Evidence of unidirectional gene flow in a fragmented population of Salmo trutta L

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Pyrene–nucleobase conjugates: synthesis, oligonucleotide binding and confocal bioimaging studies

Fluorescent pyrene–linker–nucleobase (nucleobase = thymine, adenine) conjugates with carbonyl and hydroxy functionalities in the linker were synthesized and characterized. X-ray single-crystal structure analysis performed for the pyrene–C(O)CH2CH2–thymine (2) conjugate reveals dimers of molecules 2 stabilized by hydrogen bonds between the thymine moieties. The photochemical characterization showed structure-dependent fluorescence properties of the investigated compounds. The conjugates bearing a carbonyl function represent weak emitters as compared to compounds with a hydroxy function in the linker. The self-assembly properties of pyrene nucleobases were investigated in respect to their binding to single and double strand oligonucleotides in water and in buffer solution. In respect to the complementary oligothymidine T10 template in water, compounds 3 and 5 both show a self-assembling behavior according to canonical base–base pairing. However, in buffer solution, derivative 5 was much more effective than 3 in binding to the T10 template. Furthermore the adenine derivative 5 binds to the double-stranded (dA)10–T10 template with a self-assembly ratio of 112%. Such a high value of a self-assembly ratio can be rationalized by a triple-helix-like binding, intercalation, or a mixture of both. Remarkably, compound 5 also shows dual staining pattern in living HeLa cells. Confocal microscopy confirmed that 5 predominantly stains mitochondria but it also accumulates in the nucleoli of the cells

SNP genotyping reveals substructuring in weakly differentiated populations of Atlantic cod (Gadus morhua) from diverse environments in the Baltic Sea

Atlantic cod (Gadus morhua) is one of the most important fish species in northern Europe for several reasons including its predator status in marine ecosystems, its historical role in fisheries, its potential in aquaculture and its strong public profile. However, due to over-exploitation in the North Atlantic and changes in the ecosystem, many cod populations have been reduced in size and genetic diversity. Cod populations in the Baltic Proper, Kattegat and North Sea have been analyzed using a species specific single nucleotide polymorphism (SNP) array. Using a subset of 8,706 SNPs, moderate genetic differences were found between subdivisions in three traditionally delineated cod management stocks: Kattegat, western and eastern Baltic. However, an FST measure of population differentiation based on allele frequencies from 588 outlier loci for 2 population groups, one including 5 western and the other 4 eastern Baltic populations, indicated high genetic differentiation. In this paper, differentiation has been demonstrated not only between, but also within western and eastern Baltic cod stocks for the first time, with salinity appearing to be the most important environmental factor influencing the maintenance of cod population divergence between the western and eastern Baltic Sea

Mitochondria Targeting with Luminescent Rhenium(I) Complexes

Two new neutral fac-[Re(CO)3(phen)L] compounds (1,2), with phen = 1,10-phenanthroline and L = O2C(CH2)5CH3 or O2C(CH2)4C≡CH, were synthetized in one-pot procedures from fac-[Re(CO)3(phen)Cl] and the corresponding carboxylic acids, and were fully characterized by IR and UV-Vis absorption spectroscopy, 1H- and 13C-NMR, mass spectrometry and X-ray crystallography. The compounds, which display orange luminescence, were used as probes for living cancer HeLa cell staining. Confocal microscopy revealed accumulation of both dyes in mitochondria. To investigate the mechanism of mitochondrial staining, a new non-emissive compound, fac-[Re(CO)3(phen)L], with L = O2C(CH2)3((C5H5)Fe(C5H4), i.e., containing a ferrocenyl moiety, was synthetized and characterized (3). 3 shows the same mitochondrial accumulation pattern as 1 and 2. Emission of 3 can only be possible when ferrocene-containing ligand dissociates from the metal center to produce a species containing the luminescent fac­[Re(CO)3(phen)]+ core. The release of ligands from the Re center was verified in vitro through the conjugation with model proteins. These findings suggest that the mitochondria accumulation of compounds 1–3 is due to the formation of luminescent fac-[Re(CO)3(phen)]+ products, which react with cellular matrix molecules giving secondary products and are uptaken into the negatively charged mitochondrial membranes. Thus, reported compounds feature a rare dissociation-driven mechanism of action with great potential for biological applications.The X-ray single-crystal diffraction studies were carried out at the Biological and Chemical Research Centre, University of Warsaw, established within the project co-financed by European Union from the European Regional Development Fund under the Operational Programme ‘Innovative Economy’, 2007–2013. This study was also supported by the National Science Centre Poland MAESTRO grant-DEC-2012/04/A/ST5/00609 (D.T. and K.W.), which enabled the X-ray structural analysis to be performed. RC thanks the European Research Council (ERC) for support in the framework of the MSCA RISE Project no. 645628

6K_brown trout_Genotyping_results.txt

Analysis performed on 160 sea trout <i>Salmo trutta</i> L., samples orginated from southern Baltic area

Three crayfish species of different origin in a medium-sized river system: a new state of affairs

In view of contemporary changes in aquatic environments, determining the distribution of both native and emerging invasive crayfish species is increasingly important. In central Europe, the three invasive crayfish species of the signal crayfish Pacifastacus leniusculus (Dana, 1852), the spiny-cheek crayfish Faxonius limosus (Rafinesque, 1817) and the red swamp crayfish Procambarus clarki (Girard, 1852) are of North American origin. The spiny-cheek crayfish was first brought to the southern Baltic basin at the end of nineteenth century, and its expansion ensued rapidly. At the same time, the indigenous species of the noble crayfish Astacus astacus (Linnaeus, 1758) began to disappear. The spread of the signal crayfish started in the second half of twentieth century; however, it has progressed strongly in recent years. Latest studies of fish fauna in the Drwęca River system, a tributary of the lower Vistula River, have simultaneously revealed new information on the occurrence of crayfish. The most widespread was spiny-cheek crayfish found at ten sites throughout the river basin. The second alien species, the signal crayfish, was noted in four locations in the upper part of the river system, but no mixed populations were noted. A particularly valuable result of the study was the discovery of an unknown site of noble crayfish in a small stream

Recent genetic changes in enhanced populations of sea trout (

The genetic structure of a fish population is usually thought to be stable over time. In the southern Baltic, Salmo trutta m. trutta (sea trout) populations have been characterized by low degree of genetic differentiation. All studied populations had been heavily stocked with mixed material for many years prior to the sampling period, including releases of Pomeranian sea trout to the Vistula River in Poland, Southern Baltic. However, the strategy of stocking became river based a few years before the sampling began. Juveniles from artificial reproduction are released only to their parental river, which reduces the mixing of the gene pool of fish from different populations. Changes in sea trout populations in the southern Baltic over time were studied using single nucleotide polymorphisms (SNPs). Genetic composition of populations of sea trout in the Vistula and Drwȩca river system were found to increasingly resemble the non-admixed hatchery population from Aquamar (Miastko, Poland), whereas the Pomeranian populations were stable. The implementation of a new stocking strategy for the restoration and protection of Vistula sea trout was noted as possible explanation. With the increase of natural breeding, artificial enhancement of sea trout populations should be reduced