Rapid oxygenation of Earths atmosphere 2.33 billion years ago

Molecular oxygen (O[subscript 2]) is, and has been, a primary driver of biological evolution and shapes the contemporary landscape of Earth’s biogeochemical cycles. Although “whiffs” of oxygen have been documented in the Archean atmosphere, substantial O2 did not accumulate irreversibly until the Early Paleoproterozoic, during what has been termed the Great Oxygenation Event (GOE). The timing of the GOE and the rate at which this oxygenation took place have been poorly constrained until now. We report the transition (that is, from being mass-independent to becoming mass-dependent) in multiple sulfur isotope signals of diagenetic pyrite in a continuous sedimentary sequence in three coeval drill cores in the Transvaal Supergroup, South Africa. These data precisely constrain the GOE to 2.33 billion years ago. The new data suggest that the oxygenation occurred rapidly—within 1 to 10 million years—and was followed by a slower rise in the ocean sulfate inventory. Our data indicate that a climate perturbation predated the GOE, whereas the relationships among GOE, “Snowball Earth” glaciation, and biogeochemical cycling will require further stratigraphic correlation supported with precise chronologies and paleolatitude reconstructions.National Science Foundation (U.S.) (EAR-1338810)National Natural Science Foundation (China) ((grant no. 41472170)Wellcome Trust Sanger Institute ( 111 Project grant no. B08030)National Basic Research Program of China (973 Program)United States. National Aeronautics and Space Administration (NASA Astrobiology Institute award NNA13AA90A

Effects of variability of local winds on cross ventilation for a simplified building within a full-scale asymmetric array: overview of the Silsoe field campaign

The large body of natural ventilation research, rarely addresses the effects of the urban area on ventilation rates. A novel contribution to this gap is made by the REFRESH cube campaign (RCC). During 9 months of observations, the Silsoe cube was both isolated and surrounded by a limited asymmetrical staggered array. A wide range of variables were measured continuously, including: local, reference and internal flow, stability, background meteorological conditions, internal temperature, and ventilation rates (pressure difference techniques for cross ventilated cases). This paper tests the impact of the array on the relation between local and reference wind speeds as modified by wind direction and on cross ventilation rates. The presence of the array causes a 50% to 90% reduction in normalised ventilation rate when the reference wind direction is normal to the cube. The decrease in natural ventilation varies with wind direction with large amounts of scatter for both setups. The relation between local and reference wind speeds for the array case had two characteristic responses, not explained by reference wind (speed or direction) nor sensitive to averaging period, turbulence intensity or temperature differences. Given the singular response of the CIBSE approach, it is unable to capture these conditions

Bibliografía

Reaction of the anion-deficient, cation-ordered perovskite phase Ba₂YFeO₅ with 80 atm of oxygen pressure at 410 °C results in the formation of the Fe⁴⁺ phase Ba₂YFeO_5.5. The topochemical insertion of oxide ions lifts the inversion symmetry of the centrosymmetric host phase, Ba₂YFeO₅ (space group <i>P</i>2₁/<i>n</i>), to yield a noncentrosymmetric (NCS) phase Ba₂YFeO_5.5 (space group <i>Pb</i>2₁<i>m</i> (No. 26), <i>a</i> = 12.1320(2) Å, <i>b</i> = 6.0606(1) Å, <i>c</i> = 8.0956(1) Å, <i>V</i> = 595.257(2) ų) confirmed by the observation of second-harmonic generation. Dielectric and PUND ferroelectric measurements, however, show no evidence for a switchable ferroelectric polarization, limiting the material to pyroelectric behavior. Magnetization and low-temperature neutron diffraction data indicate that Ba₂YFeO_5.5 undergoes a magnetic transition at 20 K to adopt a state which exhibits a combination of ferromagnetic and antiferromagnetic order. The symmetry breaking from centrosymmetric to polar noncentrosymmetric, which occurs during the topochemical oxidation process is discussed on the basis of induced lattice strain and an electronic instability and represents a new strategy for the preparation of NCS materials that readily incorporate paramagnetic transition metal centers

Phase Behavior of Polyelectrolyte Block Copolymers in Mixed Solvents

We have studied the phase behavior of the poly(n-butyl acrylate)-b-poly(acrylic acid) block copolymer in a mixture of two miscible solvents, water and tetrahydrofuran (THF). The techniques used to examine the different polymers, structures and phases formed in mixed solvents were static and dynamic light scattering, small-angle neutron scattering, nuclear magnetic resonance and fluorescence microscopy. By lowering the water/THF mixing ratio X, the sequence unimers, micron-sized droplets, polymeric micelles was observed. The transition between unimers and the micron-sized droplets occurred at X = 0.75, whereas the microstructuration into core-shell polymeric micelles was effective below X = 0.4. At intermediate mixing ratios, a coexistence between the micron-sized droplets and the polymeric micelles was observed. Combining the different aforementioned techniques, it was concluded that the droplet dispersion resulted from a solvent partitioning that was induced by the hydrophobic blocks. Comparison of poly(n-butyl acrylate) homopolymers and poly(n-butyl acrylate)-b-poly(acrylic acid) block copolymers suggested that the droplets were rich in THF and concentrated in copolymers and that they were stabilized by the hydrophilic poly(acrylic acid) moieties.Comment: 11 pages, 12 figures, to appear in Macromolecule

Search and modelling of remnant radio galaxies in the LOFAR Lockman Hole field

Accepted for publication in Astronomy & Astrophysics. Reproduced with permission from Astronomy & Astrophysics, © 2017 ESO.The phase of radio galaxy evolution after the jets have switched off, often referred to as the remnant phase, is poorly understood and very few sources in this phase are known. In this work we present an extensive search for remnant radio galaxies in the Lockman Hole, a well-studied extragalactic field. We create mock catalogues of low-power radio galaxies based on Monte Carlo simulations to derive first-order predictions of the fraction of remnants in radio flux limited samples for comparison with our Lockman-Hole sample. We have combined LOFAR observations at 150 MHz with public surveys at higher frequencies to perform a complete selection and have used, for the first time, a combination of spectral criteria (e.g. the classical ultra-steep spectral index and high spectral curvature) as well as morphological criteria (e.g. low radio core prominence and relaxed shapes). Mock catalogues of radio galaxies are created based on existing spectral and dynamical evolution models combined with observed source properties. We have identified 23 candidate remnant radio galaxies which cover a variety of morphologies and spectral characteristics. We suggest that these different properties are related to different stages of the remnant evolution. We find that ultra-steep spectrum remnants represent only a fraction of our remnant sample suggesting a very rapid luminosity evolution of the radio plasma. Results from mock catalogues demonstrate the importance of dynamical evolution in the remnant phase of low-power radio galaxies to obtain fractions of remnant sources consistent with our observations. Moreover, these results confirm that ultra-steep spectrum remnants represent only a subset of the entire population ($\sim$50%) when frequencies higher than 1400 MHz are not included in the selection process, and that they are biased towards old ages.Peer reviewe

Sequencing of 15 622 Gene-bearing BACs Clarifies the Gene-dense Regions of the Barley Genome

Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome (BACs) in the physical map were sequenced, fine structure was limited. To gain access to the gene-containing portion of the barley genome at high resolution, we identified and sequenced 15 622 BACs representing the minimal tiling path of 72 052 physical-mapped gene-bearing BACs. This generated ~1.7 Gb of genomic sequence containing an estimated 2/3 of all Morex barley genes. Exploration of these sequenced BACs revealed that although distal ends of chromosomes contain most of the gene-enriched BACs and are characterized by high recombination rates, there are also gene-dense regions with suppressed recombination. We made use of published map-anchored sequence data from Aegilops tauschii to develop a synteny viewer between barley and the ancestor of the wheat D-genome. Except for some notable inversions, there is a high level of collinearity between the two species. The software HarvEST:Barley provides facile access to BAC sequences and their annotations, along with the barley–Ae. tauschii synteny viewer. These BAC sequences constitute a resource to improve the efficiency of marker development, map-based cloning, and comparative genomics in barley and related crops. Additional knowledge about regions of the barley genome that are gene-dense but low recombination is particularly relevant

The mandible and dentition of Borealestes serendipitus (Docodonta) from the Middle Jurassic of Skye, Scotland

The Middle Jurassic docodont Borealestes serendipitus was the first Mesozoic mammal found in Scotland over 40 years ago. Its affinities and morphology have remained poorly understood. Although multiple dentary fragments and isolated teeth have been recovered from Scotland and England, they have not yet been described in sufficient detail. We report new, more complete specimens collected during recent field work on Skye, Scotland, combined with previously collected material. This includes upper and lower dentition and an almost complete right dentary. We present an updated description and diagnosis of the genus Borealestes, based on high-resolution micro-computed tomography (micro-CT) and synchrotron scans. We identify seven key features that distinguish Borealestes from other docodonts, including a pronounced a–c crest, absence of the a–g crest on cusp a, an anterior fovea at the buccolingual midpoint of the upper molar, and the convergence of the Meckel’s groove with the ventral margin of the mandible. We also present a revised diagnosis for the second species, B. mussettae. Our phylogenetic analysis supports a clade formed by Borealestes, Haldanodon, Docofossor, and Docodon. Ontogenetic variation in the mandibular morphology of Borealestes is similar to that seen in Docodon and Haldanodon, with the delayed emergence of the ultimate lower molar, the shift of the last molar to the front of the coronoid process, and a posterior shift of the Meckel’s sulcus in successively older individuals. This supports a distinctive growth pattern in the clade including Borealestes and Docodon, one that may be present in Docodonta as a whole

Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians

Abstract: Of the 1.8 billion people worldwide infected with Mycobacterium tuberculosis, 5–15% will develop active tuberculosis (TB). Approximately half will progress to active TB within the first 18 months after infection, presumably because they fail to mount an effective initial immune response. Here, in a genome-wide genetic study of early TB progression, we genotype 4002 active TB cases and their household contacts in Peru. We quantify genetic heritability (hg2) of early TB progression to be 21.2% (standard error 0.08). This suggests TB progression has a strong genetic basis, and is comparable to traits with well-established genetic bases. We identify a novel association between early TB progression and variants located in a putative enhancer region on chromosome 3q23 (rs73226617, OR = 1.18; P = 3.93 × 10−8). With in silico and in vitro analyses we identify rs73226617 or rs148722713 as the likely functional variant and ATP1B3 as a potential causal target gene with monocyte specific function

Use of linear mixed models for genetic evaluation of gestation length and birth weight allowing for heavy-tailed residual effects

<p>Abstract</p> <p>Background</p> <p>The distribution of residual effects in linear mixed models in animal breeding applications is typically assumed normal, which makes inferences vulnerable to outlier observations. In order to mute the impact of outliers, one option is to fit models with residuals having a heavy-tailed distribution. Here, a Student's-<it>t </it>model was considered for the distribution of the residuals with the degrees of freedom treated as unknown. Bayesian inference was used to investigate a bivariate Student's-<it>t </it>(BS<it>t</it>) model using Markov chain Monte Carlo methods in a simulation study and analysing field data for gestation length and birth weight permitted to study the practical implications of fitting heavy-tailed distributions for residuals in linear mixed models.</p> <p>Methods</p> <p>In the simulation study, bivariate residuals were generated using Student's-<it>t </it>distribution with 4 or 12 degrees of freedom, or a normal distribution. Sire models with bivariate Student's-<it>t </it>or normal residuals were fitted to each simulated dataset using a hierarchical Bayesian approach. For the field data, consisting of gestation length and birth weight records on 7,883 Italian Piemontese cattle, a sire-maternal grandsire model including fixed effects of sex-age of dam and uncorrelated random herd-year-season effects were fitted using a hierarchical Bayesian approach. Residuals were defined to follow bivariate normal or Student's-<it>t </it>distributions with unknown degrees of freedom.</p> <p>Results</p> <p>Posterior mean estimates of degrees of freedom parameters seemed to be accurate and unbiased in the simulation study. Estimates of sire and herd variances were similar, if not identical, across fitted models. In the field data, there was strong support based on predictive log-likelihood values for the Student's-<it>t </it>error model. Most of the posterior density for degrees of freedom was below 4. Posterior means of direct and maternal heritabilities for birth weight were smaller in the Student's-<it>t </it>model than those in the normal model. Re-rankings of sires were observed between heavy-tailed and normal models.</p> <p>Conclusions</p> <p>Reliable estimates of degrees of freedom were obtained in all simulated heavy-tailed and normal datasets. The predictive log-likelihood was able to distinguish the correct model among the models fitted to heavy-tailed datasets. There was no disadvantage of fitting a heavy-tailed model when the true model was normal. Predictive log-likelihood values indicated that heavy-tailed models with low degrees of freedom values fitted gestation length and birth weight data better than a model with normally distributed residuals.</p> <p>Heavy-tailed and normal models resulted in different estimates of direct and maternal heritabilities, and different sire rankings. Heavy-tailed models may be more appropriate for reliable estimation of genetic parameters from field data.</p