Scheduling Self-Suspending Tasks: New and Old Results (Artifact)

In computing systems, a job may suspend itself (before it finishes its execution) when it has to wait for certain results from other (usually external) activities. For real-time systems, such self-suspension behavior has been shown to induce performance degradation. Hence, the researchers in the real-time systems community have devoted themselves to the design and analysis of scheduling algorithms that can alleviate the performance penalty due to self-suspension behavior. As self-suspension and delegation of parts of a job to non-bottleneck resources is pretty natural in many applications, researchers in the operations research (OR) community have also explored scheduling algorithms for systems with such suspension behavior, called the master-slave problem in the OR community. This paper first reviews the results for the master-slave problem in the OR literature and explains their impact on several long-standing problems for scheduling self-suspending real-time tasks. For frame-based periodic real-time tasks, in which the periods of all tasks are identical and all jobs related to one frame are released synchronously, we explore different approximation metrics with respect to resource augmentation factors under different scenarios for both uniprocessor and multiprocessor systems, and demonstrate that different approximation metrics can create different levels of difficulty for the approximation. Our experimental results show that such more carefully designed schedules can significantly outperform the state-of-the-art

Reduced discomfort during high-definition transcutaneous stimulation using 6% benzocaine

Background: High-Definition transcranial Direct Current Stimulation (HD-tDCS) allows for non-invasive neuromodulation using an array of compact (approximately 1 cm2 contact area) “High-Definition” (HD) electrodes, as compared to conventional tDCS (which uses two large pads that are approximately 35 cm2). In a previous transcutaneous study, we developed and validated designs for HD electrodes that reduce discomfort over \u3e20 min session with 2 mA electrode current. Objective: The purpose of this study was to investigate the use of a chemical pretreatment with 6% benzocaine (topical numbing agent) to further reduce subjective discomfort during transcutaneous stimulation and to allow for better sham controlled studies. Methods: Pre-treatment with 6% benzocaine was compared with control (no pretreatment) for 22 min 2 mA of stimulation, with either CCNY-4 or Lectron II electroconductive gel, for both cathodal and anodal transcutaneous (forearm) stimulation (eight different combinations). Results: Results show that for all conditions and polarities tested, stimulation with HD electrodes is safe and well tolerated and that pretreatment further reduced subjective discomfort. Conclusion: Pretreatment with a mild analgesic reduces discomfort during HD-tDCS

Congo River sand and the equatorial quartz factory

A never solved problem in sedimentary petrology is the origin of sandstone consisting exclusively of quartz and most durable heavy minerals. The Congo River offers an excellent test case to investigate under which tectonic, geomorphological, climatic, and geochemical conditions pure quartzose sand is generated today. In both upper and lowermost parts of the catchment, tributaries contain significant amounts of feldspars, rock fragments, or moderately stable heavy minerals pointing at the central basin as the main location of the "quartz factory". In Congo sand, quartz is enriched relatively to all other minerals including zircon, as indicated by Si/Zr ratios much higher than in the upper continental crust. Selective elimination of old zircons that accumulated radiation damage through time is suggested by low percentages of grains yielding Archean U-Pb ages despite the basin being surrounded by Archean cratonic blocks. Intense weathering is documented by the lack of carbonate grains in sand and by dominant kaolinite and geochemical signatures in mud. In sand, composed almost entirely of SiO2, the weathering effect is masked by massive addition of quartz grains recycled during multiple events of basin inversion since the Proterozoic. Changes in mineralogical, geochemical, and geochronological signatures across Bas-Congo concur to suggest that approximately 10% of the sand supplied to the Atlantic Ocean is generated by rapid fluvial incision into the recently uplifted Atlantic Rise. The Congo River connects with a huge canyon similar to 30 km upstream of the mouth, and pure quartzose sand is thus funnelled directly toward the deep-sea to feed a huge turbidite fan. Offshore sediments on both sides of the canyon are not derived from the Congo River. They reflect mixed provenance, including illite-rich dust wind-blown from the arid Sahel and augite, hypersthene, and smectite ejected from volcanic centres probably situated along the Cameroon Line in the north. Because mixing of detritus from diverse sources and supply of polycyclic grains almost invariably occurs in the terminal lowland tract of a sediment-routing-system, no ancient sandstone can be safely considered as entirely first-cycle. Moreover, the abundance of pure quartzarenite in the rock record can hardly be explained by chemical weathering or physical recycling alone. The final cleansing of minerals other than quartz, zircon, tourmaline, and rutile requires one or more cycles of chemical dissolution during diagenesis, which operates at higher temperatures and over longer periods than weathering at the Earth's surface

Animal Models in Orthopedic Research: The Proper Animal Model to Answer Fundamental Questions on Bone Healing Depending on Pathology and Implant Material

Different species vary in bone metabolism, especially in modeling and remodeling of the bone. Human-related diseases with severe outcomes on bone, such as osteoporosis or osteoarthritis, are often reflected in animal models, which cannot adequately mimic the human situation. The pre-clinical investigation of implant materials in vivo complicates the search for the ideal animal model, especially when combining pathologic bone diseases and implant material. For instance, while alterations in trabecular bone architecture are investigated in female osteoporotic rats, rodents commonly lack cortical bone remodeling or secondary osteon formation. Small ruminants are commonly used to study long bone defects or orthopedic materials, due to their comparability to humans regarding body weight, bone size, and fracture healing. Nevertheless, there are important differences between human and ruminant models: plexiform cortical bone, seasonal bone loss, and stronger trabecular bone appear in sheep compared to humans. This chapter will summarize fundamental differences in bone quality between different animal models used for orthopedic and implant material research. Thus, choosing the ideal animal model to answer the proposed research question remains the key to guarantee a solid and excellent scientific study

Physiological Trade-Offs in Self-Maintenance: Plumage Molt and Stress Physiology in Birds

Trade-offs between self-maintenance processes can affect life-history evolution. Integument replacement and the stress response both promote self-maintenance and affect survival in vertebrates. Relationships between the two processes have been studied most extensively in birds, where hormonal stress suppression is down regulated during molt in seasonal species, suggesting a resource-based trade-off between the two processes. The only species found to differ are the rock dove and Eurasian tree sparrow, at least one of which performs a very slow molt that may reduce resource demands during feather growth, permitting investment in the stress response. To test for the presence of a molt–stress response trade-off, we measured hormonal stress responsiveness during and outside molt in two additional species with extended molts, red crossbills (Loxia curvirostra) and zebra finches (Taeniopygia guttata). We found that both species maintain hormonal stress responsiveness during molt. Further, a comparative analysis of all available species revealed a strong relationship between molt duration and degree of hormonal suppression. Though our results support trade-off hypotheses, these data can also be explained by alternative hypotheses that have not been formally addressed in the literature. We found a strong relationship between stress suppression and seasonality of breeding and evidence suggesting that the degree of suppression may be either locally adaptable or plastic and responsive to local environmental conditions. We hypothesize that environmental unpredictability favors extended molt duration, which in turn allows for maintenance of the hormonal stress response, and discuss implications of a possible trade-off for the evolution of molt schedules

Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans

Changes in the cis-regulation of neural genes likely contributed to the evolution of our species' unique attributes, but evidence of a role for natural selection has been lacking. We found that positive natural selection altered the cis-regulation of human prodynorphin, the precursor molecule for a suite of endogenous opioids and neuropeptides with critical roles in regulating perception, behavior, and memory. Independent lines of phylogenetic and population genetic evidence support a history of selective sweeps driving the evolution of the human prodynorphin promoter. In experimental assays of chimpanzee–human hybrid promoters, the selected sequence increases transcriptional inducibility. The evidence for a change in the response of the brain's natural opioids to inductive stimuli points to potential human-specific characteristics favored during evolution. In addition, the pattern of linked nucleotide and microsatellite variation among and within modern human populations suggests that recent selection, subsequent to the fixation of the human-specific mutations and the peopling of the globe, has favored different prodynorphin cis-regulatory alleles in different parts of the world

Role of Eddies in the Carbon Pump of Eastern Boundary Upwelling Systems, REEBUS, Cruise No. M156, 03.07. – 01.08.2019 Mindelo (Cap Verde) – Mindelo

Summary The major goal of the RV METEOR cruise M156 to Cape Verdian waters and the Mauritanian upwelling area off West Africa was to contribute to a better quantitative understanding of the effects of mesoscale eddies on CO2 source/sink mechanisms and the biological carbon pump in eastern boundary upwelling areas as well as their effects to the oligotrophic periphery including the deep-sea floor. The cruise M156 (MOSES Eddy Study I) was conducted within the framework of the BMBF funded REEBUS project (Role of Eddies in the Carbon Pump of Eastern Boundary Upwelling Systems) by a consortium of physical, biological (benthic microbiology, bacterial plankton, protists) and biogeochemical oceanographers. Specific aims were i. the quantification of solute and particle fluxes within and at the periphery of eddies; ii. to determine the turnover of carbon species, air-sea gas exchange of CO2, iii. the determination of the protistan and bacterial plankton community structures in the surface layers of an eddy, and iv. to quantify the magnitude and variability of material fluxes to the seabed and turnover in the sediment underneath the eddy passage. To achieve these aims, the cruise had two major observing strategies: i. an intense benthic/pelagic program along the zonal eddy passage at 18°N. Along this corridor ranging from 24°20’ to 16°30’W, five benthic/pelagic stations (E1 to E5) in different water depths and distances from the Mauritanian coast were performed. The motivation for this survey has been to resolve zonal gradients in pelagic element cycling as well as of organic matter degradation and burial in the seabed, which in turn could potentially be linked with changes in eddy induced primary- and export production. ii. the detailed investigation of an individual eddy to investigate physical, biogeochemical and biological processes on meso- to submeso-scales (100km to 10m). Satellite data analysis was performed before and during the cruise to identify a suitable eddy from a combination of sea-level anomaly, ocean color as Chl-a proxy, and sea-surface temperature supplemented with shipboard current velocity measurements. A total of 171 stations were sampled. The water column program consists of 59 CTD casts, 29 MSS and 20 Marine Snow Catcher deployments. For biogeochemical measurements at the sea surface two deployments of a Lagrangian Surface Drifter and one Waveglider deployment were conducted. At the seafloor, we conducted 10 BIGO deployments. Ten seafloor imaging surveys were performed using the towed camera system OFOS, supplemented with 7 Multibeam and 1 Sidescan surveys. In deviation from the cruise proposal, the planned long-term deployment of a Lander, which was planned to record a time series of oxygen fluxes during the passage of an eddy, was not deployed due to a major delay in its design and manufacturing. The planned AUV (Girona 500) deployments at the shallow E5 station close to the Mauritanian coast station did also not take place. Despite moderate weather conditions, all deployments were successful, hence all the data and sample material aimed for has been achieved. It is to expect that as planned all scientific questions can be addressed. Especially in the synthesis of all REEBUS cruises and the consideration of data from earlier cruises (MSM17/4, M107) into this region a high scientific potential can be expected

Highly conserved serine residue 40 in HIV-1 p6 regulates capsid processing and virus core assembly

Background: The HIV-1 p6 Gag protein regulates the final abscission step of nascent virions from the cell membrane by the action of two late assembly (L-) domains. Although p6 is located within one of the most polymorphic regions of the HIV-1 gag gene, the 52 amino acid peptide binds at least to two cellular budding factors (Tsg101 and ALIX), is a substrate for phosphorylation, ubiquitination, and sumoylation, and mediates the incorporation of the HIV-1 accessory protein Vpr into viral particles. As expected, known functional domains mostly overlap with several conserved residues in p6. In this study, we investigated the importance of the highly conserved serine residue at position 40, which until now has not been assigned to any known function of p6. Results: Consistently with previous data, we found that mutation of Ser-40 has no effect on ALIX mediated rescue of HIV-1 L-domain mutants. However, the only feasible S40F mutation that preserves the overlapping pol open reading frame (ORF) reduces virus replication in T-cell lines and in human lymphocyte tissue cultivated ex vivo. Most intriguingly, L-domain mediated virus release is not dependent on the integrity of Ser-40. However, the S40F mutation significantly reduces the specific infectivity of released virions. Further, it was observed that mutation of Ser-40 selectively interferes with the cleavage between capsid (CA) and the spacer peptide SP1 in Gag, without affecting cleavage of other Gag products. This deficiency in processing of CA, in consequence, led to an irregular morphology of the virus core and the formation of an electron dense extra core structure. Moreover, the defects induced by the S40F mutation in p6 can be rescued by the A1V mutation in SP1 that generally enhances processing of the CA-SP1 cleavage site. Conclusions: Overall, these data support a so far unrecognized function of p6 mediated by Ser-40 that occurs independently of the L-domain function, but selectively affects CA maturation and virus core formation, and consequently the infectivity of released virions