Mechanisms of barrier layer formation and erosion from in situ observations in the Bay of Bengal

During the Bay of Bengal (BoB) Boundary Layer Experiment (BoBBLE) in the southern BoB, time series of microstructure measurements were obtained at 8N, 89E from 4-14 July, 2016. These observations captured events of barrier layer (BL) erosion and re-formation. Initially, a three-layer structure was observed: a fresh surface mixed layer (ML) of thickness 10-20 m; a BL below of 30-40 m thickness with similar temperature but higher salinity; a high salinity core layer, associated with Summer Monsoon Current. Each of these three layers was in relative motion to the others, leading to regions of high shear at the interfaces. However, haline stratification overcame the destabilising influence of the shear regions, and preserved the three-layer structure. A salinity budget using in situ observations suggested that during the BL erosioni, high salinity surface waters (34.5 PSU) with weak stratification were advected to the time series location and replaced the three-layer structure with a deep ML (~60 m). Weakened stratification at the time series location also allowed atmospheric wind forcing to penetrate deeper. Turbulent kinetic energy dissipation rate and eddy diffusivity showed elevated values above 10-7 W kg-1 and 10-4 m2 s-1, respectively, in the upper 60 m. Later, the surface salinity decreased again (33.8 PSU) through horizontal advection, stratification became stronger and elevated mixing rates were confined to the upper 20 m, and the BL reformed. A 1-D model analysis suggests that in the study region, advection of temperature-salinity characteristics is essential for the maintenance of the BL and to the extent to which mixing penetrates the water column

Profile of Immune Cells in Axillary Lymph Nodes Predicts Disease-Free Survival in Breast Cancer

BACKGROUND: While lymph node metastasis is among the strongest predictors of disease-free and overall survival for patients with breast cancer, the immunological nature of tumor-draining lymph nodes is often ignored, and may provide additional prognostic information on clinical outcome. METHODS AND FINDINGS: We performed immunohistochemical analysis of 47 sentinel and 104 axillary (nonsentinel) nodes from 77 breast cancer patients with 5 y of follow-up to determine if alterations in CD4, CD8, and CD1a cell populations predict nodal metastasis or disease-free survival. Sentinel and axillary node CD4 and CD8 T cells were decreased in breast cancer patients compared to control nodes. CD1a dendritic cells were also diminished in sentinel and tumor-involved axillary nodes, but increased in tumor-free axillary nodes. Axillary node, but not sentinel node, CD4 T cell and dendritic cell populations were highly correlated with disease-free survival, independent of axillary metastasis. Immune profiling of ALN from a test set of 48 patients, applying CD4 T cell and CD1a dendritic cell population thresholds of CD4 ≥ 7.0% and CD1a ≥ 0.6%, determined from analysis of a learning set of 29 patients, provided significant risk stratification into favorable and unfavorable prognostic groups superior to clinicopathologic characteristics including tumor size, extent or size of nodal metastasis (CD4, p < 0.001 and CD1a, p < 0.001). Moreover, axillary node CD4 T cell and CD1a dendritic cell populations allowed more significant stratification of disease-free survival of patients with T1 (primary tumor size 2 cm or less) and T2 (5 cm or larger) tumors than all other patient characteristics. Finally, sentinel node immune profiles correlated primarily with the presence of infiltrating tumor cells, while axillary node immune profiles appeared largely independent of nodal metastases, raising the possibility that, within axillary lymph nodes, immune profile changes and nodal metastases represent independent processes. CONCLUSION: These findings demonstrate that the immune profile of tumor-draining lymph nodes is of novel biologic and clinical importance for patients with early stage breast cancer

BoBBLE: ocean-atmosphere interaction and its impact on the South Asian monsoon

The Bay of Bengal (BoB) plays a fundamental role in controlling the weather systems that make up the South Asian summer monsoon system. In particular,the southern BoB has cooler sea surface temperature (SST) that influence ocean-atmosphere interaction and impact on the monsoon. Compared to the southeast, the southwestern BoB is cooler, more saline, receives much less rain, and is influenced by the Summer Monsoon Current(SMC). To examine the impact of these features on the monsoon, the BoB Boundary Layer Experiment (BoBBLE) was jointly undertaken by India and the UK during June–July 2016. Physical and bio-geochemical observations were made using a CTD, five ocean gliders, a uCTD, a VMP, two ADCPs, Argo floats, drifting buoys, meteorological sensors and upper air radiosonde balloons. The observations were made along a zonal section at 8◦N between 85.3◦E and 89◦E with a 10-day time series at 89◦E, 8◦N. This paper presents the new observed features of the southern BoB from the BoBBLE field program, supported by satellite data. Key results from the BoBBLE field campaign show the Sri Lanka Dome and the SMC in different stages of their seasonal evolution and two freshening events during which salinity decreased in the upper layer leading to the formation of thick barrier layers. BoBBLE observations were taken during a suppressed phase of the intraseasonal oscillation; they captured in detail the warming of the ocean mixed layer and preconditioning of the atmosphere to convection

Integrated Omic Analysis Delineates Pathways Modulating Toxic TDP-43 Protein Aggregates in Amyotrophic Lateral Sclerosis

Amyotrophic lateral sclerosis (ALS) is a multi-systemic, incurable, amyloid disease affecting the motor neurons, resulting in the death of patients. The disease is either sporadic or familial with SOD1, C9orf72, FUS, and TDP-43 constituting the majority of familial ALS. Multi-omics studies on patients and model systems like mice and yeast have helped in understanding the association of various signaling and metabolic pathways with the disease. The yeast model system has played a pivotal role in elucidating the gene amyloid interactions. We carried out an integrated transcriptomic and metabolomic analysis of the TDP-43 expressing yeast model to elucidate deregulated pathways associated with the disease. The analysis shows the deregulation of the TCA cycle, single carbon metabolism, glutathione metabolism, and fatty acid metabolism. Transcriptomic analysis of GEO datasets of TDP-43 expressing motor neurons from mice models of ALS and ALS patients shows considerable overlap with experimental results. Furthermore, a yeast model was used to validate the obtained results using metabolite addition and gene knock-out experiments. Taken together, our result shows a potential role for the TCA cycle, cellular redox pathway, NAD metabolism, and fatty acid metabolism in disease. Supplementation of reduced glutathione, nicotinate, and the keto diet might help to manage the disease

Octadecyltrichlorosilane-Modified Superhydrophobic-Superoleophilic Stainless Steel Mesh for Oil-Water Separation

Recently, oil-water separation has become an important topic due to its increasing commercial demand. Here, in this study, a simple technique to prepare superhydrophobic-superoleophilic mesh for oil-water separation is reported. The pre-cleaned stainless steel mesh is modified by octadecyltrichlorosilane (ODS) through solution immersion method. The modified mesh shows the water contact angle (WCA) of 158 ± 2° and oil contact angle (OCA) of 0°. The prepared superhydrophobic-superoleophilic mesh effectively separates various oils, including petrol, kerosene, diesel, vegetable oil, and coconut oil from oil–water mixtures with separation efficiency greater than 95%, and stable recyclability up to 10 cycles. In case of low viscosity oil (petrol), the modified mesh shows permeation flux of 2086.95 ± 104.34 L/(m2.h), which is higher than high viscosity oilsThis work is financially supported by DST ? INSPIRE Faculty Scheme, Department of Science and Technology (DST), Govt. of India. [DST/INSPIRE/04/2015/000281]. S.S.L. acknowledges financial assistance from the Henan University, Kaifeng, P. R. China. The authors greatly appreciate the support of the National Natural Science Foundation of China (21950410531).Scopu