Arbuscular Mycorrhizal Fungi and Plant Chemical Defence : Effects of Colonisation on Aboveground and Belowground Metabolomes

Arbuscular mycorrhizal fungal (AMF) colonisation of plant roots is one of the most ancient and widespread interactions in ecology, yet the systemic consequences for plant secondary chemistry remain unclear. We performed the first metabolomic investigation into the impact of AMF colonisation by Rhizophagus irregularis on the chemical defences, spanning above- and below-ground tissues, in its host-plant ragwort (Senecio jacobaea). We used a non-targeted metabolomics approach to profile, and where possible identify, compounds induced by AMF colonisation in both roots and shoots. Metabolomics analyses revealed that 33 compounds were significantly increased in the root tissue of AMF colonised plants, including seven blumenols, plant-derived compounds known to be associated with AMF colonisation. One of these was a novel structure conjugated with a malonyl-sugar and uronic acid moiety, hitherto an unreported combination. Such structural modifications of blumenols could be significant for their previously reported functional roles associated with the establishment and maintenance of AM colonisation. Pyrrolizidine alkaloids (PAs), key anti-herbivore defence compounds in ragwort, dominated the metabolomic profiles of root and shoot extracts. Analyses of the metabolomic profiles revealed an increase in four PAs in roots (but not shoots) of AMF colonised plants, with the potential to protect colonised plants from below-ground organisms

Is there a common water-activity limit for the three domains of life?

Archaea and Bacteria constitute a majority of life systems on Earth but have long been considered inferior to Eukarya in terms of solute tolerance. Whereas the most halophilic prokaryotes are known for an ability to multiply at saturated NaCl (water activity (a w) 0.755) some xerophilic fungi can germinate, usually at high-sugar concentrations, at values as low as 0.650-0.605 a w. Here, we present evidence that halophilic prokayotes can grow down to water activities of <0.755 for Halanaerobium lacusrosei (0.748), Halobacterium strain 004.1 (0.728), Halobacterium sp. NRC-1 and Halococcus morrhuae (0.717), Haloquadratum walsbyi (0.709), Halococcus salifodinae (0.693), Halobacterium noricense (0.687), Natrinema pallidum (0.681) and haloarchaeal strains GN-2 and GN-5 (0.635 a w). Furthermore, extrapolation of growth curves (prone to giving conservative estimates) indicated theoretical minima down to 0.611 a w for extreme, obligately halophilic Archaea and Bacteria. These were compared with minima for the most solute-tolerant Bacteria in high-sugar (or other non-saline) media (Mycobacterium spp., Tetragenococcus halophilus, Saccharibacter floricola, Staphylococcus aureus and so on) and eukaryotic microbes in saline (Wallemia spp., Basipetospora halophila, Dunaliella spp. and so on) and high-sugar substrates (for example, Xeromyces bisporus, Zygosaccharomyces rouxii, Aspergillus and Eurotium spp.). We also manipulated the balance of chaotropic and kosmotropic stressors for the extreme, xerophilic fungi Aspergillus penicilloides and X. bisporus and, via this approach, their established water-activity limits for mycelial growth (∼0.65) were reduced to 0.640. Furthermore, extrapolations indicated theoretical limits of 0.632 and 0.636 a w for A. penicilloides and X. bisporus, respectively. Collectively, these findings suggest that there is a common water-activity limit that is determined by physicochemical constraints for the three domains of life

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

The importance of microbial communities (MCs) cannot be overstated. MCs underpin the biogeochemical cycles of the earth's soil, oceans and the atmosphere, and perform ecosystem functions that impact plants, animals and humans. Yet our ability to predict and manage the function of these highly complex, dynamically changing communities is limited. Building predictive models that link MC composition to function is a key emerging challenge in microbial ecology. Here, we argue that addressing this challenge requires close coordination of experimental data collection and method development with mathematical model building. We discuss specific examples where model-experiment integration has already resulted in important insights into MC function and structure. We also highlight key research questions that still demand better integration of experiments and models. We argue that such integration is needed to achieve significant progress in our understanding of MC dynamics and function, and we make specific practical suggestions as to how this could be achieved

Bacterial communities differ between plant species and soil type, and differentially influence seedling establishment on serpentine soils

Background and aim: Root-associated microbial communities influence plant phenotype, growth and local abundance, yet the factors that structure these microbial communities are still poorly understood. California landscapes contain serpentine soils, which are nutrient-poor and high in heavy metals, and distinct from neighboring soils making them ideal for studying the factors that structure root microbiomes and their functions. Method: Here, we surveyed the rhizoplane of serpentine-indifferent plants, which grow on and off serpentine soil, to determine the relative influence of plant identity and soil chemistry on rhizoplane microbial community structure using 16S rRNA metabarcoding. Additionally, we experimentally examined if serpentine vs. non-serpentine microorganisms differentially affected plant growth in serpentine soil. Results: Rhizoplane bacterial communities differed among plant species, soil types, and the interaction between them in both the field and experimental soils. In the experiment, soil microbial community source influenced seedling survival, but plant growth phenotypes were largely invariant to microbial community with a few exceptions. Conclusions: Rhizosplane bacterial species composition differed between plant species and soil types, and Amplicon Sequence Variants (ASVs) from the phyla Acidobacteria and Proteobacteria (Genus: Microvirga) were characteristic of serpentine soils. While soil microbial community composition influenced seedling survival in the current study, further study is required to disentangle the role of microbial associations and plant tolerance to serpentine

Legitimate visitors and nectar robbers of Aquilegia formosa have different effects on nectar bacterial communities

Metacommunity structure is strongly influenced by dispersal between habitat patches. Dispersal mode (e.g., active or passively via vector, wind, or water) is recognized to influence metacommunity dynamics, but it is not well understood how within-mode heterogeneity impacts dispersal and community assembly, particularly for microbial communities. Microbes often rely on flower visitors for dispersal among short-lived floral nectar habitats, but it is unclear whether flower visitor guilds (e.g., legitimate visitors vs. larcenists) differentially influence nectar microbial diversity and community structure. We surveyed the community of legitimate nectar foragers and nectar robbers, which damage flowers to obtain floral rewards, of Aquilegia formosa. Then, we evaluated how manipulating access by legitimate nectar foragers, primary nectar robbers, and/or secondary nectar robbers influenced the diversity, species composition, and beta diversity of nectar bacteria within individual flowers. A taxonomically diverse insect community visited A.&nbsp;formosa, and visitors differentially influenced nectar bacterial community structure at within-flower (local) and among-flower (regional) scales. When legitimate nectar foragers were allowed to access A.&nbsp;formosa, we observed an increase in bacterial diversity and changes in bacterial species composition such that common nectar bacteria had higher relative abundances. In contrast, effects of natural and simulated robbing had little effect on bacterial alpha diversity, but simulated robbing decreased the relative abundance of common nectar bacteria, and natural nectar robbing events reduced beta diversity of nectar bacteria. This work highlights the importance of visitor identity on microbial diversity and species composition in flowers, and, more broadly, suggests that vectors can differentially influence metacommunity structure

Arbuscular nnycorrhizal fungi alter above- and below-ground chemical defense expression differentially among Asclepias species

Below-ground (BG) symbionts of plants can have substantial influence on plant growth and nutrition. Recent work demonstrates that mycorrhizal fungi can affect plant resistance to herbivory and the performance of above- (AG) and BG herbivores. Although these examples emerge from diverse systems, it is unclear if plant species that express similar defensive traits respond similarly to fungal colonization, but comparative work may inform this question. To examine the effects of arbuscular mycorrhizal fungi (AMF) on the expression of chemical resistance, we inoculated 8 species of Asclepias (milkweed)—which all produce toxic cardenolides—with a community of AMF. We quantified plant biomass, foliar and root cardenolide concentration and composition, and assessed evidence for a growth-defense tradeoff in the presence and absence of AMF. As expected, total foliar and root cardenolide concentration varied among milkweed species. Importantly, the effect of mycorrhizal fungi on total foliar cardenolide concentration also varied among milkweed species, with foliar cardenolides increasing or decreasing, depending on the plant species. We detected a phylogenetic signal to this variation; AMF fungi reduced foliar cardenolide concentrations to a greater extent in the clade including A. curassavica than in the clade including A. syriaca. Moreover, AMF inoculation shifted the composition of cardenolides in AG and BG plant tissues in a species-specific fashion. Mycorrhizal inoculation changed the relative distribution of cardenolides between root and shoot tissue in a species-specific fashion, but did not affect cardenolide diversity or polarity. Finally, a tradeoff between plant growth and defense in non-mycorrhizal plants was mitigated completely by AMF inoculation. Overall, we conclude that the effects of AMF inoculation on the expression of chemical resistance can vary among congeneric plant species, and ameliorate tradeoffs between growth and defense

The presence of aggressive ants is associated with fewer insect visits to and altered microbe communities in coffee flowers

The process of dispersal can shape ecological communities, but its influence is thought to be small compared to the effects of environmental variation or direct species interactions, particularly for microbial communities. Ants can influence movement patterns of insects and the microbes they vector, potentially affecting microbial establishment on plants, including in agroecosystems. Here, we examine how the presence of aggressive ants, which can influence floral visitation by bees and other pollinators, shapes the community composition of bacteria and fungi on coffee flowers in farms that differ in shade management intensity. We hypothesized that the presence of aggressive ants should reduce the frequency and diversity of floral visitors. Finally, we predicted that the effects of ants should be stronger in the low-shade farm, which has a less diverse community of floral visitors. We sampled microbial communities from nectar and pistils of coffee flowers near and far from nests of the aggressive ant Azteca sericeasur across two farms that vary in shade management and diversity of floral visitors. Bacterial and fungal community composition was characterized using Illumina sequencing of the 16S and ITS regions of the rRNA gene. Consistent with our expectation, Azteca presence was associated with a decrease in the number and diversity of visitors, visit duration and number of flowers visited. Azteca presence influenced microbial communities, but effects differed between farms. Azteca nests were associated with higher bacterial diversity in both farms, but the difference between flowers on trees with and without Azteca was greater in the high-shade farm. Azteca nests were associated with higher fungal diversity in the high-shade farm, but not the low-shade farm. In addition, the presence of ants was strongly associated with species composition of fungi and bacteria in flowers, but differentiation between ant and no-ant communities was greater in the low-shade farm. Specific operational taxonomic units (OTUs) were differentially associated with the presence of ants. We conclude that indirect interactions that influence dispersal may have large effects on microbial community composition, particularly in ephemeral microbial communities