Private Cell Retrieval from Data Warehouses

© 2015 IEEE. Publicly accessible data warehouses are an indispensable resource for data analysis. However, they also pose a significant risk to the privacy of the clients, since a data warehouse operator may follow the client's queries and infer what the client is interested in. Private information retrieval (PIR) techniques allow the client to retrieve a cell from a data warehouse without revealing to the operator which cell is retrieved and, therefore, protects the privacy of the client's queries. However, PIR cannot be used to hide online analytical processing (OLAP) operations performed by the client, which may disclose the client's interest. This paper presents a solution for private cell retrieval from a data warehouse on the basis of the Paillier cryptosystem. By our solution, the client can privately perform OLAP operations on the data warehouse and retrieve one (or more) cell without revealing any information about which cell is selected. In addition, we propose a solution for private block download on the basis of the Paillier cryptosystem. Our private block download allows the client to download an encrypted block from a data warehouse without revealing which block in a cloaking region is downloaded and improves the feasibility of our private cell retrieval. Our solutions ensure both the server's privacy and the client's privacy. Our experiments have shown that our solutions are practical

Review of the African distribution of the brine shrimp genus Artemia

Brine shrimp (genus Artemia) are small (8 to 12 mm long) cosmopolitan crustaceans (Anostraca) found predominately in hypersaline water bodies such as inland salt lakes and pans, coastal lagoons, and salt works at salinity levels above 40 g(.)l[superscript(-1)]. They have been extensively studied due to their high monetary value as food for larval fish in aquaculture and their unique reproductive strategies. Brine shrimp occur as either bisexual species or as parthenogenetic populations. Despite published reviews of their world-wide distribution little is known about their occurrence in Africa. This review adds new information about 70 African Artemia sites and lists 26 potential sites and their coordinates. Sixteen sites in Southern Africa and Namibia were visited during a collecting trip, and new information on the reproductive mode of nine of these sites is given. Several South African populations exhibit bisexual reproduction. In Namibia there are two parthenogenetic populations (Walvis Bay and Swartkops) and an additional bisexual population (Hentie's Bay). A mixed population (bisexual and parthenogenetic reproduction at the same site) was found at Coega, South Africa

Macrofauna de invertebrados del Cretácico superior de la Depresión Central Asturiana

Se reporta y comenta la fauna de inocerámidos, rudistas, ammonites, braquiópodos y equmnidos recogida y localizada en yacimientos o series estratigráficas de detalle, durante los trabajos de campo de la tesis doctoral del primero de los autores (E.B.) sobre los seláceos del Cretácico de Asturias. La distribución, principalmente de inocerámidos y ammonites, permite identificar el Cenomaniense superior y el Turoniense inferior y medio. Se han reconocido rudistas del Turoniense superior y del Coniaciense, braquiópodos del Cenomaniense y del Santoniense inferior y un registro relativamente rico y variado de equínidos desde el Cenomaniense hasta el Coniaciense.The fauna collected and located on fossil localities or stratigraphical profiles, during the field work of the first author's doctoral thesis on the Cretaceous selachians from Asturias, is reported and commented. It includes inoceramids, rudists, ammonoids, brachiopods and echinoids. Distribution of, mainly inoceramids and ammonoids, allowed to identify the Upper Cenomanian and the Lower and Middle Turonian. LateTuronian and Coniacian rudists have been recognized, as well as Cenomanian and lower Santonian brachiopods and a quite rich and diversified record of echinoids ranging from Cenomanian to Coniacian

Search for the best indicators for the presence of a VPS13B gene mutation and confirmation of diagnostic criteria in a series of 34 patients genotyped for suspected Cohen syndrome

BACKGROUND: Cohen syndrome is a rare autosomal recessive inherited disorder that results from mutations of the VPS13B gene. Clinical features consist of a combination of mental retardation, facial dysmorphism, postnatal microcephaly, truncal obesity, slender extremities, joint hyperextensibility, myopia, progressive chorioretinal dystrophy, and intermittent neutropenia.PATIENTS AND METHODS: The aim of the study was to determine which of the above clinical features were the best indicators for the presence of VPS13B gene mutations in a series of 34 patients with suspected Cohen syndrome referred for molecular analysis of VPS13B. RESULTS: 14 VPS13B gene mutations were identified in 12 patients, and no mutation was found in 22 patients. The presence of chorioretinal dystrophy (92% vs 32%, p=0.0023), intermittent neutropenia (92% vs 5%, p<0.001), and postnatal microcephaly (100% vs 48%, p=0.0045) was significantly higher in the group of patients with a VPS13B gene mutation compared to the group of patients without a mutation. All patients with VPS13B mutations had chorioretinal dystrophy and/or intermittent neutropenia. The Kolehmainen diagnostic criteria provided 100% sensibility and 77% specificity when applied to this series. CONCLUSION: From this study and a review of more than 160 genotyped cases from the literature, it is concluded that, given the large size of the gene, VPS13B screening is not indicated in the absence of chorioretinal dystrophy or neutropenia in patients aged over 5 years. The follow-up of young patients could be a satisfactory alternative unless there are some reproductive issues

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than 600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties (i.e. grubii and neoformans, respectively). Here, we sequenced the genome and performed an RNA-Seq-based analysis of the C. neoformans var. grubii transcriptome structure. We determined the chromosomal locations, analyzed the sequence/structural features of the centromeres, and identified origins of replication. The genome was annotated based on automated and manual curation. More than 40,000 introns populating more than 99% of the expressed genes were identified. Although most of these introns are located in the coding DNA sequences (CDS), over 2,000 introns in the untranslated regions (UTRs) were also identified. Poly(A)-containing reads were employed to locate the polyadenylation sites of more than 80% of the genes. Examination of the sequences around these sites revealed a new poly(A)-site-associated motif (AUGHAH). In addition, 1,197 miscRNAs were identified. These miscRNAs can be spliced and/or polyadenylated, but do not appear to have obvious coding capacities. Finally, this genome sequence enabled a comparative analysis of strain H99 variants obtained after laboratory passage. The spectrum of mutations identified provides insights into the genetics underlying the micro-evolution of a laboratory strain, and identifies mutations involved in stress responses, mating efficiency, and virulence

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

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Role of Plant-Specific N-Terminal Domain of Maize CK2β1 Subunit in CK2β Functions and Holoenzyme Regulation

Protein kinase CK2 is a highly pleiotropic Ser/Thr kinase ubiquituous in eukaryotic organisms. CK2 is organized as a heterotetrameric enzyme composed of two types of subunits: the catalytic (CK2α) and the regulatory (CK2β). The CK2β subunits enhance the stability, activity and specificity of the holoenzyme, but they can also perform functions independently of the CK2 tetramer. CK2β regulatory subunits in plants differ from their animal or yeast counterparts, since they present an additional specific N-terminal extension of about 90 aminoacids that shares no homology with any previously characterized functional domain. Sequence analysis of the N-terminal domain of land plant CK2β subunit sequences reveals its arrangement through short, conserved motifs, some of them including CK2 autophosphorylation sites. By using maize CK2β1 and a deleted version (ΔNCK2β1) lacking the N-terminal domain, we have demonstrated that CK2β1 is autophosphorylated within the N-terminal domain. Moreover, the holoenzyme composed with CK2α1/ΔNCK2β1 is able to phosphorylate different substrates more efficiently than CK2α1/CK2β1 or CK2α alone. Transient overexpression of CK2β1 and ΔNCK2β1 fused to GFP in different plant systems show that the presence of N-terminal domain enhances aggregation in nuclear speckles and stabilizes the protein against proteasome degradation. Finally, bimolecular fluorescence complementation (BiFC) assays show the nuclear and cytoplasmic location of the plant CK2 holoenzyme, in contrast to the individual CK2α/β subunits mainly observed in the nucleus. All together, our results support the hypothesis that the plant-specific N-terminal domain of CK2β subunits is involved in the down-regulation of the CK2 holoenzyme activity and in the stabilization of CK2β1 protein. In summary, the whole amount of data shown in this work suggests that this domain was acquired by plants for regulatory purposes

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes

X-linked intellectual disability (XLID) is a clinically and genetically heterogeneous disorder. During the past two decades in excess of 100 X-chromosome ID genes have been identified. Yet, a large number of families mapping to the X-chromosome remained unresolved suggesting that more XLID genes or loci are yet to be identified. Here, we have investigated 405 unresolved families with XLID. We employed massively parallel sequencing of all X-chromosome exons in the index males. The majority of these males were previously tested negative for copy number variations and for mutations in a subset of known XLID genes by Sanger sequencing. In total, 745 X-chromosomal genes were screened. After stringent filtering, a total of 1297 non-recurrent exonic variants remained for prioritization. Co-segregation analysis of potential clinically relevant changes revealed that 80 families (20%) carried pathogenic variants in established XLID genes. In 19 families, we detected likely causative protein truncating and missense variants in 7 novel and validated XLID genes (CLCN4, CNKSR2, FRMPD4, KLHL15, LAS1L, RLIM and USP27X) and potentially deleterious variants in 2 novel candidate XLID genes (CDK16 and TAF1). We show that the CLCN4 and CNKSR2 variants impair protein functions as indicated by electrophysiological studies and altered differentiation of cultured primary neurons from Clcn4−/− mice or after mRNA knock-down. The newly identified and candidate XLID proteins belong to pathways and networks with established roles in cognitive function and intellectual disability in particular. We suggest that systematic sequencing of all X-chromosomal genes in a cohort of patients with genetic evidence for X-chromosome locus involvement may resolve up to 58% of Fragile X-negative cases