Development of VHDL Code for the DAQ and Monitoring Boards of the Velo Subdtector of the LHCb Experiment

The Velo subdetector is the main tracking and vertex finding detector based on silicon strip sensors. The monitoring boards are the 'temperature board' and the 'low voltage interlock board' aimed at measuring temperature of the sensors and protect them against overheating. The main development consists on an SPI slave to interface the FPGA user registers to the Atmel processor on the ELMB mezzanine. For the DAQ board ('TELLI') the online data algorithms are the pedestal tracking and subtraction, cross-talk filtration, correlated noise suppression, reordering of data, cluster finding and formatting

Fluorescent non-toxic bait as a new method for black rat (Rattus rattus) monitoring

The detection of synathropic rodents may be difficult since they are animals with nocturnal activity. Methods of their detection and monitoring rely mostly on indirect signs of their activity such as the presence of faeces, urine, consumed foods and damaged materials. Our experimental hypothesis was that the production of fluorescent faeces - following consumption of fluorescent bait - may be used for rodent monitoring. For this purpose we studied the production of fluorescent faeces, temporal dynamics and detectability in wild black rat (Rattus rattus). Wild black rats were individually housed in experimental cages with the wire-mesh grid floor and faeces were collected in short-time intervals. The peak of fluorescent activity in faeces was detected 10-20 hours after bait ingestion. We found that there is only relatively short delay between bait consumption and defecation and fluorescent faeces are easily detectable at distance using an ultraviolet hand lamp. Thus, this method can contribute to effective monitoring of rodent pests.Keywords: Rattus rattus, Fluorescent bait, Monitoring, Rodent contro

The melanoma-associated antigen 1 (MAGEA1) protein stimulates the E3 ubiquitin-ligase activity of TRIM31 within a TRIM31-MAGEA1-NSE4 complex

The MAGE (Melanoma-associated antigen) protein family members are structurally related to each other by a MAGEhomology domain comprised of 2 winged helix motifs WH/A and WH/B. This family specifically evolved in placental mammals although single homologs designated NSE3 (non-SMC element) exist in most eukaryotes. NSE3, together with its partner proteins NSE1 and NSE4 form a tight subcomplex of the structural maintenance of chromosomes SMC5–6 complex. Previously, we showed that interactions of the WH/B motif of the MAGE proteins with their NSE4/EID partners are evolutionarily conserved (including the MAGEA1-NSE4 interaction). In contrast, the interaction of the WH/A motif of NSE3 with NSE1 diverged in the MAGE paralogs. We hypothesized that the MAGE paralogs acquired new RING-finger containing partners through their evolution and form MAGE complexes reminiscent of NSE1-NSE3-NSE4 trimers. In this work, we employed the yeast 2-hybrid system to screen a human RING-finger protein library against several MAGE baits. We identified a number of potential MAGE-RING interactions and confirmed several of them (MDM4, PCGF6, RNF166, TRAF6, TRIM8, TRIM31, TRIM41) in co-immunoprecipitation experiments. Among these MAGE-RING pairs, we chose to examine MAGEA1-TRIM31 in detail and showed that both WH/A and WH/B motifs of MAGEA1 bind to the coiled-coil domain of TRIM31 and that MAGEA1 interaction stimulates TRIM31 ubiquitin-ligase activity. In addition, TRIM31 directly binds to NSE4, suggesting the existence of a TRIM31-MAGEA1-NSE4 complex reminiscent of the NSE1-NSE3-NSE4 trimer. These results suggest that MAGEA1 functions as a co-factor of TRIM31 ubiquitin-ligase and that the TRIM31-MAGEA1-NSE4 complex may have evolved from an ancestral NSE1-NSE3-NSE4 complex

NMR Time Reversal Experiments in Highly Polarised Liquid 3He-4He Mixtures

Long-range magnetic interactions in highly magnetised liquids (laser-polarised 3He-4He dilute mixtures at 1 K in our experiment) introduce a significant non-linear and non-local contribution to the evolution of nuclear magnetisation that leads to instabilities during free precession. We recently demonstrated that a multi-echo NMR sequence, based on the magic sandwich pulse scheme developed for solid-state NMR, can be used to stabilise the magnetisation against the effect of distant dipolar fields. Here, we report investigations of echo attenuation in an applied field gradient that show the potential of this NMR sequence for spin diffusion measurements at high magnetisation densities.Comment: Accepted for publication in the Journal of Low Temperature Physic

An NMR study on internal browning in pears

Internal browning in pears (Pyrus communis L. cv. Blanquilla) has been studied by NMR and MRI in order to develop a non-destructive procedure for on-line disorder identification. For NMR relaxometry, disordered tissue shows higher transverse relaxation rates compared to sound tissue, especially at higher magnetic field strength and for long pulse spacing. Membrane alteration and therefore tissue disintegration, as well as water evaporation, appear to be the main causes of this response. Correlation between relaxation times and diffusion showed that the proton pools in disordered tissue are grouped into a smaller number of populations compared to sound tissue, also highlighting cell decompartmentation in disordered tissue. At a macroscopic level, fast low angle shot MR images, effective transverse relaxation-weighted (TR 11 ms and TE 3.7 ms) and proton density-weighted (TR 7.6 ms and TE 2.5 ms), were acquired for pears at a rate of 54 mm/s. Images have been discriminated for internal breakdown according to histogram characteristics. Up to 94 and 96% of pears, respectively, were correctly classified in the former and the latter type of images. In this study a minimum value of 12% of tissue affected by breakdown was always clearly identifie

Measuring surface-area-to-volume ratios in soft porous materials using laser-polarized xenon interphase exchange NMR

We demonstrate a minimally invasive nuclear magnetic resonance (NMR) technique that enables determination of the surface-area-to-volume ratio (S/V) of soft porous materials from measurements of the diffusive exchange of laser-polarized 129Xe between gas in the pore space and 129Xe dissolved in the solid phase. We apply this NMR technique to porous polymer samples and find approximate agreement with destructive stereological measurements of S/V obtained with optical confocal microscopy. Potential applications of laser-polarized xenon interphase exchange NMR include measurements of in vivo lung function in humans and characterization of gas chromatography columns.Comment: 14 pages of text, 4 figure

The effect of gelatine packaging film containing a Spirulina platensis protein concentrate on atlantic mackerel shelf life

The use of packaging films containing natural preservative compounds attracts great attention for the quality improvement of seafood. Microalga spirulina (Spirulina platensis) represents a potential source of high added-value and preservative biocompounds. The goal of this study was to enhance the quality of refrigerated Atlantic mackerel (Scomber scombrus) by including a protein concentrate (PC) of spirulina in a gelatine-based film. Quality changes in fish muscle were monitored by microbial and chemical analyses throughout an 11-day refrigerated storage (4 °C). As a result of the presence of spirulina PC in the film, an antimicrobial effect (p 0.05) was concluded for Enterobacteriaceae, proteolytics and lipolytics counts. Furthermore, a lower (p < 0.05) formation of trimethylamine and free fatty acids was detected. Lipid oxidation, measured by fluorescent compounds formation, also exhibited lower average values in fish corresponding to the batch containing spirulina concentrate. The preservative effects observed can be explained on the basis of the presence of antimicrobial and antioxidant compounds in the microalga concentrate. It is proposed that the current packaging system may constitute a novel and promising strategy to enhance the quality of commercial refrigerated fatty fish.Fil: Stejskal, Nadia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Miranda, José M.. Universidad de Santiago de Compostela; EspañaFil: Martucci, Josefa Fabiana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Ruseckaite, Roxana Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Aubourg, Santiago P.. Consejo Superior de Investigaciones Científicas; EspañaFil: Barros Velázquez, Jorge. Universidad de Santiago de Compostela; Españ

Formation of convective cells in the scrape-off layer of the CASTOR tokamak

Understanding of the scrape-off layer (SOL) physics in tokamaks requires diagnostics with sufficient temporal and spatial resolution. This contribution describes results of experiments performed in the SOL of the CASTOR tokamak (R=40 cm, a = 6 cm) by means of a ring of 124 Langmuir probes surrounding the whole poloidal cross section. The individual probes measure either the ion saturation current of the floating potential with the spatial resolution up to 3 mm. Experiments are performed in a particular magnetic configuration, characterized by a long parallel connection length in the SOL, L_par ~q2piR. We report on measurements in discharges, where the edge electric field is modified by inserting a biased electrode into the edge plasma. In particular, a complex picture is observed, if the biased electrode is located inside the SOL. The poloidal distribution of the floating potential appears to be strongly non-uniform at biasing. The peaks of potential are observed at particular poloidal angles. This is interpreted as formation of a biased flux tube, which emanates from the electrode along the magnetic field lines and snakes q times around the torus. The resulting electric field in the SOL is 2-dimensional, having the radial as well as the poloidal component. It is demonstrated that the poloidal electric field E_pol convects the edge plasma radially due to the E_pol x B_T drift either inward or outward depending on its sign. The convective particle flux is by two orders of magnitude larger than the fluctuation-induced one and consequently dominates.Comment: 12th International Congress on Plasma Physics, 25-29 October 2004, Nice (France