A Novel Soluble Immune-Type Receptor (SITR) in Teleost Fish: Carp SITR Is Involved in the Nitric Oxide-Mediated Response to a Protozoan Parasite

Background- The innate immune system relies upon a wide range of germ-line encoded receptors including a large number of immunoglobulin superfamily (IgSF) receptors. Different Ig-like immune receptor families have been reported in mammals, birds, amphibians and fish. Most innate immune receptors of the IgSF are type I transmembrane proteins containing one or more extracellular Ig-like domains and their regulation of effector functions is mediated intracellularly by distinct stimulatory or inhibitory pathways. Methodology/Principal Findings - Carp SITR was found in a substracted cDNA repertoire from carp macrophages, enriched for genes up-regulated in response to the protozoan parasite Trypanoplasma borreli. Carp SITR is a type I protein with two extracellular Ig domains in a unique organisation of a N-proximal V/C2 (or I-) type and a C-proximal V-type Ig domain, devoid of a transmembrane domain or any intracytoplasmic signalling motif. The carp SITR C-proximal V-type Ig domain, in particular, has a close sequence similarity and conserved structural characteristics to the mammalian CD300 molecules. By generating an anti-SITR antibody we could show that SITR protein expression was restricted to cells of the myeloid lineage. Carp SITR is abundantly expressed in macrophages and is secreted upon in vitro stimulation with the protozoan parasite T. borreli. Secretion of SITR protein during in vivo T. borreli infection suggests a role for this IgSF receptor in the host response to this protozoan parasite. Overexpression of carp SITR in mouse macrophages and knock-down of SITR protein expression in carp macrophages, using morpholino antisense technology, provided evidence for the involvement of carp SITR in the parasite-induced NO production. Conclusion/Significance - We report the structural and functional characterization of a novel soluble immune-type receptor (SITR) in a teleost fish and propose a role for carp SITR in the NO-mediated response to a protozoan parasite

Variations climatiques et glacio-eustatiques dans le Golfe du Lion : une approche couplée des isotopes stables et radiogéniques

By its position, the Gulf of Lion is an ideal location for investigation of past ecological changes and processes affecting the sedimentary deposition. Previous work has highlighted the impacts of climatic and glacio-eustatic changes on the GoL stratigraphic organization, but also on terrestrial exports of organic matter.This isotopic study based on the organic carbon and nitrogen preserved in PRGL1-4 sediments highlights important rivers runoff during warm periods of the last 200 000 years.Regional intercomparison with terrestrial and marine records indicates that these river exports resulting from an increase of precipitation over the North Mediterranean borderland.Using PRGL1-4 location, out of Mediterranean cyclogenetic area, we suggest that these pluvial events occurred in response to enhance passage of North Atlantic atmospheric perturbation into the Western Mediterranean basin.Pyrite sulfur isotopes investigations over the last 500 kyr have also been done. The stratigraphic variations (up to 76‰) in the isotopic data reported here are among the largest ever observed in pyrite, and are in phase with glacial-interglacial sea level. These results suggest that there exist important but previously overlooked depositional controls on sedimentary sulfur isotope records. Two different mechanisms influencing the isotopic fractionation can explain the observed dataset: a climatic modulation of the bacterial activity, and / or (ii) a local sedimentary modulation involve during early diagenetic formation of pyrite in relation with the eustatic variations.De par sa position, le Golfe du Lion est un site idéal pour l’investigation des changements paléo-environnementaux et des processus affectant le dépôt sédimentaire. Les travaux antérieurs ont permis de mettre en évidence les impacts de la variabilité climatique et glacioeustatique sur l’organisation stratigraphique de la marge, mais également sur les exports terrestres de matière organique.L’étude isotopique du carbone organique et de l’azote de la matière organique dans les sédiments du forage PRGL1-4 nous a permis de mettre en évidence de forts exports fluviaux lors des interstades survenus au cours des 200 000 derniers milles ans. La mise en regard de cette découverte avec les enregistrements paléo-climatologiques terrestre et marin disponibles dans la région indique que ces forts exports fluviaux résultent d’une augmentation des précipitations le long de la bordure Nord Méditerranéenne. Grâce à la position dePRGL1-4, nous proposons que ces pluies soient le résultat d’une augmentation du passage de dépressions Nord Atlantique dans le bassin Ouest Méditerranéen.Une caractérisation des isotopes du soufre préservés dans la pyrite sédimentaire a été réalisée. Les résultats obtenus ont permis de mettre en évidence une variation isotopique insoupçonnée, l’une des plus grandes observées de nos jours, dont la cyclicité semble indiquer un fort contrôle climatique. Nous proposons deux mécanismes influençant le fractionnement isotopique: une modulation de l’activité bactérienne par le climat, et/ou (ii) une modulation locale liée la nature des sédiments impliqués dans la formation des pyrites en lien avec les variations eustatiques

Sedimentary pyrite sulfur isotopes track the local dynamics of the Peruvian oxygen minimum zone from ODP Hole 201-1229E

Sulfur cycling is ubiquitous in sedimentary environments, where it mediates organic carbon remineralization, impacting both local and global redox budgets, and leaving an imprint in pyrite sulfur isotope ratios (δ34Spyr). It is unclear to what extent stratigraphic δ34Spyr variations reflect local aspects of the depositional environment or microbial activity versus global sulfur-cycle variations. Here, we couple carbon-nitrogen-sulfur concentrations and stable isotopes to identify clear influences on δ34Spyr of local environmental changes along the Peru margin. Stratigraphically coherent glacial-interglacial δ34Spyr fluctuations (>30‰) were mediated by Oxygen Minimum Zone intensification/expansion and local enhancement of organic matter deposition. The higher resulting microbial sulfate reduction rates led to more effective drawdown and 34S-enrichment of residual porewater sulfate and sulfide produced from it, some of which is preserved in pyrite. We identify organic carbon loading as a major influence on δ34Spyr, adding to the growing body of evidence highlighting the local controls on these records

Strong local, not global, controls on marine pyrite sulfur isotopes

Understanding variation in the sulfur isotopic composition of sedimentary pyrite (δ34Spyr) is motivated by the key role of sulfur biogeochemistry in regulating Earth's surface oxidation state. Until recently, the impact of local depositional conditions on δ34Spyr has remained underappreciated, and stratigraphic variations in δ34Spyr were interpreted mostly to reflect global changes in biogeochemical cycling. We present two coeval δ34Spyr records from shelf and basin settings in a single sedimentary system. Despite their proximity and contemporaneous deposition, these two records preserve radically different geochemical signals. Swings of ~65‰ in shelf δ34Spyr track short-term variations in local sedimentation and are completely absent from the abyssal record. In contrast, a long-term ~30‰ decrease in abyssal δ34Spyr reflects regional changes in ocean circulation and/or sustained pyrite formation. These results highlight strong local controls on δ34Spyr, calling for reevaluation of the current practice of using δ34Spyr stratigraphic variations to infer global changes in Earth's surface environment

Natural stable isotopes ratios and associated elemental concentrations of sediment core PRGL 1-4 from the Gulf on Lion

Natural stable isotopes ratios (d13Corg and d15N) and associated elemental concentrations (i.e. total organic carbon and total nitrogen contents) preserved in marine sediments are frequently used for the determination of paleoenvironmental processes such as the organic-matter origin. Previous studies highlighted bias in the determination of such geochemical proxies due to pre-analysis acid treatment methods. This study is the first systematic comparison of the effect of acid treatment methods on bulk organic-matter using a unique sedimentary system, under glacial and interglacial conditions. We used the common method for pre-treatment analysis, which consists of acidification of bulk sediment followed by several de-ionised water rinses. We investigated the effect of acid type (i.e. Hydrochloric acid and Acetic acid), but also strength (from 0.2 to 10 mol/l) on the d13Corg, d15N, TOC, TN and C/N ratio on three samples from the Gulf of Lion. Two (i.e. S.302 and S.102) were deposited during glacial maxima whereas S.157 characterizes interglacial conditions. Samples d13Corg values range between -21.7 and -24.4 per mil with TOC varying from 0.56 and 0.84 %wt/wt. d15N values is more stable with an average value of 3.0 ± 0.1 per mil with a TN average of 0.08 ± 0.002 %wt/wt. We show that acid type did not significantly affect results. We also find that (i) glacial and interglacial samples do not react similarly to acid pre-treatment, (ii) high acid strength (>1.5 mol/l) induce significant bias on d13Corg values, TOC values and therefore on C/N ratio; (iii) 25% of an isotopically distinct pool of organic carbon was lost between the use of 0.2 mol/l and 1.5 mol/l affecting d13Corg values by more than 1.5 per mil; (iv) geochemical evidences indicate that the leachable organic-carbon pool is preferentially composed of terrestrial organic-matter. These findings call for precautions when using C/N ratios and associated d13Corgvalues for paleoenvironmental and climate reconstructions

Depth, estimated age, and associated geochemical information from sediment core PRGL 1-4

The terrigenous sedimentary budget of passive margin records variations in past sedimentary fluxes, and thus can be used to infer past variations of Earth surface deformation processes, or climate change. Accurate estimates of sediment fluxes over various times scale and space-scale are therefore crucial. Traditionally, offshore sediment sequence volumes take into account only siliciclastic accumulation, the carbonate fraction being considered only as in-situ production (i.e. CaCO3). Here we propose a new geochemical methodology to decipher and quantify the amount of detrital carbonates in comparison to in-situ produced biogenic carbonates. This isotopic approach enables taking into account the export of detrital carbonates, and investigating its effect on sediment budgets. This study, located in the Gulf of Lion, is based on a 300 m long sediment borehole located near the shelf break and covering the last 500 000 years (i.e. 5 glacial-interglacial periods). 86Sr/87Sr isotopic data (0.70809 to 0.70858) are significantly less radiogenic than modern seawater (i.e. 0.7092) and show fluctuations in agreement with stratigraphic and climatic variations. These results suggest an unsuspected high export of detrital carbonates from the catchment area during both glacial (between 55 to 85% of the sedimentary carbonate fraction) and interglacial (between 30 to 50%) conditions. Thus, not only do detrital carbonate fluxes need to be factored into sediment flux calculations, these results suggest that detrital carbonate components could potentially have a strong influence on carbonate 86Sr/87Sr ratios when not obtained from microdrilled biogenic carbonates, such as the entirety of the Precambrian Sr chemostratigraphic record

Stable isotopes (δ¹³Corg and d15N) from sediment core PRGL_1-4

In this study we use bulk sediment organic matter stable isotopes (d13Corg and d15N) to examine the nature and timing of preserved organic matter in borehole PRGL1-4 from Northwestern Mediterranean Sea. This region is known as a transitional zone between the North Atlantic atmospheric circulation and the North African monsoon system. In the Gulf of Lion (SE France), increased inputs of organic matter from sediment-laden rivers occurred during warm substages of the last 200 kyr (MIS 5e, 5c, and 5a; MIS 6d, and 6b). Increased terrestrial organic matter are inferred from organic carbon isotopic composition (d13Corg), and are interpreted as resulting from enhanced rainfall over the Rhone river catchment area. Such increase in terrestrial organic carbon induced enhancement of the primary productivity leading to the formation of local oxygen minimum zone as demonstrated by ~3‰ values in d15N. Comparison with regional paleohydrological records from the northern Mediterranean borderlands reveals the regional character of these pluvial events. Taking advantage of the location of PRGL1-4 borehole, out of Mediterranean cyclogenesis area, we suggest that the pluvial events recorded during warm substages of the last 200 kyr occurred in response to enhanced passage of North Atlantic atmospheric perturbation over the Gulf of Lion catchment area (especially over Rhone river watershed which represents 80% of the GoL catchment area), a scenario possibly similar to that encountered today during negative- NAO like conditions. At a regional scale, our data suggests that high rainfall events over the Gulf of Lion catchement area and the Rhone watershed occurred at the time of North African summer monsoon and the sapropel deposition in the Mediterranean basin, thus highlighting a close coupling between mid- (North Atlantic) and low-latitudes (monsoon) climate systems. Importantly, our geochemical evidence from the Gulf of Lion support an extra-Mediterranean source for the regional pluvial events described in many paleoclimatic records from the northern Mediterrean borderlands during warm substages of the last climate cycles. Consequently, we suggest that this region as a whole could provide, in addition to the river runoff from the North African sector, the necessary conditions for the sapropel depositio

Pyrite sulfur isotopes reveal glacial−interglacial environmental changes

International audienceThe sulfur biogeochemical cycle plays a key role in regulating Earth’s surface redox through diverse abiotic and biological reactions that have distinctive stable isotopic fractionations. As such, variations in the sulfur isotopic composition (δ34S) of sedimentary sulfate and sulfide phases over Earth history can be used to infer substantive changes to the Earth’s surface environment, including the rise of atmospheric oxygen. Such inferences assume that individual δ34S records reflect temporal changes in the global sulfur cycle; this assumption may be well grounded for sulfate-bearing minerals but is less well established for pyrite-based records. Here, we investigate alternative controls on the sedimentary sulfur isotopic composition of marine pyrite by examining a 300-m drill core of Mediterranean sediments deposited over the past 500,000 y and spanning the last five glacial−interglacial periods. Because this interval is far shorter than the residence time of marine sulfate, any change in the sulfur isotopic record preserved in pyrite (δ34Spyr) necessarily corresponds to local environmental changes. The stratigraphic variations (>76‰) in the isotopic data reported here are among the largest ever observed in pyrite, and are in phase with glacial−interglacial sea level and temperature changes. In this case, the dominant control appears to be glacial−interglacial variations in sedimentation rates. These results suggest that there exist important but previously overlooked depositional controls on sedimentary sulfur isotope records, especially associated with intervals of substantial sea level change. This work provides an important perspective on the origin of variability in such records and suggests meaningful paleoenvironmental information can be derived from pyrite δ34S records

Geochemistry of sediment core PRGL1-4

The sulfur biogeochemical cycle plays a key role in regulating Earth's surface redox through diverse abiotic and biological reactions that have distinctive stable isotopic fractionations. As such, variations in the sulfur isotopic composition (d34S) of sedimentary sulfate and sulfide phases over Earth history can be used to infer substantive changes to the Earth's surface environment, including the rise of atmospheric oxygen. Such inferences assume that individual d34S records reflect temporal changes in the global sulfur cycle; this assumption may be well grounded for sulfate-bearing minerals but is less well established for pyrite-based records. Here, we investigate alternative controls on the sedimentary sulfur isotopic composition of marine pyrite by examining a 300-m drill core of Mediterranean sediments deposited over the past 500,000 y and spanning the last five glacial-interglacial periods. Because this interval is far shorter than the residence time of marine sulfate, any change in the sulfur isotopic record preserved in pyrite (d34Spyr) necessarily corresponds to local environmental changes. The stratigraphic variations (>76 per mil) in the isotopic data reported here are among the largest ever observed in pyrite, and are in phase with glacial-interglacial sea level and temperature changes. In this case, the dominant control appears to be glacial-interglacial variations in sedimentation rates. These results suggest that there exist important but previously overlooked depositional controls on sedimentary sulfur isotope records, especially associated with intervals of substantial sea level change. This work provides an important perspective on the origin of variability in such records and suggests meaningful paleoenvironmental information can be derived from pyrite d34S records