Observations of hydromagnetic turbulence in the solar wind

MHD turbulence is studied by analyzing magnetic field and plasma observations from Helios-1 and -2 at minimum solar activity. The steady conditions in the plasma flows and the magnetic field sector structure in 1975/1976 facilitate an investigation of the radial evolution of the turbulence from 0.29 to 1AU. In high speed streams the fluctuations in the solar wind velocity v and the magnetic field b are highly correlated (the correction coefficient almost being one), which indicates that the turbulence is mainly Alfvenic in high speed plasma. While some general fluctuation properties remain essentially unchanged from 0.29 to 1AU, power spectral analysis reveals a different frequency composition of the Alfvenic turbulence at different heliocentric distances. At 0.3AU much more 'high' frequency fluctuations contribute to the total power in the magnetic field and velocity fluctuations than at 1AU. The contributions of field magnitude fluctuations are found to be distance and frequency dependent. Magnetic field spectra with an extended frequency range up to 470Hz show certain frequency bands, where the steepness of the spectra is independent of the helicocentric distance

Impact of the representation of marine stratocumulus clouds on the anthropogenic aerosol effect

Stratocumulus clouds are important for climate as they reflect large amounts of solar radiation back into space. However they are difficult to simulate in global climate models because they form under a sharp inversion and are thin. A comparison of model simulations with the ECHAM6-HAM2 global aerosol climate model to observations, reanalysis and literature data revealed too strong turbulent mixing at the top of stratocumulus clouds and a lack of vertical resolution. Further reasons for cloud biases in stratocumulus regions are the too "active" shallow convection scheme, the cloud cover scheme and possibly too low subsidence rates. To address some of these issues and improve the representation of stratocumulus clouds, we made three distinct changes to ECHAM6-HAM2. With a "sharp" stability function in the turbulent mixing scheme we have observed, similar to previous studies, increases in stratocumulus cloud cover and liquid water path. With an increased vertical resolution in the lower troposphere in ECHAM6-HAM2 the stratocumulus clouds form higher up in the atmosphere and their vertical extent agrees better with reanalysis data. The recently implemented in-cloud aerosol processing in stratiform clouds is used to improve the aerosol representation in the model. Including the improvements also affects the anthropogenic aerosol effect. In-cloud aerosol processing in ECHAM6-HAM2 leads to a decrease in the anthropogenic aerosol effect in the global annual mean from −1.19 Wm−2 in the reference simulation to −1.08 Wm−2, while using a "sharp" stability function leads to an increase to −1.34 Wm−2. The results from the simulations with increased vertical resolution are diverse but increase the anthropogenic aerosol effect to −2.08 Wm−2 at 47 levels and −2.30 Wm−2 at 95 levels

Long-range crystalline nature of the skyrmion lattice in MnSi

We report small angle neutron scattering of the skyrmion lattice in MnSi using an experimental set-up that minimizes the effects of demagnetizing fields and double scattering. Under these conditions the skyrmion lattice displays resolution-limited Gaussian rocking scans that correspond to a magnetic correlation length in excess of several hundred {\mu}m. This is consistent with exceptionally well-defined long-range order. We further establish the existence of higher-order scattering, discriminating parasitic double-scattering with Renninger scans. The field and temperature dependence of the higher-order scattering arises from an interference effect. It is characteristic for the long-range crystalline nature of the skyrmion lattice as shown by simple mean field calculations.Comment: 4 page

How important are future marine and shipping aerosol emissions in a warming Arctic summer and autumn?

Future sea ice retreat in the Arctic in summer and autumn is expected to affect both natural and anthropogenic aerosol emissions: sea ice acts as a barrier between the ocean and the atmosphere, and reducing it increases dimethyl sulfide and sea salt emissions. Additionally, a decrease in the area and thickness of sea ice could lead to enhanced Arctic ship traffic, for example due to shorter routes of cargo ships. Changes in the emissions of aerosol particles can then influence cloud properties, precipitation, surface albedo, and radiation. Next to changes in aerosol emissions, clouds will also be affected by increases in Arctic temperatures and humidities. In this study, we quantify how future aerosol radiative forcings and cloud radiative effects might change in the Arctic in late summer (July–August) and early autumn (September–October). Simulations were conducted for the years 2004 and 2050 with the global aerosol–climate model ECHAM6-HAM2. For 2050, simulations with and without additional ship emissions in the Arctic were carried out to quantify the impact of these emissions on the Arctic climate. In the future, sea salt as well as dimethyl sulfide emissions and burdens will increase in the Arctic. The increase in cloud condensation nuclei, which is due to changes in aerosol particles and meteorology, will enhance cloud droplet number concentrations over the Arctic Ocean (+10 % in late summer and +29 % in early autumn; in-cloud values averaged between 75 and 90∘ N). Furthermore, both liquid and total water path will increase (+10 % and +8 % in late summer; +34 % and +26 % in early autumn) since the specific humidity will be enhanced due to higher temperatures and the exposure of the ocean's surface. Changes in both aerosol radiative forcings and cloud radiative effects at the top of the atmosphere will not be dominated by the aerosol particles and clouds themselves but by the decrease in surface albedo (and by the increase in surface temperature for the longwave cloud radiative effect in early autumn). Mainly due to the reduction in sea ice, the aerosol radiative forcing will become less positive (decreasing from 0.53 to 0.36 W m−2 in late summer and from 0.15 to 0.11 W m−2 in early autumn). The decrease in sea ice is also mainly responsible for changes in the net cloud radiative effect, which will become more negative in late summer (changing from −36 to −46 W m−2). Therefore, the cooling component of both aerosols and clouds will gain importance in the future. We found that future Arctic ship emissions related to transport and oil and gas extraction (Peters et al., 2011) will not have a large impact on clouds and radiation: changes in aerosols only become significant when we increase these ship emissions by a factor of 10. However, even with 10-fold ship emissions, the net aerosol radiative forcing shows no significant changes. Enhanced black carbon deposition on snow leads to a locally significant but very small increase in radiative forcing over the central Arctic Ocean in early autumn (no significant increase for average between 75 and 90∘ N). Furthermore, the 10-fold higher ship emissions increase the optical thickness and lifetime of clouds in late summer (net cloud radiative effect changing from −48 to −52 W m−2). These aerosol–cloud effects have a considerably larger influence on the radiative forcing than the direct effects of particles (both aerosol particles in the atmosphere and particles deposited on snow). In summary, future ship emissions of aerosols and their precursor gases might have a net cooling effect, which is small compared to other changes in future Arctic climate such as those caused by the decrease in surface albedo

Comparison of commercial DNA preparation kits for the detection of Brucellae in tissue using quantitative real-time PCR

<p>Abstract</p> <p>Background</p> <p>The detection of Brucellae in tissue specimens using PCR assays is difficult because the amount of bacteria is usually low. Therefore, optimised DNA extraction methods are critical. The aim of this study was to assess the performance of commercial kits for the extraction of <it>Brucella </it>DNA.</p> <p>Methods</p> <p>Five kits were evaluated using clinical specimens: QIAamp™ DNA Mini Kit (QIAGEN), peqGold™ Tissue DNA Mini Kit (PeqLab), UltraClean™ Tissue and Cells DNA Isolation Kit (MoBio), DNA Isolation Kit for Cells and Tissues (Roche), and NucleoSpin™ Tissue (Macherey-Nagel). DNA yield was determined using a quantitative real-time PCR assay targeting IS<it>711 </it>that included an internal amplification control.</p> <p>Results</p> <p>Kits of QIAGEN and Roche provided the highest amount of DNA, Macherey-Nagel and Peqlab products were intermediate whereas MoBio yielded the lowest amount of DNA. Differences were significant (p < 0.05) and of diagnostic relevance. Sample volume, elution volume, and processing time were also compared.</p> <p>Conclusions</p> <p>We observed differences in DNA yield as high as two orders of magnitude for some samples between the best and the worst DNA extraction kits and inhibition was observed occasionally. This indicates that DNA purification may be more relevant than expected when the amount of DNA in tissue is very low.</p

Regularized Linear Inversion with Randomized Singular Value Decomposition

In this work, we develop efficient solvers for linear inverse problems based on randomized singular value decomposition (RSVD). This is achieved by combining RSVD with classical regularization methods, e.g., truncated singular value decomposition, Tikhonov regularization, and general Tikhonov regularization with a smoothness penalty. One distinct feature of the proposed approach is that it explicitly preserves the structure of the regularized solution in the sense that it always lies in the range of a certain adjoint operator. We provide error estimates between the approximation and the exact solution under canonical source condition, and interpret the approach in the lens of convex duality. Extensive numerical experiments are provided to illustrate the efficiency and accuracy of the approach.Comment: 20 pages, 4 figure

Challenges in constraining anthropogenic aerosol effects on cloud radiative forcing using present-day spatiotemporal variability

This is the final version. Available from National Academy of Sciences via the DOI in this recordA large number of processes are involved in the chain from emissions of aerosol precursor gases and primary particles to impacts on cloud radiative forcing. Those processes are manifest in a number of relationships that can be expressed as factors dlnX/dlnY driving aerosol effects on cloud radiative forcing. These factors include the relationships between cloud condensation nuclei (CCN) concentration and emissions, droplet number and CCN concentration, cloud fraction and droplet number, cloud optical depth and droplet number, and cloud radiative forcing and cloud optical depth. The relationship between cloud optical depth and droplet number can be further decomposed into the sum of two terms involving the relationship of droplet effective radius and cloud liquid water path with droplet number. These relationships can be constrained using observations of recent spatial and temporal variability of these quantities. However, we are most interested in the radiative forcing since the preindustrial era. Because few relevant measurements are available from that era, relationships from recent variability have been assumed to be applicable to the preindustrial to present-day change. Our analysis of Aerosol Comparisons between Observations and Models (AeroCom) model simulations suggests that estimates of relationships from recent variability are poor constraints on relationships from anthropogenic change for some terms, with even the sign of some relationships differing in many regions. Proxies connecting recent spatial/temporal variability to anthropogenic change, or sustained measurements in regions where emissions have changed, are needed to constrain estimates of anthropogenic aerosol impacts on cloud radiative forcing.The Pacific Northwest National Laboratory (PNNL) is operated for the Department of Energy (DOE) by Battelle Memorial Institute under Contract DE-AC06-76RLO 1830. Work at PNNL was supported by the US DOE Decadal and Regional Climate Prediction using Earth System Models program and by the US DOE Earth System Modeling program. Work of M.W. and S.Z. performed at Nanjing University was supported by the One Thousand Young Talent Program, Jiangsu Province Specially-Appointed Professor Grant, and the National Natural Science Foundation of China (41575073). A portion of this research was performed using PNNL Institutional Computing resources. The ECHAM6-HAM model was developed by a consortium composed of ETH Zurich, Max Planck Institut für Meteorologie, Forschungszentrum Jülich, University of Oxford, the Finnish Meteorological Institute, and the Leibniz Institute for Tropospheric Research, and is managed by the Center for Climate Systems Modeling (C2SM) at ETH Zurich. D.N. acknowledges support by the Austrian Science Fund (J 3402-N29, Erwin Schrödinger Fellowship Abroad). C2SM at ETH Zurich is acknowledged for providing technical and scientific support. This work was also supported by a grant from the Swiss National Supercomputing Centre under Project ID s431. D.G.P. and P.S. acknowledge support from the United Kingdom (UK) Natural Environment Research Council Grant NE/I020148/1. P.S. and Z.K. acknowledge funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP7/2007–2013) ERC project ACCLAIM (Grant Agreement FP7-280025). The development of modal version of the GLObal Model of Aerosol Processes (GLOMAP-mode) within Hadley Center Global Environmental Mode (HadGEM) is part of the United Kingdom Chemistry and Aerosols (UKCA) project, which is supported by both National Environmental Research Council (NERC) and the Joint Department of Energy & Climate Change/Department for Environment, Food & Rural Affairs Meteorology Office Hadley Centre Climate Programme. We acknowledge use of the Met Office and NERC MONSooN high performance computing system, a collaborative facility supplied under the Joint Weather and Climate Research Programme, a strategic partnership between the Met Office and the NERC. Simulations by SPRINTARS were executed with the supercomputer system SX-9/ACE of the National Institute for Environmental Studies, Japan. SPRINTARS is partly supported by the Environment Research and Technology Development Fund (S-12-3) of the Ministry of the Environment, Japan and Japan Society for the Promotion of Science KAKENHI Grants-in-Aid for Scientific Research 15H01728 and 15K12190. Computing resources for CAM5-MG2 simulations were provided by the Climate Simulation Laboratory at National Center for Atmospheric Research (NCAR) Computational and Information Systems Laboratory. NCAR is sponsored by the US National Science Foundation

Additional global climate cooling by clouds due to ice crystal complexity

Ice crystal submicron structures have a large impact on the optical properties of cirrus clouds and consequently on their radiative effect. Although there is growing evidence that atmospheric ice crystals are rarely pristine, direct in situ observations of the degree of ice crystal complexity are largely missing. Here we show a comprehensive in situ data set of ice crystal complexity coupled with measurements of the cloud angular scattering functions collected during a number of observational airborne campaigns at diverse geographical locations. Our results demonstrate that an overwhelming fraction (between 61 % and 81 %) of atmospheric ice crystals sampled in the different regions contain mesoscopic deformations and, as a consequence, a similar flat and featureless angular scattering function is observed. A comparison between the measurements and a database of optical particle properties showed that severely roughened hexagonal aggregates optimally represent the measurements in the observed angular range. Based on this optical model, a new parameterization of the cloud bulk asymmetry factor was introduced and its effects were tested in a global climate model. The modelling results suggest that, due to ice crystal complexity, ice-containing clouds can induce an additional short-wave cooling effect of −1.12 W m2 on the top-of-the-atmosphere radiative budget that has not yet been considered