Effect of Heat and Drought Stress on Sorghum (Sorghum Bicolor).I.Panicle Development and Leaf Appearance

Seven sorghum lines, flowering from 50 to 87 days after sowing, were subjected to early drought stress, late stress, and both early and late stress in the field during the dry season in India. Panicle initiation was delayed by 2–25 days and flowering by 1–59 days by the drought stress treatments, the greatest effect being in the treatment subjected to both early and late stress. Stress increased the period between panicle initiation and flowering by retarding the rate of panicle development; when stress was severe panicle development stopped. Upon relief of stress following irrigation, panicle development resumed at rates comparable to those in a fully irrigated control. The rate of leaf appearance was affected in a similar manner to panicle development soon after water was withheld. Rate of leaf appearance and panicle development decreased as pre-dawn leaf water potential decreased and ceased at water potentials of −0.55 and −0.7 MPa, respectivel

Simultaneous Embeddability of Two Partitions

We study the simultaneous embeddability of a pair of partitions of the same underlying set into disjoint blocks. Each element of the set is mapped to a point in the plane and each block of either of the two partitions is mapped to a region that contains exactly those points that belong to the elements in the block and that is bounded by a simple closed curve. We establish three main classes of simultaneous embeddability (weak, strong, and full embeddability) that differ by increasingly strict well-formedness conditions on how different block regions are allowed to intersect. We show that these simultaneous embeddability classes are closely related to different planarity concepts of hypergraphs. For each embeddability class we give a full characterization. We show that (i) every pair of partitions has a weak simultaneous embedding, (ii) it is NP-complete to decide the existence of a strong simultaneous embedding, and (iii) the existence of a full simultaneous embedding can be tested in linear time.Comment: 17 pages, 7 figures, extended version of a paper to appear at GD 201

The NH2D/NH3 ratio toward pre-protostellar cores around the UCHII region in IRAS 20293+3952

The deuterium fractionation, Dfrac, has been proposed as an evolutionary indicator in pre-protostellar and protostellar cores of low-mass star-forming regions. We investigate Dfrac, with high angular resolution, in the cluster environment surrounding the UCHII region IRAS 20293+3952. We performed high angular resolution observations with the IRAM Plateau de Bure Interferometer (PdBI) of the ortho-NH2D 1_{11}-1_{01} line at 85.926 GHz and compared them with previously reported VLA NH3 data. We detected strong NH2D emission toward the pre-protostellar cores identified in NH3 and dust emission, all located in the vicinity of the UCHII region IRAS 20293+3952. We found high values of Dfrac~0.1-0.8 in all the pre-protostellar cores and low values, Dfrac<0.1, associated with young stellar objects. The high values of Dfrac in pre-protostellar cores could be indicative of evolution, although outflow interactions and UV radiation could also play a role.Comment: 5 pages, 3 figures. Accepted for publication in Astronomy and Astrophysics Letter

N2H+ depletion in the massive protostellar cluster AFGL 5142

We aim at investigating with high angular resolution the NH3/N2H+ ratio toward the high-mass star-forming region AFGL 5142 in order to study whether this ratio behaves similarly to the low-mass case, for which the ratio decreases from starless cores to cores associated with YSOs. CARMA was used to observe the 3.2 mm continuum and N2H+(1-0) emission. We used NH3(1,1) and (2,2), HCO+(1-0) and H13CO+(1-0) data from the literature and we performed a time-dependent chemical modeling of the region. The 3.2 mm continuum emission reveals a dust condensation of ~23 Msun associated with the massive YSOs, deeply embedded in the strongest NH3 core (hereafter central core). The N2H+ emission reveals two main cores, the western and eastern core, located to the west and to the east of the mm condensation, and surrounded by a more extended and complex structure of ~0.5 pc. Toward the central core the N2H+ emission drops significantly, indicating a clear chemical differentiation in the region. We found low values of the NH3/N2H+ ratio ~50-100 toward the western/eastern cores, and high values up to 1000 in the central core. The chemical model indicates that density, and in particular temperature, are key parameters in determining the NH3/N2H+ ratio. The high density and temperature reached in the central core allow molecules like CO to evaporate from grain mantles. The CO desorption causes a significant destruction of N2H+, favoring the formation of HCO+. This result is supported by our observations, which show that N2H+ and HCO+ are anticorrelated in the central core. The observed values of the NH3/N2H+ ratio in the central core can be reproduced by our model for times t~4.5-5.3x10^5 yr (central) and t~10^4-3x10^6 yr (western/eastern). The NH3/N2H+ ratio in AFGL 5142 does not follow the same trend as in regions of low-mass star formation mainly due to the high temperature reached in hot cores.Comment: Accepted for publication in A&A. 14 pages, 9 Figures, 5 Table

Temperature and kinematics of protoclusters with intermediate and high-mass stars: the case of IRAS 05345+3157

We have mapped at small spatial scales the temperature and the velocity field in the protocluster associated with IRAS 05345+3157, which contains both intermediate-/high-mass protostellar candidates and starless condensations, and is thus an excellent location to investigate the role of massive protostars on protocluster evolution. We observed the ammonia (1,1) and (2,2) inversion transitions with the VLA. Ammonia is the best thermometer for dense and cold gas, and the observed transitions have critical densities able to trace the kinematics of the intracluster gaseous medium. The ammonia emission is extended and distributed in two filamentary structures. The starless condensations are colder than the star-forming cores, but the gas temperature across the whole protocluster is higher (by a factor of ~1.3-1.5) than that measured typically in both infrared dark clouds and low-mass protoclusters. The non-thermal contribution to the observed line broadening is at least a factor of 2 larger than the expected thermal broadening even in starless condensations, contrary to the close-to-thermal line widths measured in low-mass quiescent dense cores. The NH3-to-N2H+ abundance ratio is greatly enhanced (a factor of 10) in the pre--stellar core candidates, probably due to freeze-out of most molecular species heavier than He. The more massive and evolved objects likely play a dominant role in the physical properties and kinematics of the protocluster. The high level of turbulence and the fact that the measured core masses are larger than the expected thermal Jeans masses indicate that turbulence likely was an important factor in the initial fragmentation of the parental clump.Comment: 13 pages (with Appendix), 11 figure

Dense gas in IRAS 20343+4129: an ultracompact HII region caught in the act of creating a cavity

The intermediate- to high-mass star-forming region IRAS 20343+4129 is an excellent laboratory to study the influence of high- and intermediate-mass young stellar objects on nearby starless dense cores, and investigate for possible implications in the clustered star formation process. We present 3 mm observations of continuum and rotational transitions of several molecular species (C2H, c-C3H2, N2H+, NH2D) obtained with the Combined Array for Research in Millimetre-wave Astronomy, as well as 1.3 cm continuum and NH3 observations carried out with the Very Large Array, to reveal the properties of the dense gas. We confirm undoubtedly previous claims of an expanding cavity created by an ultracompact HII region associated with a young B2 zero-age main sequence (ZAMS) star. The dense gas surrounding the cavity is distributed in a filament that seems squeezed in between the cavity and a collimated outflow associated with an intermediate-mass protostar. We have identified 5 millimeter continuum condensations in the filament. All of them show column densities consistent with potentially being the birthplace of intermediate- to high-mass objects. These cores appear different from those observed in low-mass clustered environments in sereval observational aspects (kinematics, temperature, chemical gradients), indicating a strong influence of the most massive and evolved members of the protocluster. We suggest a possible scenario in which the B2 ZAMS star driving the cavity has compressed the surrounding gas, perturbed its properties and induced the star formation in its immediate surroundings.Comment: 17 pages, 13 figures. Accepted for publication in Monthly Notices of the Royal Astronomical Society (Main Journal

Intercalibration of the barrel electromagnetic calorimeter of the CMS experiment at start-up

Calibration of the relative response of the individual channels of the barrel electromagnetic calorimeter of the CMS detector was accomplished, before installation, with cosmic ray muons and test beams. One fourth of the calorimeter was exposed to a beam of high energy electrons and the relative calibration of the channels, the intercalibration, was found to be reproducible to a precision of about 0.3%. Additionally, data were collected with cosmic rays for the entire ECAL barrel during the commissioning phase. By comparing the intercalibration constants obtained with the electron beam data with those from the cosmic ray data, it is demonstrated that the latter provide an intercalibration precision of 1.5% over most of the barrel ECAL. The best intercalibration precision is expected to come from the analysis of events collected in situ during the LHC operation. Using data collected with both electrons and pion beams, several aspects of the intercalibration procedures based on electrons or neutral pions were investigated

PeptX: Using Genetic Algorithms to optimize peptides for MHC binding

<p>Abstract</p> <p>Background</p> <p>The binding between the major histocompatibility complex and the presented peptide is an indispensable prerequisite for the adaptive immune response. There is a plethora of different <it>in silico </it>techniques for the prediction of the peptide binding affinity to major histocompatibility complexes. Most studies screen a set of peptides for promising candidates to predict possible T cell epitopes. In this study we ask the question vice versa: Which peptides do have highest binding affinities to a given major histocompatibility complex according to certain <it>in silico </it>scoring functions?</p> <p>Results</p> <p>Since a full screening of all possible peptides is not feasible in reasonable runtime, we introduce a heuristic approach. We developed a framework for Genetic Algorithms to optimize peptides for the binding to major histocompatibility complexes. In an extensive benchmark we tested various operator combinations. We found that (1) selection operators have a strong influence on the convergence of the population while recombination operators have minor influence and (2) that five different binding prediction methods lead to five different sets of "optimal" peptides for the same major histocompatibility complex. The consensus peptides were experimentally verified as high affinity binders.</p> <p>Conclusion</p> <p>We provide a generalized framework to calculate sets of high affinity binders based on different previously published scoring functions in reasonable runtime. Furthermore we give insight into the different behaviours of operators and scoring functions of the Genetic Algorithm.</p

Anthropometric and glucometabolic changes in an aged mouse model of lipocalin-2 overexpression

Background:: Lipocalin-2 (LCN2) is widely expressed in the organism with pleiotropic roles. In particular, its overexpression correlates with tissue stress conditions including inflammation, metabolic disorders, chronic diseases and cancer. Objectives:: To assess the effects of systemic LCN2 overexpression on adipose tissue and glucose metabolism. Subjects:: Eighteen-month-old transgenic mice with systemic LCN2 overexpression (LCN2-Tg) and age/sex-matched wild-type mice. Methods:: Metabolic cages; histology and real-time PCR analysis; glucose and insulin tolerance tests; ELISA; flow cytometry; microPET and serum analysis. Results:: LCN2-Tg mice were smaller compared to controls but they ate (P = 0.0156) and drank (P = 0.0057) more and displayed a higher amount of visceral adipose tissue. Furthermore, LCN2-Tg mice with body weight 6520 g showed adipocytes with a higher cell area (P &lt; 0.0001) and altered expression of genes involved in adipocyte differentiation and inflammation. In particular, mRNA levels of adipocyte-derived Pparg (P 64 0.0001), Srebf1 (P &lt; 0.0001), Fabp4 (P = 0.056), Tnfa (P = 0.0391), Il6 (P = 0.0198), and Lep (P = 0.0003) were all increased. Furthermore, LCN2-Tg mice displayed a decreased amount of basal serum insulin (P = 0.0122) and a statistically significant impaired glucose tolerance and insulin sensitivity consistent with Slc2a2 mRNA (P 64 0.0001) downregulated expression. On the other hand, Insr mRNA (P 64 0.0001) was upregulated and correlated with microPET analysis that demonstrated a trend in reduced whole-body glucose consumption and MRGlu in the muscles and a significantly reduced MRGlu in brown adipose tissue (P = 0.0247). Nevertheless, an almost nine-fold acceleration of hexokinase activity was observed in the LCN2-Tg mice liver compared to controls (P = 0.0027). Moreover, AST and ALT were increased (P = 0.0421 and P = 0.0403, respectively), which indicated liver involvement also demonstrated by histological staining. Conclusions:: We show that LCN2 profoundly impacts adipose tissue size and function and glucose metabolism, suggesting that LCN2 should be considered as a risk factor in ageing for metabolic disorders leading to obesity

Identifying characteristic features of the retinal and choroidal vasculature in choroideremia using optical coherence tomography angiography

PURPOSE: Using optical coherence tomography angiography (OCTA) to investigate the area with flow in the superficial retinal vessel network (SVRN) and choriocapillaris (CC) layer among male subjects with choroideremia (CHM), female carriers, and normal controls to identify vascular changes. PATIENTS AND METHODS: Images of SRVN and CC layer were acquired in 9 affected males, 5 female carriers, and 14 age- and gender-matched controls using the Angiovue software of the RTVue XR Avanti. RESULTS: The mean age was 33 years for affected male CHM patients (median 30 years), 46 years for female carriers (median 53 years), and 39 years for controls (median 38.5). Mean SRVN area±SD in subjects with CHM was 12.93±2.06 mm², in carrier subjects 15.36±0.60 mm², and in controls 15.30±1.35 mm² (P<0.01). The mean CC area±SD with flow was 6.97±5.26 mm² in CHM subjects, 21.65±0.17 mm² in carriers and 21.36±0.76 mm² in controls (P<0.01). SRVN and CC area with flow showed a negative correlation in CHM subjects with the age (r=−0.86; P<0.003 and r=−0.77; P<0.01, respectively). CC area with flow had a positive correlation with SRVN (r=0.83, P<0.001). Overall, visual acuity had a negative correlation with SRVN and CC area with flow (r=−0.67, P<0.001 and r=−0.57, P<0.002, respectively). CONCLUSIONS: This is the first study to highlight changes in the SRVN in CHM subjects. OCTA detected a reduced area with flow in both retinal and choroidal circulations, and may be a useful tool for monitoring natural history and disease progression in forthcoming clinical trials