Secure Connectivity Through Key Predistribution Under Jamming Attacks In Ad Hoc and Sensor Networks

Wireless ad hoc and sensor networks have received attention from research communities over the last several years. The ability to operate without a fixed infrastructure is suitable for a wide range of applications which in many cases require protection from security attacks. One of the first steps to provide security is to distribute cryptographic keys among nodes for bootstrapping security. The unique characteristics of ad hoc networks create a challenge in distributing keys among limited resource devices. In this dissertation we study the impact on secure connectivity achieved through key pre-distribution, of jamming attacks which form one of the easiest but efficient means for disruption of network connectivity. In response to jamming, networks can undertake different coping strategies (e.g., using power adaptation, spatial retreats, and directional antennas). Such coping techniques have impact in terms of the changing the initial secure connectivity created by secure links through key predistribution. The objective is to explore how whether predistribution techniques are robust enough for ad hoc/sensor networks that employ various techniques to cope with jamming attacks by taking into account challenges that arise with key predistribution when strategies for coping with jamming attacks are employed. In the first part of this dissertation we propose a hybrid key predistribution scheme that supports ad hoc/sensor networks that use mobility to cope with jamming attacks. In the presence of jamming attacks, this hybrid scheme provides high key connectivity while reducing the number of isolated nodes (after coping with jamming using spatial retreats). The hybrid scheme is a combination of random key predistribution and deployment-based key predistribution schemes that have complementary useful features for secure connectivity. In the second part we study performance of these key predistribution schemes under other jamming coping techniques namely power adaptation and directional antennas. We show that the combination of the hybrid key predistribution and coping techniques can help networks in maintaining secure connectivity even under jamming attacks

Partial characterization of dinoflagellate chromosomal proteins

Dinoflagellate chromosomal proteins were analyzed by acrylamide gel electrophoresis. The electrophoretic pattern of acid-insoluble chromosomal proteins from Gyrodinium cohnii in sodium dodecylsulfate gels is less heterogeneous than that of corn, and is characterized by a paucity of bands representing molecular weights below 43 000. Acrylamide gel electrophoresis of G. cohnii and Peridinium trochoideum acid-soluble chromosomal proteins in urea at pH 3.2 gives a banding pattern quite different than that of typical histones. Acid-soluble protein from chromatin prepared by the two different methods and from both organisms migrates as one predominant band with a mobility slightly less than that of Histone IV from corn. Its molecular weight, estimated by sodium dodecylsulfate gel electrophoresis, is about 16000. It is a basic protein (basic/acidic amino acids 1.3) but differs from most histones in that it contains both cysteine and aromatic amino acids and somewhat lower levels of basic amino acids (18 mole % compared with 22 to 30% for histones). In addition, the major acid-soluble component is present in chromatin from log-phase cells but absent in chromatin from stationary-phase cells. For these reasons, the major acid-soluble protein is probably not a histone.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/22353/1/0000799.pd

Histone H1 Subtypes Differentially Modulate Chromatin Condensation without Preventing ATP-Dependent Remodeling by SWI/SNF or NURF

Although ubiquitously present in chromatin, the function of the linker histone subtypes is partly unknown and contradictory studies on their properties have been published. To explore whether the various H1 subtypes have a differential role in the organization and dynamics of chromatin we have incorporated all of the somatic human H1 subtypes into minichromosomes and compared their influence on nucleosome spacing, chromatin compaction and ATP-dependent remodeling. H1 subtypes exhibit different affinities for chromatin and different abilities to promote chromatin condensation, as studied with the Atomic Force Microscope. According to this criterion, H1 subtypes can be classified as weak condensers (H1.1 and H1.2), intermediate condensers (H1.3) and strong condensers (H1.0, H1.4, H1.5 and H1x). The variable C-terminal domain is required for nucleosome spacing by H1.4 and is likely responsible for the chromatin condensation properties of the various subtypes, as shown using chimeras between H1.4 and H1.2. In contrast to previous reports with isolated nucleosomes or linear nucleosomal arrays, linker histones at a ratio of one per nucleosome do not preclude remodeling of minichromosomes by yeast SWI/SNF or Drosophila NURF. We hypothesize that the linker histone subtypes are differential organizers of chromatin, rather than general repressors

Connective tissue activation

Connective tissue activating peptide-III (CTAP-III) isolated from human platelets is a potent mitogen for human connective tissue cells in culture in addition to stimulating glycosaminoglycan synthesis, glucose consumption, and lactate formation. The amino acid composition of apparently homogeneous CTAP-III was determined, confirming the presence of two disulfide links and providing a calculated molecular weight of 11,633 daltons. Comparison of the mitogenic activity of serum and plasma-serum suggests that CTAP-III is a major mitogenic component of human serum. Seventeen strains of human connective tissue cells (synovial, cartilage, dermal and thyroid) incorporated [ 3 H]-thymidine at up to 30 times control at levels under the influence of microgram quantities of CTAP-III and caused detectable increases in thymidine incorporation at levels as low as 10–29 ng/ml. Prostaglandin E 1 (0.01 Μg/ml) and dibutyryl cyclic AMP (25 Μg/ml) potentiated the glycosaminoglycan stimulating effect of CTAP-III, but not its mitogenic effect. Cycloheximide and actinomycin D blocked the biologic actions of CTAP-III. Cortisol and penicillamine had little effect on the mitogenic activity of CTAP-III, whereas antirheumatic agents such as acetylsalicylic acid and phenylbutazone opposed the mitogenic activity when added to cultures at clinically relevant concentrations. A weak antiheparin factor secreted by platelets, low affinity platelet factor 4 (LA-PF 4 ), was shown to be similar to CTAP-III in biologic actions, electrophoretic mobility, amino acid composition, and antigenic determinants.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/37739/1/1780220308_ftp.pd

Acetylation of core histones in response to HDAC inhibitors is diminished in mitotic HeLa cells

Histone acetylation is a key modification that regulates chromatin accessibility. Here we show that treatment with butyrate or other histone deacetylase (HDAC) inhibitors does not induce histone hyperacetylation in metaphase-arrested HeLa cells. When compared to similarly treated interphase cells, acetylation levels are significantly decreased in all four core histones and at all individual sites examined. However, the extent of the decrease varies, ranging from only slight reduction at H3K23 and H4K12 to no acetylation at H3K27 and barely detectable acetylation at H4K16. Our results show that the bulk effect is not due to increased or butyrate-insensitive HDAC activity, though these factors may play a role with some individual sites. We conclude that the lack of histone acetylation during mitosis is primarily due to changes in histone acetyltransferases (HATs) or changes in chromatin. The effects of protein phosphatase inhibitors on histone acetylation in cell lysates suggest that the reduced ability of histones to become acetylated in mitotic cells depends on protein phosphorylation