MHD simulations of the formation and propagation of protostellar jets to observational length scales

We present 2.5-D global, ideal MHD simulations of magnetically and rotationally driven protostellar jets from Keplerian accretion discs, wherein only the initial magnetic field strength at the inner radius of the disc, $B_{\rm i}$, is varied. Using the AMR-MHD code AZEUS, we self-consistently follow the jet evolution into the observational regime ($>10^3\,\mathrm{AU}$) with a spatial dynamic range of $\sim6.5\times10^5$. The simulations reveal a three-component outflow: 1) A hot, dense, super-fast and highly magnetised 'jet core'; 2) a cold, rarefied, trans-fast and highly magnetised 'sheath' surrounding the jet core and extending to a tangential discontinuity; and 3) a warm, dense, trans-slow and weakly magnetised shocked ambient medium entrained by the advancing bow shock. The simulations reveal power-law relationships between $B_{\rm i}$ and the jet advance speed, $v_{\rm jet}$, the average jet rotation speed, $\langle v_\varphi\rangle$, as well as fluxes of mass, momentum, and kinetic energy. Quantities that do not depend on $B_{\rm i}$ include the plasma-$\beta$ of the transported material which, in all cases, seems to asymptote to order unity. Jets are launched by a combination of the 'magnetic tower' and 'bead-on-a-wire' mechanisms, with the former accounting for most of the jet acceleration---even for strong fields---and continuing well beyond the fast magnetosonic point. At no time does the leading bow shock leave the domain and, as such, these simulations generate large-scale jets that reproduce many of the observed properties of protostellar jets including their characteristic speeds and transported fluxes.Comment: 26 pages, 16 figures. Accepted for publication in MNRA

Pebble dynamics and accretion onto rocky planets. II. Radiative models

We investigate the effects of radiative energy transfer on a series of nested-grid, high-resolution hydrodynamic simulations of gas and particle dynamics in the vicinity of an Earth-mass planetary embryo. We include heating due to the accretion of solids and the subsequent convective motions. Using a constant embryo surface temperature, we show that radiative energy transport results in a tendency to reduce the entropy in the primordial atmosphere, but this tendency is alleviated by an increase in the strength of convective energy transport, triggered by a correspondingly increased super-adiabatic temperature gradient. As a consequence, the amplitude of the convective motions increase by roughly an order of magnitude in the vicinity of the embryo. In the cases investigated here, where the optical depth towards the disk surface is larger than unity, the reduction of the temperature in the outer parts of the Hill sphere relative to cases without radiative energy transport is only $\sim$100K, while the mass density increase is on the order of a factor of two in the inner parts of the Hill sphere. Our results demonstrate that, unless unrealistically low dust opacities are assumed, radiative cooling in the context of primordial rocky planet atmospheres can only become important after the disk surface density has dropped significantly below minimum-mass-solar-nebula values.Comment: 5 pages, 4 figures, 2 appendices; MNRAS Letters, accepte

AZEuS: An Adaptive Zone Eulerian Scheme for Computational MHD

A new adaptive mesh refinement (AMR) version of the ZEUS-3D astrophysical magnetohydrodynamical (MHD) fluid code, AZEuS, is described. The AMR module in AZEuS has been completely adapted to the staggered mesh that characterises the ZEUS family of codes, on which scalar quantities are zone-centred and vector components are face-centred. In addition, for applications using static grids, it is necessary to use higher-order interpolations for prolongation to minimise the errors caused by waves crossing from a grid of one resolution to another. Finally, solutions to test problems in 1-, 2-, and 3-dimensions in both Cartesian and spherical coordinates are presented.Comment: 52 pages, 17 figures; Accepted for publication in ApJ

Deep Search For Molecular Oxygen in TW Hya

The dominant form of oxygen in cold molecular clouds is gas-phase carbon monoxide (CO) and ice-phase water (H$_2$O). Yet, in planet-forming disks around young stars, gas-phase CO and H$_2$O are less abundant relative to their ISM values, and no other major oxygen-carrying molecules have been detected. Some astrochemical models predict that gas-phase molecular oxygen (O$_2$) should be a major carrier of volatile oxygen in disks. We report a deep search for emission from the isotopologue $^{16}$O$^{18}$O ($N_J=2_1-0_1$ line at 233.946 GHz) in the nearby protoplanetary disk around TW Hya. We used imaging techniques and matched filtering to search for weak emission but do not detect $^{16}$O$^{18}$O. Based on our results, we calculate upper limits on the gas-phase O$_2$ abundance in TW Hya of $(6.4-70)\times10^{-7}$ relative to H, which is $2-3$ orders of magnitude below solar oxygen abundance. We conclude that gas-phase O$_2$ is not a major oxygen-carrier in TW Hya. Two other potential oxygen-carrying molecules, SO and SO$_2$, were covered in our observations, which we also do not detect. Additionally, we report a serendipitous detection of the C$^{15}$N $N_J = 2_{5/2}-1_{3/2}$ hyperfine transitions, $F = 3 - 2$ and $F = 2 - 1$, at 219.9 GHz, which we found via matched filtering and confirm through imaging.Comment: 10 pages, 6 figures, Accepted for publication in Ap

Evidence for the start of planet formation in a young circumstellar disk

The growth of dust grains in protoplanetary disks is a necessary first step towards planet formation. This growth has been inferred via observations of thermal dust emission towards mature protoplanetary systems (age >2 million years) with masses that are, on average, similar to Neptune3. In contrast, the majority of confirmed exoplanets are heavier than Neptune. Given that young protoplanetary disks are more massive than their mature counterparts, this suggests that planet formation starts early, but evidence for grain growth that is spatially and temporally coincident with a massive reservoir in young disks remains scarce. Here, we report observations on a lack of emission of carbon monoxide isotopologues within the inner ~15 au of a very young (age ~100,000 years) disk around the Solar-type protostar TMC1A. By using the absence of spatially resolved molecular line emission to infer the gas and dust content of the disk, we conclude that shielding by millimeter-size grains is responsible for the lack of emission. This suggests that grain growth and millimeter-size dust grains can be spatially and temporally coincident with a mass reservoir sufficient for giant planet formation. Hence, planet formation starts during the earliest, embedded phases in the life of young stars.Comment: Accepted for publication in Nature Astronomy, 3 figures, 3 extended figure

Episodic infall towards a compact disk in B335?

Previous observations of B335 have presented evidence of ongoing infall in various molecular lines, e.g., HCO$^+$, HCN, CO. There have been no confirmed observations of a rotationally supported disk on scales greater than ~12~au. The presence of an outflow in B335 suggests that also a disk should be present or in formation. To constrain the earliest stages of protostellar evolution and disk formation, we aim to map the region where gas falls inwards and observationally constrain its kinematics. Furthermore, we aim to put strong limits on the size and orientation of any disk-like structure in B335. We use high angular resolution $^{13}$CO data from ALMA, and combine it with shorter-baseline archival data to produce a high-fidelity image of the infall in B335. We also revisit the imaging of high-angular resolution Band 6 continuum data to study the dust distribution in the immediate vicinity of B335. Continuum emission shows an elliptical structure (10 by 7 au) with a position angle 5 degrees east of north, consistent with the expectation for a forming disk in B335. A map of the infall velocity (as estimated from the $^{13}$CO emission), shows evidence of asymmetric infall, predominantly from the north and south. Close to the protostar, infall velocities appear to exceed free-fall velocities. 3D radiative transfer models, where the infall velocity is allowed to vary within the infall region, can explain the observed kinematics. The data suggests that a disk has started to form in B335 and that gas is falling towards that disk. However, kinematically-resolved line data towards the disk itself is needed to confirm the presence of a rotationally supported disk around this young protostar. The measured high infall velocities are not easily reconcilable with a magnetic braking scenario and suggest that there is a pressure gradient that allows the infall velocity to vary in the region.Comment: 14 pages, 11 figure

A big-data approach to understanding metabolic rate and response to obesity in laboratory mice [preprint]

Maintaining a healthy body weight requires an exquisite balance between energy intake and energy expenditure. In humans and in laboratory mice these factors are experimentally measured by powerful and sensitive indirect calorimetry devices. To understand the genetic and environmental factors that contribute to the regulation of body weight, an important first step is to establish the normal range of metabolic values and primary sources contributing to variability in results. Here we examine indirect calorimetry results from two experimental mouse projects, the Mouse Metabolic Phenotyping Centers and International Mouse Phenotyping Consortium to develop insights into large-scale trends in mammalian metabolism. Analysis of nearly 10,000 wildtype mice revealed that the largest experimental variances are consequences of institutional site. This institutional effect on variation eclipsed those of housing temperature, body mass, locomotor activity, sex, or season. We do not find support for the claim that female mice have greater metabolic variation than male mice. An analysis of these factors shows a normal distribution for energy expenditure in the phenotypic analysis of 2,246 knockout strains and establishes a reference for the magnitude of metabolic changes. Using this framework, we examine knockout strains with known metabolic phenotypes. We compare these effects with common environmental challenges including age, and exercise. We further examine the distribution of metabolic phenotypes exhibited by knockout strains of genes corresponding to GWAS obesity susceptibility loci. Based on these findings, we provide suggestions for how best to design and conduct energy balance experiments in rodents, as well as how to analyze and report data from these studies. These recommendations will move us closer to the goal of a centralized physiological repository to foster transparency, rigor and reproducibility in metabolic physiology experimentation

A divergent heritage for complex organics in Isheyevo lithic clasts

Primitive meteorites are samples of asteroidal bodies that contain a high proportion of chemically complex organic matter (COM) including prebiotic molecules such as amino acids, which are thought to have been delivered to Earth via impacts during the early history of the Solar System. Thus, understanding the origin of COM, including their formation pathway(s) and environment(s), is critical to elucidate the origin of life on Earth as well as assessing the potential habitability of exoplanetary systems. The Isheyevo CH/CBb carbonaceous chondrite contains chondritic lithic clasts with variable enrichments in 15N believed to be of outer Solar System origin. Using transmission electron microscopy (TEM-EELS) and in situ isotope analyses (SIMS and NanoSIMS), we report on the structure of the organic matter as well as the bulk H and N isotope composition of Isheyevo lithic clasts. These data are complemented by electron microprobe analyses of the clast mineral chemistry and bulk Mg and Cr isotopes obtained by inductively coupled plasma and thermal ionization mass spectrometry, respectively (MC-ICPMS and TIMS). Weakly hydrated (A) clasts largely consist of Mg-rich anhydrous silicates with local hydrated veins composed of phyllosilicates, magnetite and globular and diffuse organic matter. Extensively hydrated clasts (H) are thoroughly hydrated and contain Fe-sulfides, sometimes clustered with organic matter, as well as magnetite and carbonates embedded in a phyllosilicate matrix. The A-clasts are characterized by a more 15N-rich bulk nitrogen isotope composition (δ15N = 200–650‰) relative to H-clasts (δ15N = 50–180‰) and contain extremely 15N-rich domains with δ15N 15N-rich domains show that the lithic clast diffuse organic matter is typically more 15N-rich than globular organic matter. The correlated δ15N values and C/N ratios of nanoglobules require the existence of multiple organic components, in agreement with the H isotope data. The combined H and N isotope data suggest that the organic precursors of the lithic clasts are defined by an extremely 15N-poor (similar to solar) and D-rich component for H-clasts, and a moderately 15N-rich and D-rich component for A-clasts. In contrast, the composition of the putative fluids is inferred to include D-poor but moderately to extremely 15N-rich H- and N-bearing components. The variable 15N enrichments in H- and A-clasts are associated with structural differences in the N bonding environments of their diffuse organic matter, which are dominated by amine groups in H-clasts and nitrile functional groups in A-clasts. We suggest that the isotopically divergent organic precursors in Isheyevo clasts may be similar to organic moieties in carbonaceous chondrites (CI, CM, CR) and thermally recalcitrant organic compounds in ordinary chondrites, respectively. The altering fluids, which are inferred to cause the 15N enrichments observed in the clasts, may be the result of accretion of variable abundances of NH3 and HCN ices. Finally, using bulk Mg and Cr isotope composition of clasts, we speculate on the accretion regions of the various primitive chondrites and components and the origin of the Solar System’s N and H isotope variability

Complex I-Associated Hydrogen Peroxide Production Is Decreased and Electron Transport Chain Enzyme Activities Are Altered in n-3 Enriched fat-1 Mice

The polyunsaturated nature of n-3 fatty acids makes them prone to oxidative damage. However, it is not clear if n-3 fatty acids are simply a passive site for oxidative attack or if they also modulate mitochondrial reactive oxygen species (ROS) production. The present study used fat-1 transgenic mice, that are capable of synthesizing n-3 fatty acids, to investigate the influence of increases in n-3 fatty acids and resultant decreases in the n-6∶n-3 ratio on liver mitochondrial H2O2 production and electron transport chain (ETC) activity. There was an increase in n-3 fatty acids and a decrease in the n-6∶n-3 ratio in liver mitochondria from the fat-1 compared to control mice. This change was largely due to alterations in the fatty acid composition of phosphatidylcholine and phosphatidylethanolamine, with only a small percentage of fatty acids in cardiolipin being altered in the fat-1 animals. The lipid changes in the fat-1 mice were associated with a decrease (p<0.05) in the activity of ETC complex I and increases (p<0.05) in the activities of complexes III and IV. Mitochondrial H2O2 production with either succinate or succinate/glutamate/malate substrates was also decreased (p<0.05) in the fat-1 mice. This change in H2O2 production was due to a decrease in ROS production from ETC complex I in the fat-1 animals. These results indicate that the fatty acid changes in fat-1 liver mitochondria may at least partially oppose oxidative stress by limiting ROS production from ETC complex I