A phytosociological investigation on the mixed hemycryptophitic and therophitic grasslands of the Cornicolani mountains (Lazio Region – central Italy)

Abstract In this paper a phytosociological study on the dry grasslands of the Cornicolani mountains is presented. The Cornicolani are a group of isolated limestone hills which emerge from the slightly ondulating grounds of the Rome countryside in the Tyrrhenian side of the central Italy. Eighty-nine relevés were performed using the Braun-Blanquet phytosociological approach. These were further subjected to hierarchical classification and to NMDS ordination. Five major types of grasslands were distinguished: short therophytic grasslands developed on shallow soils dominated, in turns, by Hypochaeris achyrophorus, Plantago lagopus and Plantago bellardii; sub-nitrophilous detriticolous perennial grasslands dominated by Dittrichia viscosa and Helichrysum italicum; Dasypyrum villosum and Vulpia ligustica lawn and fallow annual tall-grasslands; Ampelodesmos mauritanicus grasslands of the rocky S-facing slopes and sub-mesophilous Lolium perenne and Cynodon dactylon grasslands of the flat and pastured areas. From a syntaxonomical standpoint a new associations named Plantaginetum afrae-bellardii was proposed and included in the class Stipo-Trachynetea. In addition the association Helichryso italici-Inuletum viscosae Trinajstić 1965 (nom. inval.) was here validated

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay

The transcriptome in a cell is finely regulated by a large number of molecular mechanisms able to control the balance between mRNA production and degradation. Recent experimental findings have evidenced that fine and specific regulation of degradation is needed for proper orchestration of a global cell response to environmental conditions. We developed a computational technique based on stochastic modeling, to infer condition-specific individual mRNA half-lives directly from gene expression time-courses. Predictions from our method were validated by experimentally measured mRNA decay rates during the intraerythrocytic developmental cycle of Plasmodium falciparum. We then applied our methodology to publicly available data on the reproductive and metabolic cycle of budding yeast. Strikingly, our analysis revealed, in all cases, the presence of periodic changes in decay rates of sequentially induced genes and co-ordination strategies between transcription and degradation, thus suggesting a general principle for the proper coordination of transcription and degradation machinery in response to internal and/or external stimuli. Citation: Cacace F, Paci P, Cusimano V, Germani A, Farina L (2012) Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay. PLoS Comput Biol 8(11): e1002772. doi:10.1371/journal.pcbi.100277

Serum carcinoembryonic antigen pre-operative level in colorectal cancer: revisiting risk stratification

BackgroundResults Biomarkers may play a role as predictive and prognostic factors in colorectal cancer patients. The aims of the study were to verify the prognostic role of pre-operative serum carcinoembryonic antigen (CEA) level in predicting overall survival and risk of recurrence in a cohort of colorectal cancer patients and to evaluate optimal cut-off values.Methods A retrospective cohort analysis was performed on colorectal cancer patients undergoing elective curative surgery between 2004 and 2019 at an Italian Academic Hospital. Main outcomes were overall survival, disease-free survival at 3-years and risk of local, loco-regional and distant recurrence during follow-up. A receiver operating characteristic (ROC) curve analysis was plotted using CEA pre-operative values and follow-up data in order to estimate the optimal cut-off values.A total of 559 patients were considered. The mean CEA value was 12.1 +/- 54.1 ng/mL, and the median 29.3 (0-4995) ng/mL. The ROC curve analysis identified 12.5 ng/mL as the best CEA cut-off value to predict the risk of metastatic development after surgery in stage I-III colorectal cancer patients, and 10 ng/mL as the best CEA cut-off value to predict overall survival and disease-free survival in stage III-IV patients. These data suggest a stratification of colorectal cancer patients in three classes of risk: a low risk class (CEA <10 ng/mL), a moderate risk class (CEA 10-12.5 ng/mL) and a high risk class (CEA >12.5 ng/mL).Conclusion In conclusion, pre-operative serum CEA measurements could integrate information to enhance patient risk stratification and tailored therapy

Efeito do sistema de cultivo e manejo do solo no estabelecimento de soja em terras baixas/ Effect of the growing and soil management system on soybean establishment

Objetivou-se com o trabalho avaliar a resposta das plantas da soja implantada em diferentes sistemas de cultivo e manejo do solo, no estabelecimento da cultura em terras baixas de clima temperado. Quatro tratamentos de manejo de solo foram avaliados em condições de terras baixas, em áreas de arroz, para implantação da cultura da soja: camalhão escarificado (CE), onde implantou-se a soja no sistema sulco-camalhão construído em solo previamente escarificado; sulco-camalhão (C), com plantio de soja em camalhão construído em solo não escarificado; escarificado (E) com plantio de soja em solo escarificado mas sem sulco-camalhões; e convencional (Convencional), com plantio de soja em sistema usual, sem camalhão ou escarificação do solo. Foram avaliados a área foliar, altura, diâmetro do caule e conteúdo de água das plantas. As avaliações foram efetuadas quinzenalmente da emergência à maturação dos grãos. A utilização de camalhão e escarificação favorecem o crescimento e desenvolvimento da planta, diminuindo o estresse causado pelo encharcamento do solo e permitindo melhor ambiente para o desenvolvimento do sistema radicular das plantas

Efeito da época de preparo do camalhão no desenvolvimento de plantas de soja em terras baixas/ Effect of the time of preparing the camalhão on the development of soybean plants

Objetivou-se com o presente estudo avaliar o estabelecimento e o desempenho de crescimento de plantas de soja, quando cultivadas em sistema de sulco-camalhão, preparado antecipadamente ou na hora da semeadura, em terras baixas de clima temperado. O experimento foi conduzido a campo, na área experimental da Embrapa Clima Temperado, Estação Experimental Terras Baixas, no município do Capão do Leão-RS, em delineamento experimental em blocos casualizados, com parcelas dispostas em faixas, com seis repetições. Os tratamentos constaram da época de preparo do camalhão. Os camalhões antecipados (tratamento 1 - TCA), foram construídos em abril de 2018, com camalhoeira, sendo imediatamente semeado a lanço o azevém cv. BRS Ponteio, na densidade de 15 kg ha?1 de sementes. Previamente a semeadura da soja, a área foi dessecada com 1440 ge.a. ha?1 de glyphosate, e a semeadura foi realizada com semeadeira Vence Tudo. Os camalhões confeccionados concomitantemente ao plantio (tratamento 2 - TCFH), foram feitos pela própria semeadeira, que possuía pé de pato específicos para tal operação. Foram avaliadas a área foliar, diâmetro do caule, altura de planta e conteúdo de água das plantas de soja em função dos dias após emergência (DAE). As avaliações foram efetuadas quinzenalmente da emergência à maturação dos grãos. A soja semeada no camalhão feito concomitante à semeadura apresentou melhor desenvolvimento vegetativo, comparativamente ao plantio sobre sulco-camalhão antecipado, principalmente aumentando a área foliar e diâmetro de caule. Supõe-se que condições diferenciais de adensamento e fertilidade do solo e consequente desenvolvimento radicular possam ter contribuído para esse resultado, mas isso deve ser investigado em maiores detalhes futuramente para confirmar ou refutar esses resultados

A change in the optical polarization associated with a gamma-ray flare in the blazar 3C 279

It is widely accepted that strong and variable radiation detected over all accessible energy bands in a number of active galaxies arises from a relativistic, Doppler-boosted jet pointing close to our line of sight. The size of the emitting zone and the location of this region relative to the central supermassive black hole are, however, poorly known, with estimates ranging from light-hours to a light-year or more. Here we report the coincidence of a gamma-ray flare with a dramatic change of optical polarization angle. This provides evidence for co-spatiality of optical and gamma-ray emission regions and indicates a highly ordered jet magnetic field. The results also require a non-axisymmetric structure of the emission zone, implying a curved trajectory for the emitting material within the jet, with the dissipation region located at a considerable distance from the black hole, at about 10^5 gravitational radii.Comment: Published in Nature issued on 18 February 2010. Corresponding authors: Masaaki Hayashida and Greg Madejsk

Textbook outcome in urgent early cholecystectomy for acute calculous cholecystitis: results post hoc of the S.P.Ri.M.A.C.C study

Introduction: A textbook outcome patient is one in which the operative course passes uneventful, without complications, readmission or mortality. There is a lack of publications in terms of TO on acute cholecystitis. Objetive: The objective of this study is to analyze the achievement of TO in patients with urgent early cholecystectomy (UEC) for Acute Cholecystitis. and to identify which factors are related to achieving TO. Materials and methods: This is a post hoc study of the SPRiMACC study. It ́s a prospective multicenter observational study run by WSES. The criteria to define TO in urgent early cholecystectomy (TOUEC) were no 30-day mortality, no 30-day postoperative complications, no readmission within 30 days, and hospital stay ≤ 7 days (75th percentile), and full laparoscopic surgery. Patients who met all these conditions were taken as presenting a TOUEC. Outcomes: 1246 urgent early cholecystectomies for ACC were included. In all, 789 patients (63.3%) achieved all TOUEC parameters, while 457 (36.6%) failed to achieve one or more parameters and were considered non-TOUEC. The patients who achieved TOUEC were younger had significantly lower scores on all the risk scales analyzed. In the serological tests, TOUEC patients had lower values for in a lot of variables than non-TOUEC patients. The TOUEC group had lower rates of complicated cholecystitis. Considering operative time, a shorter duration was also associated with a higher probability of reaching TOUEC. Conclusion: Knowledge of the factors that influence the TOUEC can allow us to improve our results in terms of textbook outcome

Colorectal Cancer Stage at Diagnosis Before vs During the COVID-19 Pandemic in Italy

IMPORTANCE Delays in screening programs and the reluctance of patients to seek medical attention because of the outbreak of SARS-CoV-2 could be associated with the risk of more advanced colorectal cancers at diagnosis. OBJECTIVE To evaluate whether the SARS-CoV-2 pandemic was associated with more advanced oncologic stage and change in clinical presentation for patients with colorectal cancer. DESIGN, SETTING, AND PARTICIPANTS This retrospective, multicenter cohort study included all 17 938 adult patients who underwent surgery for colorectal cancer from March 1, 2020, to December 31, 2021 (pandemic period), and from January 1, 2018, to February 29, 2020 (prepandemic period), in 81 participating centers in Italy, including tertiary centers and community hospitals. Follow-up was 30 days from surgery. EXPOSURES Any type of surgical procedure for colorectal cancer, including explorative surgery, palliative procedures, and atypical or segmental resections. MAIN OUTCOMES AND MEASURES The primary outcome was advanced stage of colorectal cancer at diagnosis. Secondary outcomes were distant metastasis, T4 stage, aggressive biology (defined as cancer with at least 1 of the following characteristics: signet ring cells, mucinous tumor, budding, lymphovascular invasion, perineural invasion, and lymphangitis), stenotic lesion, emergency surgery, and palliative surgery. The independent association between the pandemic period and the outcomes was assessed using multivariate random-effects logistic regression, with hospital as the cluster variable. RESULTS A total of 17 938 patients (10 007 men [55.8%]; mean [SD] age, 70.6 [12.2] years) underwent surgery for colorectal cancer: 7796 (43.5%) during the pandemic period and 10 142 (56.5%) during the prepandemic period. Logistic regression indicated that the pandemic period was significantly associated with an increased rate of advanced-stage colorectal cancer (odds ratio [OR], 1.07; 95%CI, 1.01-1.13; P = .03), aggressive biology (OR, 1.32; 95%CI, 1.15-1.53; P < .001), and stenotic lesions (OR, 1.15; 95%CI, 1.01-1.31; P = .03). CONCLUSIONS AND RELEVANCE This cohort study suggests a significant association between the SARS-CoV-2 pandemic and the risk of a more advanced oncologic stage at diagnosis among patients undergoing surgery for colorectal cancer and might indicate a potential reduction of survival for these patients

Large scale multifactorial likelihood quantitative analysis of BRCA1 and BRCA2 variants: An ENIGMA resource to support clinical variant classification

The multifactorial likelihood analysis method has demonstrated utility for quantitative assessment of variant pathogenicity for multiple cancer syndrome genes. Independent data types currently incorporated in the model for assessing BRCA1 and BRCA2 variants include clinically calibrated prior probability of pathogenicity based on variant location and bioinformatic prediction of variant effect, co-segregation, family cancer history profile, co-occurrence with a pathogenic variant in the same gene, breast tumor pathology, and case-control information. Research and clinical data for multifactorial likelihood analysis were collated for 1,395 BRCA1/2 predominantly intronic and missense variants, enabling classification based on posterior probability of pathogenicity for 734 variants: 447 variants were classified as (likely) benign, and 94 as (likely) pathogenic; and 248 classifications were new or considerably altered relative to ClinVar submissions. Classifications were compared with information not yet included in the likelihood model, and evidence strengths aligned to those recommended for ACMG/AMP classification codes. Altered mRNA splicing or function relative to known nonpathogenic variant controls were moderately to strongly predictive of variant pathogenicity. Variant absence in population datasets provided supporting evidence for variant pathogenicity. These findings have direct relevance for BRCA1 and BRCA2 variant evaluation, and justify the need for gene-specific calibration of evidence types used for variant classification

Goodbye Hartmann trial: a prospective, international, multicenter, observational study on the current use of a surgical procedure developed a century ago

Background: Literature suggests colonic resection and primary anastomosis (RPA) instead of Hartmann's procedure (HP) for the treatment of left-sided colonic emergencies. We aim to evaluate the surgical options globally used to treat patients with acute left-sided colonic emergencies and the factors that leading to the choice of treatment, comparing HP and RPA. Methods: This is a prospective, international, multicenter, observational study registered on ClinicalTrials.gov. A total 1215 patients with left-sided colonic emergencies who required surgery were included from 204 centers during the period of March 1, 2020, to May 31, 2020. with a 1-year follow-up. Results: 564 patients (43.1%) were females. The mean age was 65.9 ± 15.6 years. HP was performed in 697 (57.3%) patients and RPA in 384 (31.6%) cases. Complicated acute diverticulitis was the most common cause of left-sided colonic emergencies (40.2%), followed by colorectal malignancy (36.6%). Severe complications (Clavien-Dindo ≥ 3b) were higher in the HP group (P < 0.001). 30-day mortality was higher in HP patients (13.7%), especially in case of bowel perforation and diffused peritonitis. 1-year follow-up showed no differences on ostomy reversal rate between HP and RPA. (P = 0.127). A backward likelihood logistic regression model showed that RPA was preferred in younger patients, having low ASA score (≤ 3), in case of large bowel obstruction, absence of colonic ischemia, longer time from admission to surgery, operating early at the day working hours, by a surgeon who performed more than 50 colorectal resections. Conclusions: After 100 years since the first Hartmann's procedure, HP remains the most common treatment for left-sided colorectal emergencies. Treatment's choice depends on patient characteristics, the time of surgery and the experience of the surgeon. RPA should be considered as the gold standard for surgery, with HP being an exception