163. The article processing charges for this open-access publication were covered by the Max Planck Society.Peer reviewe

The Amazon Tall Tower Observatory (ATTO): Overview of pilot measurements on ecosystem ecology, meteorology, trace gases, and aerosols

The Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It has already been changed significantly by human activities, and more pervasive change is expected to occur in the coming decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region, as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measurements comprise continuous monitoring of carbon dioxide, carbon monoxide, methane, and ozone at five to eight different heights, complemented by a variety of additional species measured during intensive campaigns (e.g., VOC, NO, NO2, and OH reactivity). Aerosol optical, microphysical, and chemical measurements are being made above the canopy as well as in the canopy space. They include aerosol light scattering and absorption, fluorescence, number and volume size distributions, chemical composition, cloud condensation nuclei (CCN) concentrations, and hygroscopicity. In this paper, we discuss the scientific context of the ATTO observatory and present an overview of results from ecological, meteorological, and chemical pilot studies at the ATTO site. © Author(s) 2015

Reactive Trace Gas and Aerosol Fluxes (Chapter 9)

Quantifying the atmosphere-surface exchange of reactive trace gases and aerosols is extremely important for a full understanding of biogeochemical cycles and their implications for air quality and climate. However, turbulent fluxes of reactive gases such as ozone and volatile organic compounds (VOC) as well as aerosol particles are still difficult to measure. Chemical reactions contribute to changes in trace gas or aerosol concentrations, and production or loss processes have to be carefully separated from turbulent transport. Also, for many trace gas measurements and for size-resolved and chemically speciated aerosol measurements, instruments are limited with respect to time resolution, sensitivity, and accuracy, which restricts their application in micrometeorological techniques. Here, we present flux measurements of reactive trace gases and aerosols above tall vegetation. We focus on ozone deposition and its implications for the NO/NO2/O3 triad, biogenic emissions of volatile organic compounds and their subsequent oxidation reactions, and finally, turbulent aerosol fluxes in a spruce forest ecosystem

Influence of Atmospheric Stability on the flow dynamics within and above a dense Amazonian forest

This study provides a detailed analysis of the influence of atmospheric stratification on the flow dynamics above and within a dense forest for a 19-days campaign at the Amazon Tall Tower Observatory (ATTO) site. Observations taken at seven levels within and above the forest along an 81-meter and a 325-meter towers allow a unique investigation of the vertical evolution of the turbulent field in the roughness sublayer and in the surface layer above it. Five different stability classes were defined on the basis of the behavior of turbulent heat, momentum and CO2 fluxes and variance ratio as a function of h/L stability parameter (where h is the canopy height and L is the Obukhov length). The novelty is the identification of a ‘super-stable’ (SS) regime (h/L>3) characterized by extremely low wind speeds, the almost completely suppression of turbulence and a clear dominance of submeso motions both above and within the forest. The obtained data classification was used to study the influence of atmospheric stratification on the vertical profiles of turbulent statistics. The spectral characteristics of coherent structures and of submeso motions (that may influence the energy and mass exchange above the Amazon forest) have been analyzed by wavelet analyses. The role of the main structures in momentum, heat and CO2 transport at the different levels inside and above the forest and in different diabatic conditions was thoroughly investigated through multiresolution and quadrant analyses. In unstable and neutral stability, the flow above the canopy appears modulated by ejections, whereas downward and intermittent sweeps dominate the transport inside the canopy. In the roughness sublayer (z £ 2h) the coherent structures dominating the transport within and above the canopy have a characteristic temporal scale of about 100 sec, whereas above this layer the transport is mainly driven by larger scale convection (temporal scale of about 15 min). In stable conditions the height of roughness sublayer progressively decreases with increasing stability reaching the minimum value (z<1.35h) in the SS regime. Above the canopy the flow is clearly dominated by ejections but characterized by a higher intermittency mainly in SS conditions. On the other hand, the rapid shear stress absorption in the highest part of the vegetation produces a less clear dominance of sweeps and a less defined role of odd and even quadrants inside the canopy in the transport of momentum, heat and CO2. In the weakly stable regime (0.1