Manganese-containing Prussian blue nanoparticles for imaging of pediatric brain tumors

Pediatric brain tumors (PBTs) are a leading cause of death in children. For an improved prognosis in patients with PBTs, there is a critical need to develop molecularly-specific imaging agents to monitor disease progression and response to treatment. In this paper, we describe manganese-containing Prussian blue nanoparticles as agents for molecular magnetic resonance imaging (MRI) and fluorescence-based imaging of PBTs. Our core-shell nanoparticles consist of a core lattice structure that incorporates and retains paramagnetic Mn2+ ions, and generates MRI contrast (both negative and positive). The biofunctionalized shell is comprised of fluorescent avidin, which serves the dual purpose of enabling fluorescence imaging and functioning as a platform for the attachment of biotinylated ligands that target PBTs. The surfaces of our nanoparticles are modified with biotinylated antibodies targeting neuron-glial antigen 2 or biotinylated transferrin. Both neuron-glial antigen 2 and the transferrin receptor are protein markers overexpressed in PBTs. We describe the synthesis, biofunctionalization, and characterization of these multimodal nanoparticles. Further, we demonstrate the MRI and fluorescence imaging capabilities of manganese-containing Prussian blue nanoparticles in vitro. Finally, we demonstrate the potential of these nanoparticles as PBT imaging agents by measuring their organ and brain biodistribution in an orthotopic mouse model of PBTs using ex vivo fluorescence imaging

Automated assessment and tracking of human body thermal variations using unsupervised clustering

The presented approach addresses a review of the overheating that occurs during radiological examinations, such as magnetic resonance imaging, and a series of thermal experiments to determine a thermally suitable fabric material that should be used for radiological gowns. Moreover, an automatic system for detecting and tracking of the thermal fluctuation is presented. It applies hue-saturated-value-based kernelled k-means clustering, which initializes and controls the points that lie on the region-of-interest (ROI) boundary. Afterward, a particle filter tracks the targeted ROI during the video sequence independently of previous locations of overheating spots. The proposed approach was tested during experiments and under conditions very similar to those used during real radiology exams. Six subjects have voluntarily participated in these experiments. To simulate the hot spots occurring during radiology, a controllable heat source was utilized near the subject’s body. The results indicate promising accuracy for the proposed approach to track hot spots. Some approximations were used regarding the transmittance of the atmosphere, and emissivity of the fabric could be neglected because of the independence of the proposed approach for these parameters. The approach can track the heating spots continuously and correctly, even for moving subjects, and provides considerable robustness against motion artifact, which occurs during most medical radiology procedures

Response Time Analysis of Dataflow Applications on a Many-Core Processor with Shared-Memory and Network-on-Chip

International audienc

Structural Imaging of Native Cryo-Preserved Secondary Cell Walls Reveals the Presence of Macrofibrils and Their Formation Requires Normal Cellulose, Lignin and Xylan Biosynthesis

The woody secondary cell walls of plants are the largest repository of renewable carbon biopolymers on the planet. These walls are made principally from cellulose and hemicelluloses and are impregnated with lignin. Despite their importance as the main load bearing structure for plant growth, as well as their industrial importance as both a material and energy source, the precise arrangement of these constituents within the cell wall is not yet fully understood. We have adapted low temperature scanning electron microscopy (cryo-SEM) for imaging the nanoscale architecture of angiosperm and gymnosperm cell walls in their native hydrated state. Our work confirms that cell wall macrofibrils, cylindrical structures with a diameter exceeding 10 nm, are a common feature of the native hardwood and softwood samples. We have observed these same structures in Arabidopsis thaliana secondary cell walls, enabling macrofibrils to be compared between mutant lines that are perturbed in cellulose, hemicellulose, and lignin formation. Our analysis indicates that the macrofibrils in Arabidopsis cell walls are dependent upon the proper biosynthesis, or composed, of cellulose, xylan, and lignin. This study establishes that cryo-SEM is a useful additional approach for investigating the native nanoscale architecture and composition of hardwood and softwood secondary cell walls and demonstrates the applicability of Arabidopsis genetic resources to relate fibril structure with wall composition and biosynthesis.Peer reviewe

Structural differences of cell walls in earlywood and latewood of Pinus sylvestris and their contribution to biomass recalcitrance

Scots pine (Pinus sylvestris L.) is an evergreen coniferous tree with wide distribution and good growth performance in a range of habitats. Therefore, wood from P. sylvestris is produced in many managed forests and is frequently used in industry. Despite the importance of pine wood, we still do not fully understand its molecular structure what limits improvements in its processing. One of the basic features leading to variation in wood properties is the presence of earlywood and latewood which form annual growth rings. Here, we characterise biochemical traits that differentiate cell walls of earlywood and latewood in Scots pine. We discover that latewood is less recalcitrant to enzymatic digestion, with galactoglucomannan showing particularly pronounced difference in accessibility. Interestingly, characterisation of lignin reveals a higher proportion of coniferaldehydes in pine latewood and suggests the presence of a different linkage landscape in this wood type. With complementary analysis of wood polysaccharides this enabled us to propose the first detailed molecular model of earlywood and latewood and to conclude that the variation in lignin structure is likely the main determinant of differences in recalcitrance observed between the two wood types in pine. Our discoveries lay the foundation for improvements in industrial processes that use pine wood since we show clear pathways for increasing the efficiency of enzymatic processing of this renewable material. Our work will help guide future breeding of pine trees with desired timber properties and can help link molecular structure of softwood cell walls to function of the different types of xylem in conifers

Microscopy and chemical analyses reveal flavone-based woolly fibres extrude from micron-sized holes in glandular trichomes of Dionysia tapetodes.

BackgroundDionysia tapetodes, a small cushion-forming mountainous evergreen in the Primulaceae, possesses a vast surface-covering of long silky fibres forming the characteristic "woolly" farina. This contrasts with some related Primula which instead form a fine powder. Farina is formed by specialized cellular factories, a type of glandular trichome, but the precise composition of the fibres and how it exits the cell is poorly understood. Here, using a combination of cell biology (electron and light microscopy) and analytical chemical techniques, we present the principal chemical components of the wool and its mechanism of exit from the glandular trichome.ResultsWe show the woolly farina consists of micron-diameter fibres formed from a mixture of flavone and substituted flavone derivatives. This contrasts with the powdery farina, consisting almost entirely of flavone. The woolly farina in D. tapetodes is extruded through specific sites at the surface of the trichome's glandular head cell, characterised by a small complete gap in the plasma membrane, cell wall and cuticle and forming a tight seal between the fibre and hole. The data is consistent with formation and thread elongation occurring from within the cell.ConclusionsOur results suggest the composition of the D. tapetodes farina dictates its formation as wool rather than powder, consistent with a model of thread integrity relying on intermolecular H-bonding. Glandular trichomes produce multiple wool fibres by concentrating and maintaining their extrusion at specific sites at the cell cortex of the head cell. As the wool is extensive across the plant, there may be associated selection pressures attributed to living at high altitudes

The EcoChip : a wireless multi-sensor platform for comprehensive environmental monitoring

This paper presents the EcoChip, a new system based on state-of-the-art electro-chemical impedance (EIS) technologies allowing the growth of single strain organisms isolated from northern habitats. This portable system is a complete and autonomous wireless platform designed to monitor and cultivate microorganisms directly sampled from their natural environment, particularly from harsh northern environments. Using 96-well plates, the EcoChip can be used in the field for realtime monitoring of bacterial growth. Manufactured with highquality electronic components, this new EIS monitoring system is designed to function at a low excitation voltage signal to avoid damaging the cultured cells. The high-precision calibration network leads to high-precision results, even in the most limiting contexts. Luminosity, humidity and temperature can also be monitored with the addition of appropriate sensors. Access to robust data storage systems and power supplies is an obvious limitation for northern research. That is why the EcoChip is equipped with a flash memory that can store data over long periods of time. To resolve the power issue, a low-power microcontroller and a power management unit control and supply all electronic building blocks. Data stored in the EcoChip’s flash memory can be transmitted through a transceiver whenever a receiver is located within the functional transmission range. In this paper, we present the measured performance of the system, along with results from laboratory tests in-vitro and from two field tests. The EcoChip has been utilized to collect bio-environemental data in the field from the northern soils and ecosystems of Kuujjuarapik and Puvirnituq, during two expeditions, in 2017 and 2018, respectively. We show that the EcoChip can effectively carry out EIS analyses over an excitation frequency ranging from 750 Hz to 10 kHz with an accuracy of 2.35%. The overall power consumption of the system was 140.4 mW in normal operating mode and 81 µW in sleep mode. The proper development of the isolated bacteria was confirmed through DNA sequencing, indicating that bacteria thrive in the EcoChip’s culture wells while the growing conditions are successfully gathered and stored

Projet ATI : Halle des matériaux

Le Projet halle des matériaux est un projet qui a été créé cette année spécialement pour mettre en place une procédure qualité au sein de celle-ci dans le but in fine de mettre aux normes la machine de Traction MTS 10/M ainsi que la machine de Dureté REICHERTER 250 UV. La mise aux normes attendue par les encadrants est, en fait, la création d'un dossier qualité regroupement les documents nécessaires à l'obtention de l'accréditation. Dans le cas de la Halle des Matériaux, nous pouvions viser deux niveaux d'accréditations plus ou moins exigeants. En effet, l'accréditation délivrée par un laboratoire agréé est régis par des Normes d’exigence qui établissent la qualité à respecter. A l'inverse, une norme technique définit les critères à respecter dans le cadre d'une manipulation par exemple. Ainsi, les 2 Normes d'exigences auxquelles nous étions confrontés étaient la ISO 9001 et la ISO 17025, cette dernière étant certifiée COFRAC (COmité FRançais d'ACcréditations) elle est beaucoup plus contraignante. Nous avions commencé par viser l’accréditation selon la norme ISO 17025, cependant nous nous sommes rendu compte que les élèves de l’école ne pourraient plus manipuler en TP et donc nous nous sommes redirigés vers la norme ISO 9001. Nous avons fait le choix de scinder le groupe en deux pour se consacrer d'un côté sur la machine de traction et de l'autre sur la machine de dureté. Après avoir analysé les normes, nous nous sommes intéressés à l’état des machines. Nous avons ainsi, au cours de ce projet, créé la fiche de vie de chaque machine qui recense toutes les interventions qu'ont subi ces dernières. Nous avons effectué un périmètre sur les machines ainsi que sur de tous les appareils servants lors des manipulations (ex : extensomètres, pied à coulisse). Le périmètre est un document qui décrit avec précision tout ce que l'objet peut faire, dans quelles conditions et quelles sont ses limites. Nous avons également mis en place les procédures de manipulations à respecter lors des essais réalisés dans le cadre d'une utilisation normalisée pour chaque machine. S'en est suivi les rapports d'essais. Au niveau de la machine de traction, la Halle des Matériaux possède un extensomètre vidéo que nous avons cherché à intégrer dans nos travaux. Nous avons donc dû ajouter les informations concernant cette méthode d’acquisition de résultat dans la procédure de manipulation. Concernant la machine de dureté, une étude a montré qu'il était indispensable de changer les pénétrateurs pour l'obtention d'une accréditation. Des devis ont ainsi été demandés auprès de différents établissements pour l’achat de nouveaux pénétrateurs de même que pour l'obtention de certificats d'étalonnage. A ce jour, nous sommes en possession de devis pour l’étalonnage de chaque machine, l’achat d’un pénétrateur et d’une calle étalon HV5 pour la machine de dureté et d’un capteur de force 5kN pour la machine de traction. Les décisions prises par rapport à ces devis se trouvent dans le compte-rendu de la réunion du 18.04.2014. Les procédures terminées, nous avons pu les tester pour les rendre les plus compréhensibles possibles. Il reste bien évidement des documents à intégrer dans notre dossier qualité tel que les calculs d'incertitudes sur les résultats proposés après un test, ainsi que tous les documents administratifs. Ce qui fait frein aujourd'hui à toute progression du dossier est l'obtention des certificats d'étalonnages sur chaque machine qui certifierait la qualité et le bon fonctionnement de celles-ci.Outgoin

Existence of global strong solutions to a beam-fluid interaction system

We study an unsteady non linear fluid-structure interaction problem which is a simplified model to describe blood flow through viscoleastic arteries. We consider a Newtonian incompressible two-dimensional flow described by the Navier-Stokes equations set in an unknown domain depending on the displacement of a structure, which itself satisfies a linear viscoelastic beam equation. The fluid and the structure are fully coupled via interface conditions prescribing the continuity of the velocities at the fluid-structure interface and the action-reaction principle. We prove that strong solutions to this problem are global-in-time. We obtain in particular that contact between the viscoleastic wall and the bottom of the fluid cavity does not occur in finite time. To our knowledge, this is the first occurrence of a no-contact result, but also of existence of strong solutions globally in time, in the frame of interactions between a viscous fluid and a deformable structure

EXA2PRO programming environment:Architecture and applications

The EXA2PRO programming environment will integrate a set of tools and methodologies that will allow to systematically address many exascale computing challenges, including performance, performance portability, programmability, abstraction and reusability, fault tolerance and technical debt. The EXA2PRO tool-chain will enable the efficient deployment of applications in exascale computing systems, by integrating high-level software abstractions that offer performance portability and efficient exploitation of exascale systems' heterogeneity, tools for efficient memory management, optimizations based on trade-offs between various metrics and fault-tolerance support. Hence, by addressing various aspects of productivity challenges, EXA2PRO is expected to have significant impact in the transition to exascale computing, as well as impact from the perspective of applications. The evaluation will be based on 4 applications from 4 different domains that will be deployed in JUELICH supercomputing center. The EXA2PRO will generate exploitable results in the form of a tool-chain that support diverse exascale heterogeneous supercomputing centers and concrete improvements in various exascale computing challenges