Finite driving rate and anisotropy effects in landslide modeling

In order to characterize landslide frequency-size distributions and individuate hazard scenarios and their possible precursors, we investigate a cellular automaton where the effects of a finite driving rate and the anisotropy are taken into account. The model is able to reproduce observed features of landslide events, such as power-law distributions, as experimentally reported. We analyze the key role of the driving rate and show that, as it is increased, a crossover from power-law to non power-law behaviors occurs. Finally, a systematic investigation of the model on varying its anisotropy factors is performed and the full diagram of its dynamical behaviors is presented.Comment: 8 pages, 9 figure

Early pine root anatomy and primary and lateral root formation are affected by container size: implications in dry-summer climates

Although the presence of root anatomical structures of young Pinus ponderosa seedlings grown in containers of contrasting volume (164 vs. 7000 cm3) was similar, seedlings reared 60 days in the large container had more vascular cambium although the xylem thickness was similar. In addition, seedlings in large containers had nearly twice as many resin ducts within the vascular cambium as their cohorts in small containers. Taproot length closely matched container depth. Though lateral root emission rates were similar between container sizes, large container seedlings had more than 2X the number of lateral roots as those from small containers. These differences in morphophysiological characteristics may be important to seedling establishment on sites that experience dry summer conditions, or for seedlings destined to drier, harsher sites. Further work to elucidate the ramifications of these morphophysiological differences on seedling establishment is warranted

Asymmetrical copper root pruning may improve root traits for reforesting steep and/or windy sites

Our research demonstrates that plant material can be produced in the nursery with asymmetrical root systems, which may have utility for reforestation of difficult planting sites characterized by steep slopes and/or windy conditions. Such a root system can be generated using chemical root pruning by applying cupric carbonate (Cu) that can arrest the development of, or cause mortality to, root apical meristems resulting in the formation of new lateral roots with an overall increase in the biomass, length, and volume of the root system. Our objective was to investigate the effect of chemical root pruning on the morphological and architectural traits of adventitious roots produced by poplar cuttings (Populus nigra L.) grown in containers coated with Cu in various symmetrical (Side, Bottom, Side + Bottom) and asymmetrical (half side + half bottom) patterns. After six weeks, roots of the cuttings were extracted from different container depths (Top, Middle, and Bottom) and portions (non-coated, Cu-coated), and analyzed. The root systems reacted to all coating patterns by increasing length, biomass, volume, and average diameters, but magnitude of increase was further affected by depth. In particular, root growth was unaffected at the Top of the container, and length was the highest at the Bottom depth. The Middle depth had a significant increment in both biomass and volume. Also, the root population increased in diameter as a possible response to Cu exposure. Interestingly, in the asymmetrically coated containers this depth response in the non-coated portions was of higher magnitude than in the Cu-coated portions

Ongoing modifications to root system architecture of Pinus ponderosa growing on a sloped site revealed by tree-ring analysis

Abstract Our knowledge of the root system architecture of trees is still incomplete, especially concerning how biomass partitioning is regulated to achieve an optimal, but often unequal, distribution of resources. In addition, our comprehension of root system architecture development as a result of the adaptation process is limited because most studies lack a temporal approach. To add to our understanding, we excavated 32-year-old Pinus ponderosa trees from a steep, forested site in northern Idaho USA. The root systems were discretized by a low magnetic field digitizer and along with AMAPmod software we examined their root traits (i.e. order category, topology, growth direction length, and volume) in four quadrants: downslope, upslope, windward, and leeward. On one tree, we analyzed tree rings to compare the ages of lateral roots relative to their parental root, and to assess the occurrence of compression wood. We found that, from their onset, first-order lateral roots have similar patterns of ring eccentricity suggesting an innate ability to respond to different mechanical forces; more root system was allocated downslope and to the windward quadrant. In addition, we noted that shallow roots, which all presented compression wood, appear to be the most important component of anchorage. Finally, we observed that lateral roots can change growth direction in response to mechanical forces, as well as produce new lateral roots at any development stage and wherever along their axis. These findings suggest that trees adjust their root spatial deployment in response to environmental conditions, these roots form compression wood to dissipate mechanical forces, and new lateral roots can arise anywhere and at any time on the existing system in apparent response to mechanical forces

Sequence of the fourth and fifth Photosystem II Type I chlorophyll a/b -binding protein genes of Arabidopsis thaliana and evidence for the presence of a full complement of the extended CAB gene family

A second locus ( Lhb1B ) encoding Photosystem II Type I chlorophyll a/b -binding (CAB) polypeptides was identified in Arabidopsis thaliana . This locus carries two genes in an inverted orientation. The predicted sequences of the polypeptides encoded by these two genes show substantial divergence in their amino termini relative to each other and to the proteins encoded by the three Lhb1 CAB genes previously characterized [10], but little divergence within the predicted primary structure of the mature protein. DNA probes derived from seven additional types of tomato CAB genes, encoding chlorophyll a/b -binding polypeptides of several antenna systems of the photosynthetic apparatus, were tested against A. thaliana . Each of these hybridized in Southern blots to unique DNA fragment(s), demonstrating the existence of each of these different types of CAB genes in the genome of A. thaliana . The number of genes encoding each CAB type in A. thaliana was estimated to be similar to that of tomato.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/43432/1/11103_2004_Article_BF00027069.pd

Evaluation of iron overload in nigrosome 1 via quantitative susceptibility mapping as a progression biomarker in prodromal stages of synucleinopathies

Idiopathic rapid eye movement (REM) sleep behavior disorder (iRBD) is a prodromal stage of α-synucleinopathies, such as Parkinson's disease (PD), which are characterized by the loss of dopaminergic neurons in substantia nigra, associated with abnormal iron load. The assessment of presymptomatic biomarkers predicting the onset of neurodegenerative disorders is critical for monitoring early signs, screening patients for neuroprotective clinical trials and understanding the causal relationship between iron accumulation processes and disease development. Here, we used Quantitative Susceptibility Mapping (QSM) and 7T MRI to quantify iron deposition in Nigrosome 1 (N1) in early PD (ePD) patients, iRBD patients and healthy controls and investigated group differences and correlation with disease progression. We evaluated the radiological appearance of N1 and analyzed its iron content in 35 ePD, 30 iRBD patients and 14 healthy controls via T2*-weighted sequences and susceptibility (χ) maps. N1 regions of interest (ROIs) were manually drawn on control subjects and warped onto a study-specific template to obtain probabilistic N1 ROIs. For each subject the N1 with the highest mean χ was considered for statistical analysis. The appearance of N1 was rated pathological in 45% of iRBD patients. ePD patients showed increased N1 χ compared to iRBD patients and HC but no correlation with disease duration, indicating that iron load remains stable during the early stages of disease progression. Although no difference was reported in iron content between iRBD and HC, N1 χ in the iRBD group increases as the disease evolves. QSM can reveal temporal changes in N1 iron content and its quantification may represent a valuable presymptomatic biomarker to assess neurodegeneration in the prodromal stages of PD

Design and modelling of an engineered bacteria-based, pressure-sensitive soil.

In this paper, we describe the first steps in the design of a synthetic biological system based on the use of genetically modified bacteria to detect elevated pressures in soils and respond by cementing soil particles. Such a system might, for example, enable a self- constructed foundation to form in response to load using engineered bacteria which could be seeded and grown in the soils. This process would reduce the need for large-scale excavations and may be the basis for a new generation of self-assembling and responsive bio-based materials. A prototype computational model is presented which integrates experimental data from a pressure sensitive gene within Escherichia coli bacteria with geotechnical models of soil loading and pore water pressure. The results from the integrated model are visualised by mapping expected gene expression values onto the soil volume. We also use our experimental data to design a two component system where one type of bacteria acts as a sensor and signals to another material synthesis bacteria. The simulation demonstrates the potential of computational models which integrate multiple scales from macro stresses in soils to the expression of individual genes to inform new types of design process. The work also illustrates the combination of in silico (silicon based computing) computation with in vivo (in the living) computation

The performance of stochastic designs in wellbore drilling operations

© 2018, The Author(s). Wellbore drilling operations frequently entail the combination of a wide range of variables. This is underpinned by the numerous factors that must be considered in order to ensure safety and productivity. The heterogeneity and sometimes unpredictable behaviour of underground systems increases the sensitivity of drilling activities. Quite often the operating parameters are set to certify effective and efficient working processes. However, failings in the management of drilling and operating conditions sometimes result in catastrophes such as well collapse or fluid loss. This study investigates the hypothesis that optimising drilling parameters, for instance mud pressure, is crucial if the margin of safe operating conditions is to be properly defined. This was conducted via two main stages: first a deterministic analysis—where the operating conditions are predicted by conventional modelling procedures—and then a probabilistic analysis via stochastic simulations—where a window of optimised operation conditions can be obtained. The outcome of additional stochastic analyses can be used to improve results derived from deterministic models. The incorporation of stochastic techniques in the evaluation of wellbore instability indicates that margins of the safe mud weight window are adjustable and can be extended considerably beyond the limits of deterministic predictions. The safe mud window is influenced and hence can also be amended based on the degree of uncertainty and the permissible level of confidence. The refinement of results from deterministic analyses by additional stochastic simulations is vital if a more accurate and reliable representation of safe in situ and operating conditions is to be obtained during wellbore operations.Published versio

Clinical characteristics of a large cohort of patients with narcolepsy candidate for pitolisant: a cross-sectional study from the Italian PASS Wakix® Cohort

Introduction: Narcolepsy is a chronic and rare hypersomnia of central origin characterized by excessive daytime sleepiness and a complex array of symptoms as well as by several medical comorbidities. With growing pharmacological options, polytherapy may increase the possibility of a patient-centered management of narcolepsy symptoms. The aims of our study are to describe a large cohort of Italian patients with narcolepsy who were candidates for pitolisant treatment and to compare patients’ subgroups based on current drug prescription (drug-naïve patients in whom pitolisant was the first-choice treatment, switching to pitolisant from other monotherapy treatments, and adding on in polytherapy). Methods: We conducted a cross-sectional survey based on Italian data from the inclusion visits of the Post Authorization Safety Study of pitolisant, a 5-year observational, multicenter, international study. Results: One hundred ninety-one patients were enrolled (76.4% with narcolepsy type 1 and 23.6% with narcolepsy type 2). Most patients (63.4%) presented at least one comorbidity, mainly cardiovascular and psychiatric. Pitolisant was prescribed as an add-on treatment in 120/191 patients (62.8%), as switch from other therapies in 42/191 (22.0%), and as a first-line treatment in 29/191 (15.2%). Drug-naive patients presented more severe sleepiness, lower functional status, and a higher incidence of depressive symptoms. Conclusion: Our study presents the picture of a large cohort of Italian patients with narcolepsy who were prescribed with pitolisant, suggesting that polytherapy is highly frequent to tailor a patient-centered approach