MegaPipe: the MegaCam image stacking pipeline at the Canadian Astronomical Data Centre

This paper describes the MegaPipe image processing pipeline at the Canadian Astronomical Data Centre. The pipeline combines multiple images from the MegaCam mosaic camera on CFHT and combines them into a single output image. MegaPipe takes as input detrended MegaCam images and does a careful astrometric and photometric calibration on them. The calibrated images are then resampled and combined into image stacks. The astrometric calibration of the output images is accurate to within 0.15 arcseconds relative to external reference frames and 0.04 arcseconds internally. The photometric calibration is good to within 0.03 magnitudes. The stacked images and catalogues derived from these images are available through the CADC website:Comment: Data available at http://www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/megapipe/index.htm

The β6/β7 region of the Hsp70 substrate-binding domain mediates heat-shock response and prion propagation.

Hsp70 is a highly conserved chaperone that in addition to providing essential cellular functions and aiding in cell survival following exposure to a variety of stresses is also a key modulator of prion propagation. Hsp70 is composed of a nucleotide-binding domain (NBD) and substrate-binding domain (SBD). The key functions of Hsp70 are tightly regulated through an allosteric communication network that coordinates ATPase activity with substrate-binding activity. How Hsp70 conformational changes relate to functional change that results in heat shock and prion-related phenotypes is poorly understood. Here, we utilised the yeast [PSI +] system, coupled with SBD-targeted mutagenesis, to investigate how allosteric changes within key structural regions of the Hsp70 SBD result in functional changes in the protein that translate to phenotypic defects in prion propagation and ability to grow at elevated temperatures. We find that variants mutated within the β6 and β7 region of the SBD are defective in prion propagation and heat-shock phenotypes, due to conformational changes within the SBD. Structural analysis of the mutants identifies a potential NBD:SBD interface and key residues that may play important roles in signal transduction between domains. As a consequence of disrupting the β6/β7 region and the SBD overall, Hsp70 exhibits a variety of functional changes including dysregulation of ATPase activity, reduction in ability to refold proteins and changes to interaction affinity with specific co-chaperones and protein substrates. Our findings relate specific structural changes in Hsp70 to specific changes in functional properties that underpin important phenotypic changes in vivo. A thorough understanding of the molecular mechanisms of Hsp70 regulation and how specific modifications result in phenotypic change is essential for the development of new drugs targeting Hsp70 for therapeutic purposes

The Constitutive Relations and the Magnetoelectric Effect for Moving Media

In this paper the constitutive relations for moving media with homogeneous and isotropic electric and magnetic properties are presented as the connections between the generalized magnetization-polarization bivector $$ and the electromagnetic field F. Using the decompositions of F and $\mathcal{M}$, it is shown how the polarization vector P(x) and the magnetization vector M(x) depend on E, B and two different velocity vectors, u - the bulk velocity vector of the medium, and v - the velocity vector of the observers who measure E and B fields. These constitutive relations with four-dimensional geometric quantities, which correctly transform under the Lorentz transformations (LT), are compared with Minkowski's constitutive relations with the 3-vectors and several essential differences are pointed out. They are caused by the fact that, contrary to the general opinion, the usual transformations of the 3-vectors $$, $\mathbf{B}$, $\mathbf{P}$, $\mathbf{M}$, etc. are not the LT. The physical explanation is presented for the existence of the magnetoelectric effect in moving media that essentially differs from the traditional one.Comment: 18 pages, In Ref. [10] here, which corresponds to Ref. [18] in the published paper in IJMPB, Z. Oziewicz's published paper is added. arXiv admin note: text overlap with arXiv:1101.329

Information Transfer via Gonadotropin-Releasing Hormone Receptors to ERK and NFAT: Sensing GnRH and Sensing Dynamics

This is the final version of the article. Available from Oxford University Press via the DOI in this record.Information theoretic approaches can be used to quantify information transfer via cell signaling networks. In this study, we do so for gonadotropin-releasing hormone (GnRH) activation of extracellular signal-regulated kinase (ERK) and nuclear factor of activated T cells (NFAT) in large numbers of individual fixed LβT2 and HeLa cells. Information transfer, measured by mutual information between GnRH and ERK or NFAT, was <1 bit (despite 3-bit system inputs). It was increased by sensing both ERK and NFAT, but the increase was <50%. In live cells, information transfer via GnRH receptors to NFAT was also <1 bit and was increased by consideration of response trajectory, but the increase was <10%. GnRH secretion is pulsatile, so we explored information gained by sensing a second pulse, developing a model of GnRH signaling to NFAT with variability introduced by allowing effectors to fluctuate. Simulations revealed that when cell–cell variability reflects rapidly fluctuating effector levels, additional information is gained by sensing two GnRH pulses, but where it is due to slowly fluctuating effectors, responses in one pulse are predictive of those in another, so little information is gained from sensing both. Wet laboratory experiments revealed that the latter scenario holds true for GnRH signaling; within the timescale of our experiments (1 to 2 hours), cell–cell variability in the NFAT pathway remains relatively constant, so trajectories are reproducible from pulse to pulse. Accordingly, joint sensing, sensing of response trajectories, and sensing of repeated pulses can all increase information transfer via GnRH receptors, but in each case the increase is small.This work was supported by Biochemical and Biophysical Science Research Council Grant BBSRC BB/J014699/1 (to C.A.M. and K.T.-A.). M.V. acknowledges the support of the Medical Research Council (a strategic skills development fellowship in biomedical informatics) and the Engineering and Physical Sciences Research Council via Grant EP/N014391/1

Cilia at the node of mouse embryos sense fluid flow for left-right determination via Pkd2

Unidirectional fluid flow plays an essential role in the breaking of left-right (L-R) symmetry in mouse embryos, but it has remained unclear how the flow is sensed by the embryo. We report that the Ca2+ channel Polycystin-2 (Pkd2) is required specifically in the perinodal crown cells for sensing the nodal flow. Examination of mutant forms of Pkd2 shows that the ciliary localization of Pkd2 is essential for correct L-R patterning. Whereas Kif3a mutant embryos, which lack all cilia, failed to respond to an artificial flow, restoration of primary cilia in crown cells rescued the response to the flow. Our results thus suggest that nodal flow is sensed in a manner dependent on Pkd2 by the cilia of crown cells located at the edge of the node.CREST of the Japan Science and Technology Corporation; NIH [P30 DK090744]; Human Frontier Science Program [ST00246/2003C]; Deutsche Forschungsgemeinschaft [PE 853/2]; Japan Society for the Promotion of Science; American Heart Association [R10682]info:eu-repo/semantics/publishedVersio

New Light on the Formation and Evolution of M31 and its Globular Cluster System

We present spectroscopic ages, metallicities, and [alpha/Fe] ratios for 70 globular clusters in M31 that were derived from Lick line-index measurements. In addition to a population of old (>10 Gyr) globular clusters with a wide range of metallicities, from about -2.0 dex to solar values, we find evidence for a population of intermediate-age globular clusters with ages between ~5 and 8 Gyr and a mean metallicity around [Z/H]=-0.6. We also confirm the presence of young M31 globular clusters that were recently identified by Beasley et al. (2004), which have ages <1 Gyr and relatively high metallicities around -0.4 dex. The M31 globular cluster system has a clearly super-solar mean [alpha/Fe]=0.14\pm0.04 dex. Intermediate-age and young objects show roughly solar abundance ratios. We find evidence for an age-[alpha/Fe] relation in the sense that younger clusters have smaller mean [alpha/Fe] ratios. From a comparison of indices, mostly sensitive to carbon and/or nitrogen abundance, with SSP model predictions for nitrogen-enhanced stellar populations, we find a dichotomy in nitrogen enhancement between young and old M31 globular clusters. The indices of objects older than 5 Gyr are consistent with a factor of three or higher in nitrogen enhancement compared to their younger counterparts. Using kinematical data from Morrison et al. (2004) we find that the globular cluster sub-population with halo kinematics is old (>9 Gyr), has a bimodal metallicity distribution, and super-solar [alpha/Fe]. Disk globular clusters have a wider range of ages, are on average more metal-rich, and have a slightly smaller mean [alpha/Fe] ratio. (abridged)Comment: 32 pages, 12 figures, accepted for publication in A&

Rescaling Egocentric Vision: Collection, Pipeline and Challenges for EPIC-KITCHENS-100

This paper introduces the pipeline to extend the largest dataset in egocentric vision, EPIC-KITCHENS. The effort culminates in EPIC-KITCHENS-100, a collection of 100 hours, 20M frames, 90K actions in 700 variable-length videos, capturing long-term unscripted activities in 45 environments, using head-mounted cameras. Compared to its previous version (Damen in Scaling egocentric vision: ECCV, 2018), EPIC-KITCHENS-100 has been annotated using a novel pipeline that allows denser (54% more actions per minute) and more complete annotations of fine-grained actions (+128% more action segments). This collection enables new challenges such as action detection and evaluating the “test of time”—i.e. whether models trained on data collected in 2018 can generalise to new footage collected two years later. The dataset is aligned with 6 challenges: action recognition (full and weak supervision), action detection, action anticipation, cross-modal retrieval (from captions), as well as unsupervised domain adaptation for action recognition. For each challenge, we define the task, provide baselines and evaluation metrics.Published versionResearch at Bristol is supported by Engineering and Physical Sciences Research Council (EPSRC) Doctoral Training Program (DTP), EPSRC Fellowship UMPIRE (EP/T004991/1). Research at Catania is sponsored by Piano della Ricerca 2016-2018 linea di Intervento 2 of DMI, by MISE - PON I&C 2014-2020, ENIGMA project (CUP: B61B19000520008) and by MIUR AIM - Attrazione e Mobilita Internazionale Linea 1 - AIM1893589 - CUP E64118002540007

Supernova Shock Breakout from a Red Supergiant

Massive stars undergo a violent death when the supply of nuclear fuel in their cores is exhausted, resulting in a catastrophic "core-collapse" supernova. Such events are usually only detected at least a few days after the star has exploded. Observations of the supernova SNLS-04D2dc with the Galaxy Evolution Explorer space telescope reveal a radiative precursor from the supernova shock before the shock reached the surface of the star and show the initial expansion of the star at the beginning of the explosion. Theoretical models of the ultraviolet light curve confirm that the progenitor was a red supergiant, as expected for this type of supernova. These observations provide a way to probe the physics of core-collapse supernovae and the internal structures of their progenitor starsComment: Science, in press. 32 pages, 7 figure