USING COMPUTED TOMOGRAPHY SCANNING TECHNOLOGY TO EXTRACT VIRTUAL WOOD CORES, DERIVE WOOD DENSITY RADIAL PATTERNS, AND TEST HYPOTHESIS ABOUT DIRECTION, CORE SIZE, AND YEAR OF GROWTH

Computed tomography (CT) scanning technology was used to collect millions of three-dimensional data called “CT numbers”, on two sets of white spruce (Picea glauca [Moench] Voss) wood disks. Data collected were then converted to wood density estimates using a calibration equation for wood. Virtual wood cores with three different sizes (i.e., 1 voxel – the smallest volumetric unit on which a CT number was computed, 5 mm and 12 mm in diameter) were extracted from pith to bark and in four orthogonal directions. This made it possible to test the effects of core direction and size on the wood density estimates obtained. The average values as well as the radial patterns of wood density as estimated from CT scanning data were found to be typical of the values and patterns reported for the white spruce tree species in the literature, especially in relation to cambial age as the experimental trees were of different ages. In conclusion, wood science application of CT scanning technology allows extracting data subsets in 3D to perform density estimation, pattern analysis and hypothesis testing, and the results are valuable complements to those obtained with other technologies such as X-ray densitometry

Growth Rate Effects on Temporal Trajectories of Ring Width, Wood Density, and Mean Tracheid Length in Norway Spruce (Picea Abies (L.) Karst.)

The study reported was conducted on 20 fast-grown and 20 slow-grown Norway spruces (Picea abies (L.) Karst.) from an even-aged, plantation-grown stand near Rendeux, Belgian Ardennes. The objective was to test whether increasing the growth rate of Norway spruce by heavy thinnings had an effect on the temporal trajectories (i.e., fluctuations from year to year) of ring width, wood density, and mean tracheid length, all measured yearly from pith to bark. Since the data were chronologies (i.e., time series of yearly measurements), time had to be considered as a factor (i.e., the calendar year of ring formation) in the statistical analysis of the within-tree variation (repeated measures analysis of variance).While the effects of the growth category and its interaction with the year were highly significant after first thinning for ring width, a significant decrease in the wood density of fast-grown trees was observed in many years during that growing period; the decrease was small in magnitude, once averaged over years (-0.033 g/cm3). Tracheids were longer for the slow-grown trees after first thinning; although constant in sign and magnitude over years, the difference in mean tracheid length between growth categories was not statistically significant. In summary, increasing the growth rate in circumference of Norway spruce from 1.7 to 2.7 cm/year by heavy thinnings induced a limited decrease in wood density and mean tracheid length. These results support the statement that stand productivity might be improved without sensible loss of wood quality

Confocal Raman data analysis enables identifying apoptosis of MCF-7 cells caused by anticancer drug paclitaxel

Confocal Raman microscopy is a noninvasive, label-free imaging technique used to study apoptosis of live MCF-7 cells. The images are based on Raman spectra of cells components, and their apoptosis is monitored through diffusion of cytochrome c in cytoplasm. K-mean clustering is used to identify mitochondria in cells, and correlation analysis provides the cytochrome c distribution inside the cells. Our results demonstrate that incubation of cells for 3 h with 10 mu M of paclitaxel does not induce apoptosis in MCF-7 cells. On the contrary, incubation for 30 min at a higher concentration (100 mu M) of paclitaxel induces gradual release of the cytochrome c into the cytoplasm, indicating cell apoptosis via a caspase independent pathway. (C) 2013 Society of Photo-Optical Instrumentation Engineers (SPIE) [DOI: 10.1117/1.JBO.18.5.056010

Chemical treatment of the intra-canal dentin surface: a new approach to modify dentin hydrophobicity

Objective This study evaluated the hydrophobicity of dentin surfaces that were modified through chemical silanization with octadecyltrichlorosilane (OTS). Material and Methods An in vitro experimental study was performed using 40 human permanent incisors that were divided into the following two groups: non-silanized and silanized. The specimens were pretreated and chemically modified with OTS. After the chemical modification, the dentin hydrophobicity was examined using a water contact angle measurement (WCA). The effectiveness of the modification of hydrophobicity was verified by the fluid permeability test (FPT). Results and Conclusions Statistically significant differences were found in the values of WCA and FPT between the two groups. After silanization, the hydrophobic intraradicular dentin surface exhibited in vitro properties that limit fluid penetration into the sealed root canal. This chemical treatment is a new approach for improving the sealing of the root canal system

Effects of Local and Landscape Factors on Population Dynamics of a Cotton Pest

BACKGROUND: Many polyphagous pests sequentially use crops and uncultivated habitats in landscapes dominated by annual crops. As these habitats may contribute in increasing or decreasing pest density in fields of a specific crop, understanding the scale and temporal variability of source and sink effects is critical for managing landscapes to enhance pest control. METHODOLOGY/PRINCIPAL FINDINGS: We evaluated how local and landscape characteristics affect population density of the western tarnished plant bug, Lygus hesperus (Knight), in cotton fields of the San Joaquin Valley in California. During two periods covering the main window of cotton vulnerability to Lygus attack over three years, we examined the associations between abundance of six common Lygus crops, uncultivated habitats and Lygus population density in these cotton fields. We also investigated impacts of insecticide applications in cotton fields and cotton flowering date. Consistent associations observed across periods and years involved abundances of cotton and uncultivated habitats that were negatively associated with Lygus density, and abundance of seed alfalfa and cotton flowering date that were positively associated with Lygus density. Safflower and forage alfalfa had variable effects, possibly reflecting among-year variation in crop management practices, and tomato, sugar beet and insecticide applications were rarely associated with Lygus density. Using data from the first two years, a multiple regression model including the four consistent factors successfully predicted Lygus density across cotton fields in the last year of the study. CONCLUSIONS/SIGNIFICANCE: Our results show that the approach developed here is appropriate to characterize and test the source and sink effects of various habitats on pest dynamics and improve the design of landscape-level pest management strategies

Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling

Long-chain bases (LCBs) are pleiotropic sphingolipidic signals in eukaryotes. We investigated the source and function of phytosphingosine-1-phosphate (PHS-P), a phospho-LCB rapidly and transiently formed in Arabidopsis thaliana on chilling.PHS-P was analysed by thin-layer chromatography following in vivo metabolic radiolabelling. Pharmacological and genetic approaches were used to identify the sphingosine kinase isoforms involved in cold-responsive PHS-P synthesis. Gene expression, mitogen-activated protein kinase activation and growth phenotypes of three LCB kinase mutants (lcbk1, sphk1 and lcbk2) were studied following cold exposure. Chilling provoked the rapid and transient formation of PHS-P in Arabidopsis cultured cells and plantlets. Cold-evoked PHS-P synthesis was reduced by LCB kinase inhibitors and abolished in the LCB kinase lcbk2 mutant, but not in lcbk1 and sphk1 mutants. lcbk2 presented a constitutive AtMPK6 activation at 22°C. AtMPK6 activation was also triggered by PHS-P treatment independently of PHS/PHS-P balance. lcbk2 mutants grew comparably with wild-type plants at 22 and 4°C, but exhibited a higher root growth at 12°C, correlated with an altered expression of the cold-responsive DELLA gene RGL3. Together, our data indicate a function for LCBK2 in planta. Furthermore, they connect PHS-P formation with plant response to cold, expanding the field of LCB signalling in plants

Protein crystals in adenovirus type 5-infected cells: requirements for intranuclear crystallogenesis, structural and functional analysis

Intranuclear crystalline inclusions have been observed in the nucleus of epithelial cells infected with Adenovirus serotype 5 (Ad5) at late steps of the virus life cycle. Using immuno-electron microscopy and confocal microscopy of cells infected with various Ad5 recombinants modified in their penton base or fiber domains, we found that these inclusions represented crystals of penton capsomers, the heteromeric capsid protein formed of penton base and fiber subunits. The occurrence of protein crystals within the nucleus of infected cells required the integrity of the fiber knob and part of the shaft domain. In the knob domain, the region overlapping residues 489–492 in the FG loop was found to be essential for crystal formation. In the shaft, a large deletion of repeats 4 to 16 had no detrimental effect on crystal inclusions, whereas deletion of repeats 8 to 21 abolished crystal formation without altering the level of fiber protein expression. This suggested a crucial role of the five penultimate repeats in the crystallisation process. Chimeric pentons made of Ad5 penton base and fiber domains from different serotypes were analyzed with respect to crystal formation. No crystal was found when fiber consisted of shaft (S) from Ad5 and knob (K) from Ad3 (heterotypic S5-K3 fiber), but occurred with homotypic S3K3 fiber. However, less regular crystals were observed with homotypic S35-K35 fiber. TB5, a monoclonal antibody directed against the Ad5 fiber knob was found by immunofluorescence microscopy to react with high efficiency with the intranuclear protein crystals in situ. Data obtained with Ad fiber mutants indicated that the absence of crystalline inclusions correlated with a lower infectivity and/or lower yields of virus progeny, suggesting that the protein crystals might be involved in virion assembly. Thus, we propose that TB5 staining of Ad-infected 293 cells can be used as a prognostic assay for the viability and productivity of fiber-modified Ad5 vectors

Effect of Plant Structure on Searching Strategy and Searching Efficiency of Trichogramma turkestanica

When searching for hosts on a plant, female parasitoids use strategies to maximize efficiency. Searching strategies include the expressed behaviors, the time budget associated with each behavior, the time allocated to the different plant parts and the exploration sequence of plant parts. Searching efficiency refers to the time taken to find the first egg, the number of eggs found per foraging time unit and the re-encountering frequency of eggs during a foraging period. This study examines the effect of artificial simple (few leaves and connections) and complex plant structures (more leaves and connections) on searching strategy and searching efficiency of the egg parasitoid Trichogramma turkestanica Meyer (Hymenoptera: Trichogrammatidae). Analyses of frequency and duration of behaviors associated with searching on artificial plants of different complexities were performed. Plant structure had no effect on time associated with locomotion behaviors such as walking, standing and flying. However, it had an impact on the area searched, which was significantly greater on simple plant structure. Also, time spent on a leaf without encountering an egg was greater on complex plant structure compared to simple one. No significant differences were found between simple and complex plant structures regarding time spent walking on the different plant parts such as twigs, limbs, leaf perimeters, and limbs of inferior and superior leaf sides. Results showed that female parasitoids spent less time actively exploring complex than simple plants. Encountering and re-encountering frequencies of eggs were significantly greater on simple than on complex plant structure. Plant structure had no effect on handling time of eggs. This study demonstrates that plant structure can modulate activities inherent to searching and ovipositing, which in turn affects area searched per foraging time unit and therefore host finding success