Correction of the fringe order errors for fringe projection profilometry

Non-contact three-dimensional (abbreviated as 3D) Fringe projection profilometry (abbreviated as FPP) counts as a method of reconstructing the shape of object surface. This technique has been extensively used in many areas, e.g. computer vision, biomedical research, industrial applications, and virtual reality. Using a FPP, sinusoidal patterns are projected on the object surface by mean of a digital projector, and subsequently a camera captures the reflected patterns deformed by the object surface. As the shape information of the object surface is carried by the deformed patterns, the 3D profile can be retrieved through analysing these patterns. The phase unwrapping is a primary issue bound by the existing phase unwrapping techniques in FPP, aiming to recover the absolute phase from wrapped phase. The temporal phase unwrapping with multi-frequency fringe pattern was proposed, prominently advantaged by none-error propagation. Furthermore, the fringe order is deemed as the critical property to retrieve the absolute phase

Methodology for Estimating the Lifelong Exposure to PM2.5 and NO2 - The Application to European Population Subgroups

Health impacts of air pollutants, especially fine particles (PM2.5) and NO2, have been documented worldwide by epidemiological studies. Most of the existing studies utilised the concentration measured at the ambient stations to represent the pollutant inhaled by individuals. However, these measurement data are in fact not able to reflect the real concentration a person is exposed to since people spend most of their time indoors and are also affected by indoor sources. The authors developed a probabilistic methodology framework to simulate the lifelong exposure to PM2.5 and NO2 simultaneously for population subgroups that are characterised by a number of indicators such as age, gender and socio-economic status. The methodology framework incorporates the methods for simulating the long-term outdoor air quality, the pollutant concentration in different micro-environments, the time-activity pattern of population subgroups and the retrospective life course trajectories. This approach was applied to the population in the EU27 countries plus Norway and Switzerland and validated with the measurement data from European multi-centre study, EXPOLIS. Results show that the annual average exposure to PM2.5 and NO2 at European level kept increasing from the 1950s to a peak between the 1980s and the 1990s and showed a decrease until 2015 due to the implementation of a series of directives. It is also revealed that the exposure to both pollutants was affected by geographical location, gender and income level. The average annual exposure over the lifetime of an 80-year-old European to PM2.5 and NO2 amounted to 23.86 (95% CI: 2.95-81.86) and 13.49 (95% CI: 1.36-43.84) µg/m3. The application of this methodology provides valuable insights and novel tools for exposure modelling and environmental studies

Exposure of Individuals in Europe to Air Pollution and Related Health Effects

Air pollutants, especially PM2.5 and NO2, are associated with adverse health impacts, as shown by numerous epidemiological studies. In these studies, the observed health impacts have been correlated with ambient concentrations, mainly taken from air pollution monitoring stations. However, individuals are harmed by the pollutants in the inhaled air at the places where they stay, and thus, the concentration of pollutants in the inhaled air is obviously a better indicator for health impacts than the ambient concentration at a monitoring station. Furthermore, the current method for estimating the occurrence of chronic diseases uses annual average concentrations as indicator. However, according to current hypotheses, chronic diseases, especially chronic mortality, develop through the exposure to pollutants over many years, maybe up to a full lifetime. Thus in this study, a methodology and a computer-aided probabilistic model system are described for calculating the exposure of a person to PM2.5 and NO2 over the whole lifetime where the person is characterized by attributes such as age, gender, place of residence and work as well as socioeconomic status. The model system contains a "life course trajectory model", which estimates the course of the education and professional development for the past lifetime of a person, whose present socioeconomic status is known. Furthermore, a "time-activity model" estimates at which places (so-called micro-environments) a person with a certain socioeconomic status stayed and how long he stayed there within a certain year. The concentrations of air pollutants in indoor environments are calculated with a "mass-balance model", the outdoor concentrations with "atmospheric models". Finally, the results of these models are combined to estimate the annual average exposure for the life years of individuals and population subgroups. The exposure is then used to estimate and monetize health impacts. The exposures and health impacts for a number of population subgroups in Europe are presented. For instance, a European citizen, who was 70 years old in 2015, has been exposed to around 25 μg/m3 of PM2.5 during his lifetime above the age of 30, which is associated with a reduction of life expectancy of 13.4 days per year of exposure above 30

Processing of Individual Items during Ensemble Coding of Facial Expressions

There is growing evidence that human observers are able to extract the mean emotion or other type of information from a set of faces. The most intriguing aspect of this phenomenon is that observers often fail to identify or form a representation for individual faces in a face set. However, most of these results were based on judgments under limited processing resource. We examined a wider range of exposure time and observed how the relationship between the extraction of a mean and representation of individual facial expressions would change. The results showed that with an exposure time of 50 ms for the faces, observers were more sensitive to mean representation over individual representation, replicating the typical findings in the literature. With longer exposure time, however, observers were able to extract both individual and mean representation more accurately. Furthermore, diffusion model analysis revealed that the mean representation is also more prone to suffer from the noise accumulated in redundant processing time and leads to a more conservative decision bias, whereas individual representations seem more resistant to this noise. Results suggest that the encoding of emotional information from multiple faces may take two forms: single face processing and crowd face processi

Genetic and physical interaction of Meis2, Pax3 and Pax7 during dorsal midbrain development

<p>Abstract</p> <p>Background</p> <p>During early stages of brain development, secreted molecules, components of intracellular signaling pathways and transcriptional regulators act in positive and negative feed-back or feed-forward loops at the mid-hindbrain boundary. These genetic interactions are of central importance for the specification and subsequent development of the adjacent mid- and hindbrain. Much less, however, is known about the regulatory relationship and functional interaction of molecules that are expressed in the tectal anlage after tectal fate specification has taken place and tectal development has commenced.</p> <p>Results</p> <p>Here, we provide experimental evidence for reciprocal regulation and subsequent cooperation of the paired-type transcription factors <it>Pax3, Pax7 </it>and the TALE-homeodomain protein <it>Meis2 </it>in the tectal anlage. Using in ovo electroporation of the mesencephalic vesicle of chick embryos we show that (i) <it>Pax3 </it>and <it>Pax7 </it>mutually regulate each other's expression in the mesencephalic vesicle, (ii) <it>Meis2 </it>acts downstream of <it>Pax3/7 </it>and requires balanced expression levels of both proteins, and (iii) Meis2 physically interacts with Pax3 and Pax7. These results extend our previous observation that <it>Meis2 </it>cooperates with <it>Otx2 </it>in tectal development to include Pax3 and Pax7 as Meis2 interacting proteins in the tectal anlage.</p> <p>Conclusion</p> <p>The results described here suggest a model in which interdependent regulatory loops involving <it>Pax3 </it>and <it>Pax7 </it>in the dorsal mesencephalic vesicle modulate <it>Meis2 </it>expression. Physical interaction with Meis2 may then confer tectal specificity to a wide range of otherwise broadly expressed transcriptional regulators, including Otx2, Pax3 and Pax7.</p

Integration of scRNA-Seq and bulk RNA-Seq uncover perturbed immune cell types and pathways of Kawasaki disease

IntroductionKawasaki disease (KD) is an acute febrile illness primarily affecting children and characterized by systemic inflammation and vasculitis that can lead to coronary artery complications. The aim of this study was to gain a comprehensive understanding of immune dysregulation in KD.MethodsTo this end, we employed integration of single-cell RNA sequencing (scRNA-Seq) and bulk RNA sequencing (bulk RNA-Seq) data. Furthermore, we conducted flow cytometry analysis for a cohort of 82 KD patients.ResultsOur analysis revealed significant heterogeneity within immune cell populations in KD patients, with distinct clusters of T cells, B cells, and natural killer (NK) cells. Importantly, CD4+ naïve T cells in KD patients were found to predominantly differentiate into Treg cells and Th2 cells, potentially playing a role in the excessive inflammation and vascular damage characteristic of the disease. Dysregulated signaling pathways were also identified, including the mTOR signaling pathway, cardiomyopathy pathway, COVID-19 signaling pathway, and pathways involved in bacterial or viral infection.DiscussionThese findings provide insights into the immunopathogenesis of KD, emphasizing the importance of immune cell dysregulation and dysregulated signaling pathways. Integration of scRNA-Seq and bulk RNA-Seq data offers a comprehensive view of the molecular and cellular alterations in KD and highlights potential therapeutic targets for further investigation. Validation and functional studies are warranted to elucidate the roles of the identified immune cell types and pathways in KD pathogenesis and to develop targeted interventions to improve patient outcomes

Circulating tumor DNA clearance predicts prognosis across treatment regimen in a large real-world longitudinally monitored advanced non-small cell lung cancer cohort

Background: Although growth advantage of certain clones would ultimately translate into a clinically visible disease progression, radiological imaging does not reflect clonal evolution at molecular level. Circulating tumor DNA (ctDNA), validated as a tool for mutation detection in lung cancer, could reflect dynamic molecular changes. We evaluated the utility of ctDNA as a predictive and a prognostic marker in disease monitoring of advanced non-small cell lung cancer (NSCLC) patients.Methods: This is a multicenter prospective cohort study. We performed capture-based ultra-deep sequencing on longitudinal plasma samples utilizing a panel consisting of 168 NSCLC-related genes on 949 advanced NSCLC patients with driver mutations to monitor treatment responses and disease progression. The correlations between ctDNA and progression-free survival (PFS)/overall survival (OS) were performed on 248 patients undergoing various treatments with the minimum of 2 ctDNA tests.Results: The results of this study revealed that higher ctDNA abundance (P=0.012) and mutation count (P=8.5x10(-4)) at baseline are associated with shorter OS. We also found that patients with ctDNA clearance, not just driver mutation clearance, at any point during the course of treatment were associated with longer PFS (P=2.2x10(-1)6, HR 0.28) and OS (P=4.5x10(-6), HR 0.19) regardless of type of treatment and evaluation schedule.Conclusions: This prospective real-world study shows that ctDNA clearance during treatment may serve as predictive and prognostic marker across a wide spectrum of treatment regimens

Roadmap on printable electronic materials for next-generation sensors

The dissemination of sensors is key to realizing a sustainable, ‘intelligent’ world, where everyday objects and environments are equipped with sensing capabilities to advance the sustainability and quality of our lives—e.g., via smart homes, smart cities, smart healthcare, smart logistics, Industry 4.0, and precision agriculture. The realization of the full potential of these applications critically depends on the availability of easy-to-make, low-cost sensor technologies. Sensors based on printable electronic materials offer the ideal platform: they can be fabricated through simple methods (e.g., printing and coating) and are compatible with high-throughput roll-to-roll processing. Moreover, printable electronic materials often allow the fabrication of sensors on flexible/stretchable/biodegradable substrates, thereby enabling the deployment of sensors in unconventional settings. Fulfilling the promise of printable electronic materials for sensing will require materials and device innovations to enhance their ability to transduce external stimuli—light, ionizing radiation, pressure, strain, force, temperature, gas, vapours, humidity, and other chemical and biological analytes. This Roadmap brings together the viewpoints of experts in various printable sensing materials—and devices thereof—to provide insights into the status and outlook of the field. Alongside recent materials and device innovations, the roadmap discusses the key outstanding challenges pertaining to each printable sensing technology. Finally, the Roadmap points to promising directions to overcome these challenges and thus enable ubiquitous sensing for a sustainable, ‘intelligent’ world

Long-term exposure of European population subgroups to PM2.5 and NO2

Numerous epidemiological studies have demonstrated the damaging influence of air pollutants on human health. However, the environmental health studies up to now use urban background concentrations in the ambient air to estimate the health risks, while the inhalation of toxic substances, i.e. the concentration of pollutants, where the exposed person breathes, is the relevant indicator for estimating the health impacts. The main objective of this thesis is to assess the long-term exposure to fine particles and nitrogen dioxide for different European subgroups that are characterised by certain features including age, gender, region and socio-economic status. The exposure simulation is realised by developing a probabilistic model that incorporates an air quality model for estimating the ambient pollutant concentration, a mass-balance model for assessing the concentration of indoor micro-environments and a life course trajectory model for predicting retrospectively the transition between socio-economic states. The results of the exposure modelling are subsequently incorporated with exposure response functions (ERFs), aggregation factors and monetary values to assess health impacts and damage costs

Die dorsoventrale Differenzierung und Spezifikation des frühen embryonalen Hühnermittelhirn

The chick midbrain is subdivided into functionally distinct ventral and dorsal domains, tegmentum and optic tectum. In the mature tectum, neurons are organized in layers, while they form discrete nuclei in the tegmentum. An interesting characteristic of the embryonic brain is the development of a large optic tectum, of which the growth becomes obvious at embryonic day 3 (E3). Dorsoventral (DV) specification of the early midbrain should thus play a crucial role for the organization of the neuronal circuitry in optic tectum and tegmentum. In the first part of my thesis, I investigated regional commitment and establishment of cellular differences along the midbrain DV axis. I examined the commitment of gene expression patterns in isolated ventral and dorsal tissue in vivo and in vitro, and studied their cell mixing properties. Explant cultures, and grafting of dorsal midbrain into a ventral environment or vice versa, revealed a gradual increase in the autonomy of region-specific gene regulation between, which was accompanied by a gradual increase in differential adhesive properties from E2 to E3, once the DV axis polarity was fixed. These events happened at a time-point when the majority of midbrain cells are not yet differentiated. Long-term transplantation (6 - 9 days) using quail cells from ventral midbrain as grafts showed the same result. Hence, the results suggest that progressive specification of the midbrain DV axis is accompanied by progressively reduced cell mixing between dorsal and ventral precursors, leading to a partial regionalization of midbrain tissue into autonomous units of precursor cell populations. In the second part I investigated the genes that might be involved in regulating the growth of the tectum. In particular, I focused on the role of Pax7 transcription factor, a paired domain protein. The results suggested that Pax7 was involved in regulating the medial-lateral extension of the tectum. Over expression of Pax7 in dorsal midbrain led to an enlarged tectum accompanied by a raise in cell division, while Pax7 knockdown by shrank caused a reduction in tectum. The overall pattern of neuronal differentiation was not disturbed by an up or down regulation of Pax7. Pax7 also positively regulated Pax3, another pair-ruled gene expressed dorsally. These results suggest that Pax7 very likely together with Pax3 could facilitate or maintain neural cell proliferation in the midbrain at early stages and that a regulation of the size in that region does not influence the neuronal patterning of the developmental field. I further checked the expression and function of a GFPase Rab 23, that was suggested to be involved in the DV patterning in mouse neural tube as a negative regulator of Shh signaling. Overexpression of Rab23 indicated that it facilitated the expression of Pax7 and Pax3 in the neural tube and suppressed ventral genes like Nkx6.1 cell autonomously, however, it did not disturb neuronal patterning. Interestingly, a thorough expression study of Rab 23 during chick early development revealed that Rab23 is already expressed very early and asymmetrically during gastrulation, suggesting a possible role of Rab23 on the left-right determination of Hensen’s node. In combination with the result that Rab23 is expressed in the notochord early in development, I assume that both Rab23 and Shh exist in all neural progenitor cells initially, and when their expression patterns separate gradually the neural cells adopt a ventral or dorsal fate according to their location along the dorsoventral axis. The avian embryo is a classic system used widely to investigate questions of vertebrate development. The easy and cheap accessibility of the embryo for in ovo or ex ovo experiments all around the year make it an ideal animal model to work with. The only recently developed method of over expressing genes in specific cells or regions in the chick embryo by electroporation enabled me to study different ways of gene suppression using this way of gene transfection. Thus, I compared the effect of long-hairpin and short hairpin dsRNA in different vectors and antisense morpholino oligonucleotides. The results revealed that all hairpin dsRNA constructs did reduce gene and protein expression often accompanied by morphological changes. Most efficiently were shRNAi constructs cloned into a siRNA-specific vector – pSilencer 1.0-U6. Gene silencing was already well observed 36 hours after transfection. In comparison antisense morpholino oligonucleotides did not show such big gene reduction as the shRNA in pSilencer. Taken together, this methodical research proposes that the shRNA in the pSilencer vector was a good and effective tool to reduce gene and protein expression locally.Das Mittelhirn des Huhns wird in funktionel unterschiedliche, ventrale und dorsale Regionen eingeteilt, nämlich das Tegmentum ventral und das optisches Tectum dorsal. Im vollentwickelten Tectum bilden Nervenzellen Schichten, während das Tegmentum aus unterschiedlichen Nuclei besteht. Ein charakteristisches Merkmal des embryonalen Gehirns ist die Entwicklung eines großen optischen Techtums, die am dritten embryonalen Tag (E3) sehr deutlich zu beobachten ist. Diese unterschiedliche funktionelle und morphologische Entwicklung des Mittelhirns deutet daraufhin, das die dorsoventrale Spezifikation des frühen Mittelhirns für der Organisation neuronaler Netzwerke im optischen Tectum und Tegmentum eine kritische Rolle spielt. Im ersten Teil dieser Doktorarbeit wurde die regionale Bestimmung und Bildung zellulärer Unterschiede entlang der DV Achse des Mittelhirns untersucht. Dafür bestimmte ich den Zeitpunkt, an dem spezifische ventrale und dorsale Genexpressionsmuster festgelegt werden in isoliertem ventralen und dorsalen Gewebe in vivo and in vitro. Desweiteren untersuchte ich die Entwicklung unterschiedlicher adhäsiver Eigenschaften von ventralen und dorsalen Zellen in vitro. Explantatkulturen und Transplantationen von dorsalem Mittelhirn in eine ventrale Umgebung oder vice versa liessen eine schrittweise Zunahme der Autonomie der region-spezifischen Genregulation erkennen. Dies wurde von einer schrittweisen Zunahme des differentialen Adhäsionsverhaltens von ventralen und dorsalen Mittelhirnzellen von E2 zu E3 begleitet, der Zeitspanne, in der die Polarität der DV Achse festgelegt wurde. Diese Entwicklungsprozesse fanden u einem Zeitpunkt statt, an dem die meisten Zellen des Mittelhirns noch nicht differenziert hatten. Transplantationen,. von ventralen Mittelhirnzellen der Wachtel ins dorsale Hühnertecctum, die erst nach mehreren Tagen (6 - 9 Tage) untersucht wurden, zeigten das gleiche Ergebnis. Diese Ergebnisse lassen schliessen, dass eine partielle Regionalisierung des Mittelhirns in autonome Einheiten von Vorläuferzellen der dorsoventralen Achse stattfindet. Dies erlaubt den Zellen eine Positionsidentität zu bewahren – unhabhängig von der wachsenden Distanz zu Signalzentren. Im zweiten Teil meiner Arbeit untersuchte ich Gene, die das Wachstum und die spezifische Entwicklung des Tectums regulieren könnten. Die Arbeit konzentrierte sich speziell auf die Rolle von Pax7, ein Mitglied der sogenannten ‚pair-ruled’ Familie von Transkriptionsfaktoren, und auf die Rolle von Rab23, einer GTPase, die den Shh-Signalweg im dorsalen Neuralrohr inhibiert. Dieser Versuch zeigte, dass Pax7 an der Regulation der medio-lateral Ausdehnung des Tectums beteiligt ist. Überexpression von Pax7 im dorsalen Mittelhirn führte zu einer Vergrößerung des Tectums, die von einer Zunahme der Zellteilung begleitet wurde, während Knockdown von Pax7 eine Größereduktion des Tectums verursachte. Das neuronale Differenzierungsmuster im generellen wurde nicht von der Überexpression oder Repression von Pax7 gestört. Pax7 induzierte ausserdem Pax3, ein Mitglied derselben Familie, das ebenfalls dorsal exprimiert wird und unterdrückte ventrale Gene wie Nkx6.1. Diese Ergebnisse lassen vermuten, dass Pax7, sehr wahrscheinlich zusammen mit Pax3, die neural Zellproliferation im Mittelhirn in frühen Entwicklungsstadien fördert oder auf einem konstanten Level hält und dass die Muster der neuronalen Entwicklung nicht durch der Regulation der Größe dieser Region beeinflusst wird. Außerdem förderte Rab 23, das sehr wahrscheinlich ein negativer Regulator von Shh ist, die Expression von Pax7 und Pax3 im ventralen Mittelhirn und unterdrückte ventrale Gene wie Nkx6.1. Die Überexpression von Rab 23 beeinflusste auch nicht das neuronale Differenzierungsmusterung. Interessanterweise zeigte eine genaue Analyse der Expression von Rab 23 während der frühen Entwicklungsstadien des Huhns, dass Rab 23 bereits sehr früh und asymmetrisch während der Gastrulation exprimiert wurde. Dies deutet auf eine mögliche Rolle von Rab 23 für die links-rechts Determination des Hensen´s node an. Betrachtet man diese Ergebnisse zusammen, dann könnte man zu fogender Schlussfolgerung kommen, nämlich, dass sowohl Rab 23 als auch Shh früh in allen neural Progenitorzellen existieren, und dass die neuralen Zellen jeweils nach ihrer Lage entlang der dorsoventral Achse ein ventrales oder dorsales Schicksal annehmen, wenn das sich die Expressionsmuster von Rab 23 und Shh allmänlich trennen. Der Vogelembryo ist ein klassisches und häufig benutztes System, um die Entwicklung der Vertebraten zu untersuchen. Die einfache und preiswerte Zugänglichkeit des Embryos für in ovo oder ex ovo Experiment das ganze Jahr über machen ihn zu einem idealen Tiermodell. Die in den letzten Jahren entwickelte Methode der Elektroporation eines Embryos zum Gentransfer in die Zellen, ermöglichte es mir unterschiedliche Weisen der Genunterdrückung in embryonalem Gewebe zu testen und zu vergleichen.Ich verglich in dieser Untersuchung die Wirkung von langen und kurzen Haarnadel-RNAs (hairpin RNA) in verschieden Vektoren mit der Wirkung von Antisense-morpholino-Oligonucleotiden verglichen. Die Ergebnisse zeigten, dass alle Haarnadel-dsRNA-Konstruktionen die Gen- und Proteinexpression reduzierten, wobei es häufig zu einer morphologischen Veränderung kam. Die kurze shRNAi-Konstruktionen, die in einen siRNA-spezifischen Vektor – pSilencer 1.0-U6 - geklont wurden war, zeigte sich dabei am effizientesten.. Die Herunterregulierung der Gene wurde bereits 36 Stunden nach der Transfektion beobachtet. Im Gegensatz dazu, zeigten die Antisense-Morpholino-Oligonucleotiden keine solche starke Reduktion wie das shRNA in pSilencer. Zusammenfassend zeigt diese methodische Untersuchung, dass die shRNA im pSilencer-Vektor ein gutes und effektives Werkzeug ist, um Gen- und Proteinexpression örtlich zu reduzieren