Plan of Action for Strengthening Global Agricultural Research: The NARS Perspective

Plan for strengthening partnerships and collaboration in international agricultural research presented at the first meeting of the Global Forum on Agricultural Research (GFAR), held during CGIAR International Centers Week, October-November 1996. The document was prepared by a working group composed of representatives of regional fora held in Asia and the Pacific, Latin America and the Caribbean, Sub Saharan Africa, and West Asia and North Africa. It included a summary of the action plans that emerged from each of the regional meetings.The plan of action culminated a process of discussion which began at IFAD in December 1994. It was presented during GFAR's consideration of the operational dimensions of strengthening global partnerships and was an input to discussions leading to a Declaration and Action Plan for Global Partnerships in Agricultural Research. The paper concludes with a NARS contribution to the declaration of global partnership in agricultural research

NARS-CGIAR Partnership Initiative

Report presented at MTM96 on the progress of consultations among NARS on relationships with the CGIAR following approval of a proposed outline action plan at ICW95. The update includes a summary of action taken at ICW95, a review of regional fora of NARS held December 1995 through March 1996, and a report on a meeting of facilitating donor agencies in March 1996. It notes that the preparation of a framework paper has been delayed to permit greater involvement of NARS in the process. Attached to the report is the original Outline Action Plan prepared by members of a NARS working group set up at an IFAD-sponsored consultation held at the CGIAR Mid Term Meeting, May 1995. This plan was endorsed at the CGIAR meeting in October-November 1995.Appendixes to the action plan include: an earlier progress report dated November 1995, with an agenda for regional fora and a budget for external support; a statement by European Donors at ICW1995; a background paper presented by the German Delegation at ICW95; and a description of regional fora that existed or were being developed

Caractérisation structurale et perception par la plante hôte Medicago truncatula des chitosaccharides pariétaux d'Aphanomyces euteiches, parasite de légumineuses

Aphanomyces euteiches est un oomycète parasite racinaire des légumineuses causant des pertes de rendement récurrentes. La paroi d'A.euteiches contient 10% de N-acétylglucosamine (NAG) sous la forme de chitosaccharides non cristallins, associés aux glucanes pariétaux. Afin de pouvoir étudier leur activité biologique, un bioessai d'élicitation du système racinaire de la plante hôte Medicago truncatula a été mis au point en utilisant une préparation de fragments de chitine comme éliciteur témoin. La purification de fractions de parois hydrolysées, enrichies en NAG, a donné des fragments de glycanes composés de glucose et de NAG. Ces hétéropolymères présentent une structure nouvelle jamais décrite à ce jour. Le bioessai d'élicitation racinaire a révélé une activité biologique des fractions de paroi différente de celle des fragments de chitine chez M.truncatula. De façon intéressante, l'une des fractions induit des oscillations calciques nucléaires dans les cellules épidermiques de cultures de racines de M.truncatula, qui sont différentes de la réponse provoquée par des chitotétramères purs.The oomycete Aphanomyces euteiches is a root pathogen infecting legumes which causes important yield losses. The cell wall of A.euteiches contains 10% N-acetylglucosamine (NAG) in the form of non-crystalline chitosaccharides, which are associated to cell wall glucans. To study their biological activity, a root elicitation bioassay on the host plant Medicago truncatula has been set up using a preparation of chitin fragments as a control elicitor. The purification of hydrolysed cell wall fractions enriched in NAG yielded glycan fragments which were composed of glucose and NAG. These heteropolymers possess a novel structure, which has never been described before. The root elicitation bioassay showed a biological activity of the cell wall fractions different from the one of chitin fragments, on M.truncatula. Interestingly, one fraction induced nuclear calcium oscillations in epidermal cells of M.truncatula root cultures, which are different from the response evoked by pure chitotetramers

Dynamique fonctionnelle des protéines: études d'une lipase et d'une protéine A de la membrane externe de bactérie.

Understanding the function of proteins and biological systems requires an accurate knowledge of the underlying molecular mechanisms. Crystallography and nuclear magnetic resonance provide a detailed description of these mechanisms, with an atomic resolution, by providing data on both structures and motions. We investigated two proteins, the lip2 lipase from the yeast Yarrowia lipolytica and the membrane protein OmpA from the bacteria Klebsiella pneumoniae. We tried to produce lip2 with uniform and amino-acid specific stable isotope labelling on its functional loop (the lid) for NMR experiments. The homologous recombinant expression in Yarrowia lipolytica turned out to be the most efficient for uniform labelling but failed for specific labelling due to extensive isotope scrambling. We solved the structure of OmpA C-terminal domain by X-ray crystallography, and analyzed its dynamics in solution by NMR (15N relaxation techniques). We characterized its transmembrane N-terminal domain in proteoliposomes by solid state NMR: using state of the art ultra-fast MAS (60 kHz), 1H detection and a 1 GHz spectrometer, we could assign most β-barrel resonances and establish a NH order parameter profile. In a complementary approach, we used proteolysis to reveal a unique trypsin cleavage site on the extracellular loop 3. Finally, a first characterization of the full-length protein expressed in the outer membrane of Escherichia coli was initiated by solid state NMR on intact outer membranes.La compréhension de la fonction des protéines et des systèmes biologiques passe par une connaissance fine des mécanismes moléculaires sous-jacents. La cristallographie et la résonance magnétique nucléaire permettent d’appréhender ces mécanismes au niveau atomique en fournissant des informations sur la structure et sur la dynamique des macromolécules biologiques. Nous nous sommes ainsi intéressés à deux protéines, la lipase lip2 de la levure Yarrowia lipolytica et la protéine membranaire OmpA de la bactérie Klebsiella pneumoniae. Nous avons recherché des conditions d’expression de la protéine lip2 marquée uniformément ou spécifiquement sur une boucle (appelée « lid ») afin d’en étudier la dynamique. Des conditions de marquage uniforme à l’azote 15 de lip2 recombinante dans Yarrowia lipolytica ont été mises au point, mais le marquage acide aminé spécifique n’a pu être réalisé à cause de phénomènes de dilution isotopique trop importants dans cette levure. Nous avons résolu par cristallographie aux rayons X la structure du domaine C-terminal de la protéine OmpA et étudié sa dynamique en solution par RMN (techniques de relaxation 15N). Nous avons caractérisé la dynamique de son domaine N-terminal membranaire reconstitué en liposomes par RMN du solide : en utilisant la rotation à l’angle magique à 60kHz et à la détection 1H sur un spectromètre 1 GHz, nous avons pu attribuer une majorité des résonances du tonneau β et établir un profil de paramètre d’ordre des vecteurs NH. Des expériences de protéolyse ménagée ont révélé par ailleurs un site de coupure unique à la trypsine au sein de la boucle extracellulaire L3. Enfin, une première caractérisation de la protéine complète exprimée dans la membrane externe d’Escherichia coli a été entreprise par RMN du solide sur membranes externes natives

Efficacy of a strategy to prevent neonatal early-onset group B streptococcal (GBS) sepsis

Background: Existing guidelines recommend different strategies to prevent early-onset neonatal GBS sepsis. In 1997, using our own data on incidence and risk factors, we established a new prevention strategy which includes GBS screening at 36 weeks' gestation and intrapartum antibiotic prophylaxis (IAP) in women with positive or unknown GBS colonization with at least one risk factor. The present study evaluates the efficacy of the new prevention strategy. Methods: Retrospective study of the incidence of early-onset GBS sepsis among all live births at the University Women's Hospital Basel between 1997 and 2002. Additional analysis of delivery and post partum period of all GBS sepsis cases, including GBS screening, risk factors during labor (prematurity, rupture of membranes (ROM) <12 h, intrapartum signs of infection), and IAP. Comparison of this group's characteristics G2 (9,385 live births, using the new strategy) with the previous group, G1 (1984-1993, 16,126 live births, without GBS screening or routine IAP) was performed. Results: The incidence of early-onset GBS sepsis was reduced from 1/1000 (G1) to 0.53/1000 (G2). We observed a significant reduction of overall intrapartum riskfactors in cases of GBS sepsis. Conclusion: This study suggests that our new prevention strategy is effective in reducing the incidence of early-onset GBS sepsis in neonates. In comparison, implementation of the CDC's prevention strategy might have prevented 2 additional cases in 9385 live births. However, this would have required treating a much larger number of pregnant women with IAP with consequential increasing costs, side effects and complication

Aphanomyces euteiches Cell Wall Fractions Containing Novel Glucan-Chitosaccharides Induce Defense Genes and Nuclear Calcium Oscillations in the Plant Host Medicago truncatula

[EN] N-acetylglucosamine-based saccharides (chitosaccharides) are components of microbial cell walls and act as molecular signals during host-microbe interactions. In the legume plant Medicago truncatula, the perception of lipochitooligosaccharide signals produced by symbiotic rhizobia and arbuscular mycorrhizal fungi involves the Nod Factor Perception (NFP) lysin motif receptor-like protein and leads to the activation of the so-called common symbiotic pathway. In rice and Arabidopsis, lysin motif receptors are involved in the perception of chitooligosaccharides released by pathogenic fungi, resulting in the activation of plant immunity. Here we report the structural characterization of atypical chitosaccharides from the oomycete pathogen Aphanomyces euteiches, and their biological activity on the host Medicago truncatula. Using a combination of biochemical and biophysical approaches, we show that these chitosaccharides are linked to β-1,6-glucans, and contain a β-(1,3;1,4)-glucan backbone whose β-1,3-linked glucose units are substituted on their C-6 carbon by either glucose or N-acetylglucosamine residues. This is the first description of this type of structural motif in eukaryotic cell walls. Glucan-chitosaccharide fractions of A. euteiches induced the expression of defense marker genes in Medicago truncatula seedlings independently from the presence of a functional Nod Factor Perception protein. Furthermore, one of the glucan-chitosaccharide fractions elicited calcium oscillations in the nucleus of root cells. In contrast to the asymmetric oscillatory calcium spiking induced by symbiotic lipochitooligosaccharides, this response depends neither on the Nod Factor Perception protein nor on the common symbiotic pathway. These findings open new perspectives in oomycete cell wall biology and elicitor recognition and signaling in legumes.SIThis work is part of the “Laboratoire d’Excellence” (LABEX) entitled TULIP (ANR -10-LABX-41); it was funded by the Région Midi-Pyrénées, the CNRS (PhD grant INEE 36 to AN), and the French Agence Nationale de la Recherche (ANR-08-BLAN-0208-01 “Sympasignal”)

Anion channel SLAH3 is a regulatory target of chitin receptor-associated kinase PBL27 in microbial stomatal closure

In plants, antimicrobial immune responses involve the cellular release of anions and are responsible for the closure of stomatal pores. Detection of microbe-associated molecular patterns (MAMPs) by pattern recognition receptors (PRRs) induces currents mediated via slow-type (S-type) anion channels by a yet not understood mechanism. Here, we show that stomatal closure to fungal chitin is conferred by the major PRRs for chitin recognition, LYK5 and CERK1, the receptor-like cytoplasmic kinase PBL27, and the SLAH3 anion channel. PBL27 has the capacity to phosphorylate SLAH3, of which S127 and S189 are required to activate SLAH3. Full activation of the channel entails CERK1, depending on PBL27. Importantly, both S127 and S189 residues of SLAH3 are required for chitin-induced stomatal closure and anti-fungal immunity at the whole leaf level. Our results demonstrate a short signal transduction module from MAMP recognition to anion channel activation, and independent of ABA-induced SLAH3 activation

PTB Domain-Directed Substrate Targeting in a Tyrosine Kinase from the Unicellular Choanoflagellate Monosiga brevicollis

Choanoflagellates are considered to be the closest living unicellular relatives of metazoans. The genome of the choanoflagellate Monosiga brevicollis contains a surprisingly high number and diversity of tyrosine kinases, tyrosine phosphatases, and phosphotyrosine-binding domains. Many of the tyrosine kinases possess combinations of domains that have not been observed in any multicellular organism. The role of these protein interaction domains in M. brevicollis kinase signaling is not clear. Here, we have carried out a biochemical characterization of Monosiga HMTK1, a protein containing a putative PTB domain linked to a tyrosine kinase catalytic domain. We cloned, expressed, and purified HMTK1, and we demonstrated that it possesses tyrosine kinase activity. We used immobilized peptide arrays to define a preferred ligand for the third PTB domain of HMTK1. Peptide sequences containing this ligand sequence are phosphorylated efficiently by recombinant HMTK1, suggesting that the PTB domain of HMTK1 has a role in substrate recognition analogous to the SH2 and SH3 domains of mammalian Src family kinases. We suggest that the substrate recruitment function of the noncatalytic domains of tyrosine kinases arose before their roles in autoinhibition