Confusion of Tagged Perturbations in Forward Automatic Differentiation of Higher-Order Functions

Forward Automatic Differentiation (AD) is a technique for augmenting programs to both perform their original calculation and also compute its directional derivative. The essence of Forward AD is to attach a derivative value to each number, and propagate these through the computation. When derivatives are nested, the distinct derivative calculations, and their associated attached values, must be distinguished. In dynamic languages this is typically accomplished by creating a unique tag for each application of the derivative operator, tagging the attached values, and overloading the arithmetic operators. We exhibit a subtle bug, present in fielded implementations, in which perturbations are confused despite the tagging machinery

Reproducibility Assessment of Independent Component Analysis of Expression Ratios From DNA Microarrays

DNA microarrays allow the measurement of transcript abundances for thousands of genes in parallel. Most commonly, a particular sample of interest is studied next to a neutral control, examining relative changes (ratios). Independent component analysis (ICA) is a promising modern method for the analysis of such experiments. The condition of ICA algorithms can, however, depend on the characteristics of the data examined, making algorithm properties such as robustness specific to the given application domain. To address the lack of studies examining the robustness of ICA applied to microarray measurements, we report on the stability of variational Bayesian ICA in this domain. Microarray data are usually preprocessed and transformed. Hence we first examined alternative transforms and data selections for the smallest modelling reconstruction errors. Log-ratio data are reconstructed better than non-transformed ratio data by our linear model with a Gaussian error term. To compare ICA results we must allow for ICA invariance under rescaling and permutation of the extracted signatures, which hold the loadings of the original variables (gene transcript ratios) on particular latent variables. We introduced a method to optimally match corresponding signatures between sets of results. The stability of signatures was then examined after (1) repetition of the same analysis run with different random number generator seeds, and (2) repetition of the analysis with partial data sets. The effects of both dropping a proportion of the gene transcript ratios and dropping measurements for several samples have been studied. In summary, signatures with a high relative data power were very likely to be retained, resulting in an overall stability of the analyses. Our analysis of 63 yeast wildtype vs. wild-type experiments, moreover, yielded 10 reliably identified signatures, demonstrating that the variance observed is not just noise

enhancing the circular economy with nature based solutions in the built urban environment green building materials systems and sites

Abstract The objective of this review paper is to survey the state of the art on nature-based solutions (NBS) in the built environment, which can contribute to a circular economy (CE) and counter the negative impacts of urbanization through the provision of ecosystem services. NBS are discussed here at three different levels: (i) green building materials, including biocomposites with plant-based aggregates; (ii) green building systems, employed for the greening of buildings by incorporating vegetation in their envelope; and (iii) green building sites, emphasizing the value of vegetated open spaces and water-sensitive urban design. After introducing the central concepts of NBS and CE as they are manifested in the built environment, we examine the impacts of urban development and the historical use of materials, systems and sites which can offer solutions to these problems. In the central section of the paper we present a series of case studies illustrating the development and implementation of such solutions in recent years. Finally, in a brief critical analysis we look at the ecosystem services and disservices provided by NBS in the built environment, and examine the policy instruments which can be leveraged to promote them in the most effective manner – facilitating the future transition to fully circular cities

Closing Water Cycles in the Built Environment through Nature-Based Solutions: The Contribution of Vertical Greening Systems and Green Roofs

Water in the city is typically exploited in a linear process, in which most of it is polluted, treated, and discharged; during this process, valuable nutrients are lost in the treatment process instead of being cycled back and used in urban agriculture or green space. The purpose of this paper is to advance a new paradigm to close water cycles in cities via the implementation of naturebased solutions units (NBS_u), with a particular focus on building greening elements, such as green roofs (GRs) and vertical greening systems (VGS). The hypothesis is that such “circular systems” can provide substantial ecosystem services and minimize environmental degradation. Our method is twofold: we first examine these systems from a life-cycle point of view, assessing not only the inputs of conventional and alternative materials, but the ongoing input of water that is required for irrigation. Secondly, the evapotranspiration performance of VGS in Copenhagen, Berlin, Lisbon, Rome, Istanbul, and Tel Aviv, cities with different climatic, architectural, and sociocultural contexts have been simulated using a verticalized ET0 approach, assessing rainwater runoff and greywater as irrigation resources. The water cycling performance of VGS in the mentioned cities would be sufficient at recycling 44% (Lisbon) to 100% (Berlin, Istanbul) of all accruing rainwater roof–runoff, if water shortages in dry months are bridged by greywater. Then, 27–53% of the greywater accruing in a building could be managed on its greened surface. In conclusion, we address the gaps in the current knowledge and policies identified in the different stages of analyses, such as the lack of comprehensive life cycle assessment studies that quantify the complete “water footprint” of building greening systems.info:eu-repo/semantics/publishedVersio

Towards a Cross-Sectoral View of Nature-Based Solutions for Enabling Circular Cities

A framework developed by the COST Action Circular City (an EU-funded network of 500+ scientists from 40+ countries; COST = Cooperation in Science and Technology) for addressing Urban Circularity Challenges (UCCs) with nature-based solutions (NBSs) was analyzed by various urban sectors which refer to different fields of activities for circular management of resources in cities (i.e., reducing use of resources and production of waste). The urban sectors comprise the built environment, urban water management, resource recovery, and urban farming. We present main findings from sector analyses, discuss different sector perspectives, and show ways to overcome these differences. The results reveal the potential of NBSs to address multiple sectors, as well as multiple UCCs. While water has been identified as a key element when using NBSs in the urban environment, most NBSs are interconnected and also present secondary benefits for other resources. Using representative examples, we discuss how a holistic and systemic approach could facilitate the circular use of resources in cities. Currently, there is often a disciplinary focus on one resource when applying NBSs. The full potential of NBSs to address multifunctionality is, thus, usually not fully accounted for. On the basis of our results, we conclude that experts from various disciplines can engage in a cross-sectoral exchange and identify the full potential of NBSs to recover resources in circular cities and provide secondary benefits to improve the livelihood for locals. This is an important first step toward the full multifunctionality potential enabling of NBSs

Knowledge transfer between stakeholders in the field of urban forestry and green infrastructure: Results of a European survey

The establishment and management of green infrastructure in cities require the involvement of a complex network of stakeholder groups, who may differ sharply from one another in their expectations and approaches. Bridging the communication gaps between them is essential for creating and maintaining urban green spaces and expressing their full potential and multi-functionality. In this research, we investigate the ways that knowledge is transferred from one stakeholder group to another, and we identify the relative strengths and weaknesses of the different modes by which these actors collaborate and interact in practice. Data obtained from this first-ever exploratory survey of public administrators, practitioners and academic researchers involved with urban green infrastructure in Italy and other European - but also some extra-European - countries indicate that there are positive attitudes toward forms of collaboration, mainly because of the need to achieve common aims such as encouraging innovation, identifying practical problem solutions and accessing sources of funding. Our analysis suggests that stakeholders need to better understand the importance of forming cohesive teams, of optimizing financial resources, and of finding a common language to bridge their diverse disciplinary backgrounds. To be effective, future models of knowledge transfer will have to consider the current needs of end users without neglecting the long-term potential of emerging communication technologies such as e-learning, and vocational training must not only be based on high-quality content, it must also include practical activities and facilitate personal contact that can lead to enhanced collaboration