441 research outputs found
From Network Structure to Dynamics and Back Again: Relating dynamical stability and connection topology in biological complex systems
The recent discovery of universal principles underlying many complex networks
occurring across a wide range of length scales in the biological world has
spurred physicists in trying to understand such features using techniques from
statistical physics and non-linear dynamics. In this paper, we look at a few
examples of biological networks to see how similar questions can come up in
very different contexts. We review some of our recent work that looks at how
network structure (e.g., its connection topology) can dictate the nature of its
dynamics, and conversely, how dynamical considerations constrain the network
structure. We also see how networks occurring in nature can evolve to modular
configurations as a result of simultaneously trying to satisfy multiple
structural and dynamical constraints. The resulting optimal networks possess
hubs and have heterogeneous degree distribution similar to those seen in
biological systems.Comment: 15 pages, 6 figures, to appear in Proceedings of "Dynamics On and Of
Complex Networks", ECSS'07 Satellite Workshop, Dresden, Oct 1-5, 200
-dimensions Dirac fermions BEC-BCS cross-over thermodynamics
An effective Proca Lagrangian action is used to address the vector
condensation Lorentz violation effects on the equation of state of the strongly
interacting fermions system. The interior quantum fluctuation effects are
incorporated as an external field approximation indirectly through a fictive
generalized Thomson Problem counterterm background. The general analytical
formulas for the -dimensions thermodynamics are given near the unitary limit
region. In the non-relativistic limit for , the universal dimensionless
coefficient and energy gap are
reasonably consistent with the existed theoretical and experimental results. In
the unitary limit for and T=0, the universal coefficient can even
approach the extreme occasion corresponding to the infinite effective
fermion mass which can be mapped to the strongly coupled
two-dimensions electrons and is quite similar to the three-dimensions
Bose-Einstein Condensation of ideal boson gas. Instead, for , the
universal coefficient is negative, implying the non-existence of phase
transition from superfluidity to normal state. The solutions manifest the
quantum Ising universal class characteristic of the strongly coupled unitary
fermions gas.Comment: Improved versio
Boson gas in a periodic array of tubes
We report the thermodynamic properties of an ideal boson gas confined in an
infinite periodic array of channels modeled by two, mutually perpendicular,
Kronig-Penney delta-potentials. The particle's motion is hindered in the x-y
directions, allowing tunneling of particles through the walls, while no
confinement along the z direction is considered. It is shown that there exists
a finite Bose- Einstein condensation (BEC) critical temperature Tc that
decreases monotonically from the 3D ideal boson gas (IBG) value as the
strength of confinement is increased while keeping the channel's cross
section, constant. In contrast, Tc is a non-monotonic function of
the cross-section area for fixed . In addition to the BEC cusp, the
specific heat exhibits a set of maxima and minima. The minimum located at the
highest temperature is a clear signal of the confinement effect which occurs
when the boson wavelength is twice the cross-section side size. This
confinement is amplified when the wall strength is increased until a
dimensional crossover from 3D to 1D is produced. Some of these features in the
specific heat obtained from this simple model can be related, qualitatively, to
at least two different experimental situations: He adsorbed within the
interstitial channels of a bundle of carbon nanotubes and
superconductor-multistrand-wires NbSn.Comment: 9 pages, 10 figures, submitte
Search for W' bosons decaying to an electron and a neutrino with the D0 detector
This Letter describes the search for a new heavy charged gauge boson W'
decaying into an electron and a neutrino. The data were collected with the D0
detector at the Fermilab Tevatron proton-antiproton Collider at a
center-of-mass energy of 1.96 TeV, and correspond to an integrated luminosity
of about 1 inverse femtobarn. Lacking any significant excess in the data in
comparison with known processes, an upper limit is set on the production cross
section times branching fraction, and a W' boson with mass below 1.00 TeV can
be excluded at the 95% C.L., assuming standard-model-like couplings to
fermions. This result significantly improves upon previous limits, and is the
most stringent to date.Comment: submitted to Phys. Rev. Let
Search for a scalar or vector particle decaying into Zgamma in ppbar collisions at sqrt(s) = 1.96 TeV
We present a search for a narrow scalar or vector resonance decaying into
Zgamma with a subsequent Z decay into a pair of electrons or muons. The data
for this search were collected with the D0 detector at the Fermilab Tevatron
ppbar collider at a center of mass energy sqrt(s) = 1.96 TeV. Using 1.1 (1.0)
fb-1 of data, we observe 49 (50) candidate events in the electron (muon)
channel, in good agreement with the standard model prediction. From the
combination of both channels, we derive 95% C.L. upper limits on the cross
section times branching fraction (sigma x B) into Zgamma. These limits range
from 0.19 (0.20) pb for a scalar (vector) resonance mass of 600 GeV/c^2 to 2.5
(3.1) pb for a mass of 140 GeV/c^2.Comment: Published by Phys. Lett.
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types
Measurement of the p-pbar -> Wgamma + X cross section at sqrt(s) = 1.96 TeV and WWgamma anomalous coupling limits
The WWgamma triple gauge boson coupling parameters are studied using p-pbar
-> l nu gamma + X (l = e,mu) events at sqrt(s) = 1.96 TeV. The data were
collected with the DO detector from an integrated luminosity of 162 pb^{-1}
delivered by the Fermilab Tevatron Collider. The cross section times branching
fraction for p-pbar -> W(gamma) + X -> l nu gamma + X with E_T^{gamma} > 8 GeV
and Delta R_{l gamma} > 0.7 is 14.8 +/- 1.6 (stat) +/- 1.0 (syst) +/- 1.0 (lum)
pb. The one-dimensional 95% confidence level limits on anomalous couplings are
-0.88 < Delta kappa_{gamma} < 0.96 and -0.20 < lambda_{gamma} < 0.20.Comment: Submitted to Phys. Rev. D Rapid Communication
Measurement of the ttbar Production Cross Section in ppbar Collisions at sqrt{s} = 1.96 TeV using Kinematic Characteristics of Lepton + Jets Events
We present a measurement of the top quark pair ttbar production cross section
in ppbar collisions at a center-of-mass energy of 1.96 TeV using 230 pb**{-1}
of data collected by the DO detector at the Fermilab Tevatron Collider. We
select events with one charged lepton (electron or muon), large missing
transverse energy, and at least four jets, and extract the ttbar content of the
sample based on the kinematic characteristics of the events. For a top quark
mass of 175 GeV, we measure sigma(ttbar) = 6.7 {+1.4-1.3} (stat) {+1.6- 1.1}
(syst) +/-0.4 (lumi) pb, in good agreement with the standard model prediction.Comment: submitted to Phys.Rev.Let
Measurement of the ttbar Production Cross Section in ppbar Collisions at sqrt(s)=1.96 TeV using Lepton + Jets Events with Lifetime b-tagging
We present a measurement of the top quark pair () production cross
section () in collisions at TeV
using 230 pb of data collected by the D0 experiment at the Fermilab
Tevatron Collider. We select events with one charged lepton (electron or muon),
missing transverse energy, and jets in the final state. We employ
lifetime-based b-jet identification techniques to further enhance the
purity of the selected sample. For a top quark mass of 175 GeV, we
measure pb, in
agreement with the standard model expectation.Comment: 7 pages, 2 figures, 3 tables Submitted to Phys.Rev.Let
Measurement of the ratios of the Z/G* + >= n jet production cross sections to the total inclusive Z/G* cross section in ppbar collisions at sqrt(s) = 1.96 TeV
We present a study of events with Z bosons and jets produced at the Fermilab
Tevatron Collider in ppbar collisions at a center of mass energy of 1.96 TeV.
The data sample consists of nearly 14,000 Z/G* -> e+e- candidates corresponding
to the integrated luminosity of 0.4 fb-1 collected using the D0 detector.
Ratios of the Z/G* + >= n jet cross sections to the total inclusive Z/G* cross
section have been measured for n = 1 to 4 jet events. Our measurements are
found to be in good agreement with a next-to-leading order QCD calculation and
with a tree-level QCD prediction with parton shower simulation and
hadronization.Comment: 7 pages, 2 figures, slightly modified, submitted to Phys. Lett.
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