Validation of a statistic algorithm applied to LES model - Part I: First and second order statistics

The main objective of this work is to develop a statistical algorithm to process the data generated by the Large-Eddy-Simulation model (LES) in real time. The simulations analyzed here were based on a convective, neutral and stable periods. Mainly the temperature and velocity components were analyzed. The new statistical algorithm generates all the first and second order statistic moments for “u,v,w, ¿ ,q”, and the components of TKE equation budget. All these parameters were developed to the resolved and sub-grid scales and indicate agreement with the expected profile

Developing statistical literacy: Student learning and teacher education

Recent international and national mathematics curriculum guidelines indicate the development of students’ statistical literacy, at different levels of schooling, as a major educational aim. In Portugal, the mathematics syllabus for basic education, which began to be implemented in 2009, gave a greater emphasis on statistics, presenting more demanding learning goals, since the elementary levels. This represented a challenging situation for practicing teachers, requiring them to develop new perspectives about the teaching and learning of statistics. In this context, the project Developing statistical literacy: Student learning and teacher education was planned aiming to study the development of statistical literacy from elementary to secondary education, with special attention to two main issues: i) the characterization of key aspects of students’ statistical literacy, particularly regarding the ability to formulate questions, collect data and represent them to answer those questions, and ii) the development of statistical and didactical knowledge for teaching in different schools levels. As the project unfolded, another research strand associated with students’ statistical reasoning and the necessary conditions for its development emerged

Observational Characterization of the Downward Atmospheric Longwave Radiation at the Surface in the City of São Paulo

This work describes the seasonal and diurnal variations of downward longwave atmospheric irradiance (LW) at the surface in São Paulo, Brazil, using 5-min-averaged values of LW, air temperature, relative humidity, and solar radiation observed continuously and simultaneously from 1997 to 2006 on a micrometeorological platform, located at the top of a 4-story building. An objective procedure, including 2-step filtering and dome emission effect correction, was used to evaluate the quality of the 9-yr-long LW dataset. The comparison between LW values observed and yielded by the Surface Radiation Budget project shows spatial and temporal agreement, indicating that monthly and annual average values of LW observed in one point of São Paulo can be used as representative of the entire metropolitan region of São Paulo. The maximum monthly averaged value of the LW is observed during summer (389 ± 14 W m-2; January), and the minimum is observed during winter (332 ± 12 W m-2; July). The effective emissivity follows the LW and shows a maximum in summer (0.907 ± 0.032; January) and a minimum in winter (0.818 ± 0.029; June). The mean cloud effect, identified objectively by comparing the monthly averaged values of the LW during clear-sky days and all-sky conditions, intensified the monthly average LW by about 32.0 ± 3.5 W m-2 and the atmospheric effective emissivity by about 0.088 ± 0.024. In August, the driest month of the year in São Paulo, the diurnal evolution of the LW shows a minimum (325 ± 11 W m-2) at 0900 LT and a maximum (345 ± 12 W m-2) at 1800 LT, which lags behind (by 4 h) the maximum diurnal variation of the screen temperature. The diurnal evolution of effective emissivity shows a minimum (0.781 ± 0.027) during daytime and a maximum (0.842 ± 0.030) during nighttime. The diurnal evolution of all-sky condition and clear-sky day differences in the effective emissivity remain relatively constant (7% ± 1%), indicating that clouds do not change the emissivity diurnal pattern. The relationship between effective emissivity and screen air temperature and between effective emissivity and water vapor is complex. During the night, when the planetary boundary layer is shallower, the effective emissivity can be estimated by screen parameters. During the day, the relationship between effective emissivity and screen parameters varies from place to place and depends on the planetary boundary layer process. Because the empirical expressions do not contain enough information about the diurnal variation of the vertical stratification of air temperature and moisture in São Paulo, they are likely to fail in reproducing the diurnal variation of the surface emissivity. The most accurate way to estimate the LW for clear-sky conditions in São Paulo is to use an expression derived from a purely empirical approach

MUMAL: multivariate analysis in shotgun proteomics using machine learning techniques.

BACKGROUND: The shotgun strategy (liquid chromatography coupled with tandem mass spectrometry) is widely applied for identification of proteins in complex mixtures. This method gives rise to thousands of spectra in a single run, which are interpreted by computational tools. Such tools normally use a protein database from which peptide sequences are extracted for matching with experimentally derived mass spectral data. After the database search, the correctness of obtained peptide-spectrum matches (PSMs) needs to be evaluated also by algorithms, as a manual curation of these huge datasets would be impractical. The target-decoy database strategy is largely used to perform spectrum evaluation. Nonetheless, this method has been applied without considering sensitivity, i.e., only error estimation is taken into account. A recently proposed method termed MUDE treats the target-decoy analysis as an optimization problem, where sensitivity is maximized. This method demonstrates a significant increase in the retrieved number of PSMs for a fixed error rate. However, the MUDE model is constructed in such a way that linear decision boundaries are established to separate correct from incorrect PSMs. Besides, the described heuristic for solving the optimization problem has to be executed many times to achieve a significant augmentation in sensitivity. RESULTS: Here, we propose a new method, termed MUMAL, for PSM assessment that is based on machine learning techniques. Our method can establish nonlinear decision boundaries, leading to a higher chance to retrieve more true positives. Furthermore, we need few iterations to achieve high sensitivities, strikingly shortening the running time of the whole process. Experiments show that our method achieves a considerably higher number of PSMs compared with standard tools such as MUDE, PeptideProphet, and typical target-decoy approaches. CONCLUSION: Our approach not only enhances the computational performance, and thus the turn around time of MS-based experiments in proteomics, but also improves the information content with benefits of a higher proteome coverage. This improvement, for instance, increases the chance to identify important drug targets or biomarkers for drug development or molecular diagnostics

Conjugated Linoleic Acid Supplementation: Lipid Content And Hepatic Histology In Healthy Wistar Rats [suplementação Com ácido Linoleico Conjugado: Conteúdo De Lípides E Histologia Hepática De Ratos Wistar Saudáveis]

This work aimed to evaluate the effects of the consumption of two commercial conjugated linoleic acid (CLA) mixtures on lipid content and liver histology of healthy rats. The investigation was carried out using thirty rats divided into three groups: C (control), AE (AdvantEdge®CLA), and CO (CLA One®). The concentration of CLA was 2% of feed consumption, and the animals were supplemented daily for 42 days. The total lipid content of the liver was determined, and the histology of the organ was examined by Transmission Electronic Microscopy. The results of total liver lipid contents did not exhibit significant differences between the groups. With regard to hepatic histology, it was observed that although fat globules were visibly present in higher numbers and bigger size in the CLA groups, the organ histology was considered normal since both cytoplasm and organelles showed integrity. It was concluded that even though liver microscopic images indicated the presence of fat globules in the liver, from a statistical point of view, the supplementation for 42 days did not bring about lipid accumulation, nor did it alter hepatic histology.311141146Adams, L.A., Angulo, P., Lindor, K.D., Nonalcoholic fatty liver disease (2005) Canadian Medical Association Journal, 172 (7), pp. 899-905Akbiyik, F., Ligand-induced expression of peroxissome proliferators activated receptor α and activation of fatty oxidation enzymes in fatty liver (2004) European Journal of Clinical Investigation, 34 (6), pp. 429-435Akyüz, F., What is the best indicator for evaluating treatment response in nonalcoholic fatty liver disease: Histology or aminotransferase levels? (2005) Journal of Gastroenterology and Hepatology, 20 (1), pp. 167-168Basu, S., Smedman, A., Vesby, B., Conjugated linoleic acid induces lipid peroxidation in humans (2000) FEBS Letters, 468 (1), pp. 33-36Belury, M.A., Conjugated linoleic acid is na activator and ligand for peroxissome proliferator-activated receptor-gama (PPARγ) (2002) Nutrition Research, 22 (7), pp. 817-824Belury, M.A., Kempa-Steczko, A., Conjugated linoleic acid modulates hepatic lipid composition in mice (1997) Lipids, 32 (2), pp. 199-204Bligh, E.G., Dyer, W.J., A rapid method of total lipid extration and purification (1959) Canadian Journal of Biochemistry and Physiology, 37 (8), pp. 911-917Brown, J.M., McIntosh, M.K., Conjugated linoleic acid in humans: Regulation of adiposity and insulin sensitivity (2003) Journal of Nutrition, 133 (10), pp. 3041-3046Brunt, E.M., Nonalcoholic steatohepatitis: Definition and pathology (2001) Seminars in Liver Disease, 21 (1), pp. 3-16Cherian, G., Dietary CLA alters yolk and tissue FA composition and hepatic histopathology of laying hens (2002) Lipids, 37 (8), pp. 751-757Cherian, G., Goeger, M.P., Hepatic lipid characteristics and histopathology of laying hens fed CLA or n-3 fatty acids (2004) Lipids, 39 (1), pp. 31-36Chituri, S., Farel, G.C., Etiopathogenesis of nonalcoholic steatohepatitis (2001) Seminars in Liver Disease, 21 (1), pp. 27-41Choi, J.S., Song, J., Conjugated linoleic acid, obesity, and insulin resistance: Waiting for the day of liberation from chronic disease (2005) Nutrition, 21 (11), pp. 1170-1172Clement, L., Dietary trans-10, cis-12 conjugated linoleic acid induces hyperinsulinemia and fatty liver in the mouse (2002) Journal Lipid Research, 43 (9), pp. 1400-1409Elitsur, Y., Treatment for NASH: The value of histology (2005) Journal Gastroenterology: A Journal of Clinical Gastroenterology, 100 (1), pp. 250-251Goena, M., Effect of the raw legume Vicia ervilha on muscle and liver protein metabolism in growing rats (1989) Revista Española de Fisiologia, 45 (SUPPL.), pp. 55-60Granlund, L., Trans10, cis12-conjugated linoleic acid prevents triacylglycerol accumulation in adipocytes by acting as a PPARγ modulator (2003) Journal of Lipid Research, 44 (8), pp. 1441-1452Haddad, A., (1998) Técnicas básicas de microscopia eletrônica aplicadas às ciências biológicas, , Rio de Janeiro: Sociedade Brasileira de MicroscopiaHoek, B.V., Non-alcoholic fatty liver disease: A brief review (2004) Scandinavian Journal of Gastroenterology, 39 (SUPPL.), pp. 56-59Kang, K., Trans-10, cis-12 CLA inhibits differentiation of 3T3-L1 adipocytes and decreases PPARγ expression (2003) Biochemical and Biophysical Research Communications, 303 (3), pp. 795-799Lavine, J.E., Vitamin E treatment of nonalcoholic steatohepatitis in children: A pilot study (2000) Journal of Pediatrics, 136 (6), pp. 734-738Ludwig, J., Nonalcoholic steatohepatitis. Mayo Clinic experience with a hitherto unnamed disease (1980) Mayo Clinic Procedings, 55 (7), pp. 434-438McArulla, M.T., Effects of conjugated linoleic acid on liver composition and fatty acid oxidation are isomer-dependent in hamster (2005) Nutrition, 21 (4), pp. 512-519Moya-Camarena, S.Y., Conjugated linoleic acid is a potent naturally occurring ligand and activator of PPARα (1999) Journal Lipid Research, 40 (8), pp. 1426-1433Oustrowska, E., Milk conjugated linoleic and trans-vaccenic acids are highest in Spring in grazing cows (2004) Asian Pacific Journal of Clinical Nutrition, 13 (SUPPL.), pp. S53Pariza, M.W., Effects of temperature and time on mutagen formation in pan-fried hamburger (1979) Cancer Letter, 7 (2-3), p. 63Pariza, M.W., Hargraves, W.A., A beef-derived mutagenesis modulator inhibits initiation of mouse epidermal tumors by 7,12-dimethylbenz[a]anthracene (1985) Carcinogenesis, 6 (4), p. 591Parodi, P.W., Conjugated octadecadienoic acids of milk fat (1977) Journal of Dairy Science, 60 (10), pp. 1550-1553Reeves, P.G., Nielsen, F.H., Fahey Jr., G.C., AIN-93 Purified diets for laboratory rodents: Final report of the American Institute of Nutrition Ad Hoc Writing Committee on the Reformulation of the AIN-76A rodent diet (1993) Journal of Nutrition, 123 (11), pp. 1939-1951Risérus, U., Effects of cis-9, trans-11 conjugated linoleic acid supplementation on insulin sensitivity, lipid peroxidation, and proinflamatory markers in obese men (2004) American Journal of Clinical Nutrition, 80 (2), pp. 279-283Salas-Salvadó, J., Marquez-Sandoval, F., Bulló, M., Conjugated linoleic acid intake in humans: A systematic review focusing on its effects on body composition, glucose, and lipid metabolism (2006) Critical Reviews in Food Science and Nutritio, 46 (6), pp. 479-488Santos-Zago, L.F., Botelho, A.P., Oliveira, A.C., Supplementation with commercial mixtures of conjugated linoleic acid in association with vitamin E and the process of lipid autoxidation in rats (2007) Lipids, 42 (9), pp. 845-854Sato, S., Ultrastructural and morphometric studies of normal rat hepatocytes (2004) Journal of Submicroscopic Cytology and Pathology, 36 (2), pp. 131-140Sehat, N., Identification of conjugated linoleic acid isomers in cheese by gas chromatography, silver ion high performance liquid chromatography and mass spectral reconstructed ion profiles. 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Study for pediatric protocol optimization in chest CT scan

Radiological exams are increasingly used in clinic for diagnostic analysis of different types of pathologies. These exams are associated with a dose that is received by the patient. In addition, the risks in exposure to ionizing radiation are different according to the group which the individual belongs. According to age, the group of children is more radiosensitive than adults. In this work we have obtained values of the air-weighted kerma index for chest scans studies in a General Electric Computed Tomography (CT) scanner model Discovery with 64-channels. Using an adult protocol, two scans have been performed, one using a cylinder standard PMMA phantom while the second one has used an oblong chest phantom designed for a two year old pediatric patient. Furthermore, other protocols have been selected with a constant voltage but changing the X-ray tube current and maintaining the image quality in order to obtain a reduction in the received dose by the pediatric patient. The use of the adult protocol in the child phantom has an air-weighted kerma index of 89.5% greater than the kerma index using the adult phantom. Due small patients receive higher doses; the use of specific protocols for children is important for the dose reduction in CT tests. An optimized pediatric chest protocol is presented, obtaining as a result dose reduction compared with the adult protocol of 62.2%. Because of different CT scanners characteristics and in order to optimize protocols regard to dose and diagnostic image quality, it is necessary to use pediatric phantoms in health centers

Survey Of Acarin Fauna In Dust Samplings Of Curtains In The City Of Campinas, Brazil.

The aim of this study was to investigate the mite fauna present in 33 living room and 22 bedroom curtain dust samples from 41 different homes in the southern Brazilian city of Campinas, SP. A total of 148 mite bodies were found. Of these, 83 were found in living-room curtain samples (56.1% of total) and 65 were in bedroom curtain dust samples (43.9%). The most frequently observed mite suborders were: Acaridida (n = 79; 53.4%), Actinedida (n=53; 35.8%), Oribatida (n=14; 9.5%), and Gamasida (n=2; 1.3%). The most frequent families were Pyroglyphidae (n=61; 41.2%), Eriophyidae (n=25; 16.9%), Tarsonemidae (n=15; 10.1%), and Glycyphagidae (n=13; 8.8%). No statistical difference was observed between the number of mites found in the samples from living room and bedroom curtains.651252

Efeito de agentes clarificantes na composição volátil do hidromel

info:eu-repo/semantics/publishedVersio