Ranking and clustering of nodes in networks with smart teleportation

Random teleportation is a necessary evil for ranking and clustering directed networks based on random walks. Teleportation enables ergodic solutions, but the solutions must necessarily depend on the exact implementation and parametrization of the teleportation. For example, in the commonly used PageRank algorithm, the teleportation rate must trade off a heavily biased solution with a uniform solution. Here we show that teleportation to links rather than nodes enables a much smoother trade-off and effectively more robust results. We also show that, by not recording the teleportation steps of the random walker, we can further reduce the effect of teleportation with dramatic effects on clustering.Comment: 10 pages, 7 figure

Electrical neuroimaging of music processing reveals mid-latency changes with level of musical expertise

This original research focused on the effect of training intensity on cerebral and behavioral processing of complex music using high-density event-related potential (ERP) approaches. Recently we have been able to show progressive changes with training in grey and white matter and higher order brain functioning using (f)MRI ((functional) Magnetic Resonance Imaging), as well as changes in musical and general cognitive functioning. The current study investigated the same population of non-musicians, amateur pianists and expert pianists using spatio-temporal ERP analysis, by means of microstate analysis, and ERP source imaging. The stimuli consisted of complex musical compositions containing three levels of transgression of musical syntax at closure that participants appraised. ERP waveforms, microstates and underlying brain sources revealed gradual differences according to expertise in a 300-500 ms window after the onset of the terminal chords of the pieces. Within this time-window, processing seemed to concern context-based memory updating, indicated by a P3b-like component or microstate for which underlying sources were localized in right middle temporal gyrus, anterior cingulate and right parahippocampal areas. Given that the 3 expertise groups were carefully matched for demographic factors, these results provide evidence of the progressive impact of training on brain and behavior

Short communication: Influence of composite casein genotypes on additive genetic variation of milk production traits and coagulation properties in Holstein-Friesian cows

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Increases in sampling support the southern Gondwanan hypothesis for the origin of dinosaurs

Dinosaurs were ubiquitous in terrestrial ecosystems through most of the Mesozoic and are still diversely represented in the modern fauna in the form of birds. Recent efforts to better understand the origins of the group have resulted in the discovery of many new species of early dinosaurs and their closest relatives (dinosauromorphs). In addition, recent re-examinations of early dinosaur phylogeny have highlighted uncertainties regarding the interrelationships of the main dinosaur lineages (Sauropodomorpha, Theropoda and Ornithischia), and questioned the traditional hypothesis that the group originated in South Gondwana and gradually dispersed over Pangaea. Here, we use a historical approach to examine the impact of new fossil discoveries and changing phylogenetic hypotheses on biogeographic scenarios for dinosaur origins over 20 years of research time, and analyse the results in the light of different fossil record sampling regimes. Our results consistently optimize South Gondwana as the ancestral area for Dinosauria, as well as for more inclusive clades including Dinosauromorpha, and show that this hypothesis is robust to increased taxonomic and geographic sampling and divergent phylogenetic results. Our results do not find any support for the recently proposed Laurasian origin of dinosaurs and suggest that a southern Gondwanan origin is by far the most plausible given our current knowledge of the diversity of early dinosaurs and non-dinosaurian dinosauromorphs

O café na Região Metropolitana de Campinas.

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Multifactorial causes of chronic mortality in juvenile sturgeon (Huso huso)

This investigation focused on an episode of chronic mortality observed in juvenile Huso huso sturgeons. The examined subjects underwent pathological, microbiological, molecular, and chemical investigations. Grossly severe body shape deformities, epaxial muscle softening, and multifocal ulcerative dermatitis were the main observed findings. The more constant histopathologic findings were moderate to severe rarefaction and disorganization of the lymphohematopoietic lymphoid tissues, myofiber degeneration, atrophy and interstitial edema of skeletal epaxial muscles, and degeneration and atrophy of the gangliar neurons close to the myofibers. Chemical investigations showed a lower selenium concentration in affected animals, suggesting nutritional myopathy. Other manifestations were nephrocalcinosis and splenic vessel wall hyalinosis. Septicemia due to bacteria such as Aeromonas veronii, Shewanella putrefaciens, Citrobacter freundii, Chryseobacterium sp., and pigmented hyphae were found. No major sturgeon viral pathogens were detected by classical methods. Next-generation sequencing (NGS) analysis confirmed the absence of viral pathogens, with the exception of herpesvirus, at the order level; also, the presence of Aeromonas veronii and Shewanella putrefaciens was confirmed at the family level by the metagenomic classification of NGS data. In the absence of a primary yet undetected biological cause, it is supposed that environmental stressors, including nutritional imbalances, may have led to immune system impairment, facilitating the entry of opportunistic bacteria and mycotic hyphae

Assessing bias in aerial surveys for cetaceans: Results from experiments conducted with the franciscana dolphin

Line transect aerial surveys are widely used for estimating abundance of biological populations, including threatened species. However, estimates obtained with data collected from aircraft are often underestimated because of visibility bias and bias in estimating group sizes from a fast-moving platform. An assessment of multiple sources of bias in aerial surveys were carried out in Brazilian coastal waters by experiments on multiple survey platforms (i.e., boat, airplane and helicopter). These studies focused on evaluating visibility bias (perception and availability bias) and potential differences in the estimation of group sizes from different types of platforms used in franciscana (Pontoporia blainvillei) abundance surveys. The ultimate goal was to develop correction factors to improve accuracy of estimates of density and population size for this threatened dolphin. Estimates of density and group sizes computed from boats were assumed to be unbiased and were compared to estimates of these quantities obtained from an airplane in the same area and period. In addition, helicopter surveys were conducted in two areas where water turbidity differed (clear vs. murky waters) to determine surfacing-diving intervals of franciscana groups and to estimate availability for aerial platforms. Abundance computed from the aerial survey data underestimated the true abundance by about 4-5 times, with ~70% of the total bias resulting from visibility bias (~80% from availability bias and ~20% from perception bias) and ~30% from bias in estimates of group size. The use of multiple survey platforms in contrasting habitats provided the opportunity to compute correction factors that can be used to refine range wide abundance estimates of the threatened franciscana given certain assumptions are met. Visibility bias and group size bias were substantial and clearly indicate the importance for accounting for such correction factors to produce unequivocal population assessment based on aerial survey data.Fil: Sucunza, Federico. Grupo de Estudio de Mamiferos Aquaticos de Rio Grande Do Sul.; Brasil. Universidade Federal de Juiz de Fora; Brasil. Instituto Aqualie; BrasilFil: Danilewicz, Daniel. Instituto Aqualie; Brasil. Grupo de Estudio de Mamiferos Aquaticos de Rio Grande Do Sul.; Brasil. Universidade Federal de Juiz de Fora; BrasilFil: Andriolo, Artur. Instituto Aqualie; Brasil. Universidade Federal de Juiz de Fora; BrasilFil: de Castro, Franciele R.. Instituto Aqualie; BrasilFil: Cremer, Marta. Universidade da Região de Joinville; BrasilFil: Denuncio, Pablo Ezequiel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Marinas y Costeras. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Marinas y Costeras; ArgentinaFil: Ferreira, Emanuel. Associação R3 Animal; BrasilFil: Flores, Paulo A. C.. Instituto Chico Mendes para a Conservação da Biodiversidade; BrasilFil: Ott, Paulo H.. Universidade Estadual do Rio Grande do Sul; Brasil. Grupo de Estudio de Mamiferos Aquaticos de Rio Grande Do Sul.; BrasilFil: Perez, Martin S.. Grupo de Estudio de Mamiferos Aquaticos de Rio Grande Do Sul.; BrasilFil: Pretto, Dan. Instituto Chico Mendes Para A Conservação Da Biodiversidade; BrasilFil: Sartori, Camila M.. Universidade da Região de Joinville; BrasilFil: Secchi, Eduardo Resende. Universidade Federal do Rio Grande; BrasilFil: Zerbini, Alexandre. Marine Ecology And Telemetry Research; Estados Unidos. Cascadia Research Collective; Estados Unidos. Instituto Aqualie; Brasil. Universidade Federal de Juiz de Fora; Brasil. The George Washington University; Estados Unido