Perspectives and Integration in SOLAS Science

Why a chapter on Perspectives and Integration in SOLAS Science in this book? SOLAS science by its nature deals with interactions that occur: across a wide spectrum of time and space scales, involve gases and particles, between the ocean and the atmosphere, across many disciplines including chemistry, biology, optics, physics, mathematics, computing, socio-economics and consequently interactions between many different scientists and across scientific generations. This chapter provides a guide through the remarkable diversity of cross-cutting approaches and tools in the gigantic puzzle of the SOLAS realm. Here we overview the existing prime components of atmospheric and oceanic observing systems, with the acquisition of ocean–atmosphere observables either from in situ or from satellites, the rich hierarchy of models to test our knowledge of Earth System functioning, and the tremendous efforts accomplished over the last decade within the COST Action 735 and SOLAS Integration project frameworks to understand, as best we can, the current physical and biogeochemical state of the atmosphere and ocean commons. A few SOLAS integrative studies illustrate the full meaning of interactions, paving the way for even tighter connections between thematic fields. Ultimately, SOLAS research will also develop with an enhanced consideration of societal demand while preserving fundamental research coherency. The exchange of energy, gases and particles across the air-sea interface is controlled by a variety of biological, chemical and physical processes that operate across broad spatial and temporal scales. These processes influence the composition, biogeochemical and chemical properties of both the oceanic and atmospheric boundary layers and ultimately shape the Earth system response to climate and environmental change, as detailed in the previous four chapters. In this cross-cutting chapter we present some of the SOLAS achievements over the last decade in terms of integration, upscaling observational information from process-oriented studies and expeditionary research with key tools such as remote sensing and modelling. Here we do not pretend to encompass the entire legacy of SOLAS efforts but rather offer a selective view of some of the major integrative SOLAS studies that combined available pieces of the immense jigsaw puzzle. These include, for instance, COST efforts to build up global climatologies of SOLAS relevant parameters such as dimethyl sulphide, interconnection between volcanic ash and ecosystem response in the eastern subarctic North Pacific, optimal strategy to derive basin-scale CO2 uptake with good precision, or significant reduction of the uncertainties in sea-salt aerosol source functions. Predicting the future trajectory of Earth’s climate and habitability is the main task ahead. Some possible routes for the SOLAS scientific community to reach this overarching goal conclude the chapter

Foraging behaviour and brain morphology in recently emerged brook charr, Salvelinus fontinalis

Recently emerged brook charr (Salvelinus fontinalis) foraging in still-water pools along the sides of streams are either active, feeding on insects from the upper portion of the water column away from the stream bank, or sedentary, feeding on crustaceans emerging from the hyporheic zone near the stream bank. We tested whether the frequency of movement displayed by individual brook charr searching for prey in the field was related to the relative volume of the telencephalon, a brain region involved with movement and space use in fishes. Movement of individuals searching for prey was quantified in the field, individuals were captured and volumes of the telencephalon and of the olfactory bulbs, a brain region neighbouring the telencephalon but not implicated in space use, were measured. Individuals with larger telencephalon volumes moved more frequently on average while searching for prey in the field than did individuals with smaller telencephalon volumes. The frequency of movement was unrelated to differences in the volume of the olfactory bulbs, suggesting that the relationship between telencephalon volume and movement was not a consequence of differences in overall brain size. Demonstrating a correlation between foraging behaviour and brain morphology for brook charr exhibiting different foraging tactics suggests that diversification in brain structure and function could be important aspects of the foraging specialization believed to occur during early stages in the evolution and development of resource polymorphisms. © 2010 Springer-Verlag

Characterization of rice mutants with enhanced susceptibility to rice blast

As a first step towards identifying genes involving in the signal transduction pathways mediating rice blast resistance, we isolated 3 mutants lines that showed enhanced susceptibility to rice blast KJ105 (91-033) from a T-DNA insertion library of the japonica rice cultivar, Hwayeong. Since none of the susceptible phenotypes co-segregated with the T-DNA insertion we adapted a map-based cloning strategy to isolate the gene(s) responsible for the enhanced susceptibility of the Hwayeong mutants. A genetic mapping population was produced by crossing the resistant wild type Hwayeong with the susceptible cultivar, Nagdong. Chi-square analysis of the F-2 segregating population indicated that resistance in Hwayeong was controlled by a single major gene that we tentatively named Pi-hy. Randomly selected susceptible plants in the F-2 population were used to build an initial map of Pi-hy. The SSLP marker RM2265 on chromosome 2 was closely linked to resistance. High resolution mapping using 105 F-2 plants revealed that the resistance gene was tightly linked, or identical, to Pib, a resistance gene with a nucleotide binding sequence and leucine-rich repeats (NB-LRR) previously isolated. Sequence analysis of the Pib locus amplified from three susceptible mutants revealed lesions within this gene, demonstrating that the Pi-hy gene is Pib. The Pib mutations in 1D-22-10-13, 1D-54-16-8, and 1C-143-16-1 were, respectively, a missense mutation in the conserved NB domain 3, a nonsense mutation in the 5th LRR, and a nonsense mutation in the C terminus following the LRRs that causes a small deletion of the C terminus. These findings provide evidence that NB domain 3 and the C terminus are required for full activity of the plant R gene. They also suggest that alterations of the resistance gene can cause major differences in pathogen specificity by affecting interactions with an avirulence factor.X112sciescopuskc

Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance

Rice Oryza sativa accelerated cell death and resistance 1 (OsACDR1) encodes a putative Raf-like mitogen-activated protein kinase kinase kinase (MAPKKK). We had previously reported upregulation of the OsACDR1 transcript by a range of environmental stimuli involved in eliciting defense-related pathways. Here we apply biochemical, gain and loss-of-function approaches to characterize OsACDR1 function in rice. The OsACDR1 protein showed autophosphorylation and possessed kinase activity. Rice plants overexpressing OsACDR1 exhibited spontaneous hypersensitive response (HR)-like lesions on leaves, upregulation of defense-related marker genes and accumulation of phenolic compounds and secondary metabolites (phytoalexins). These transgenic plants also acquired enhanced resistance to a fungal pathogen (Magnaporthe grisea) and showed inhibition of appressorial penetration on the leaf surface. In contrast, loss-offunction and RNA silenced OsACDR1 rice mutant plants showed downregulation of defense-related marker genes expressions and susceptibility to M. grisea. Furthermore, transient expression of an OsACDR1:GFP fusion protein in rice protoplast and onion epidermal cells revealed its localization to the nucleus. These results indicate that OsACDR1 plays an important role in the positive regulation of disease resistance in rice.X112537sciescopuskc

Unfamiliar stopover sites and the value of social information during migration

The better informed an individual, the better able to meet the demands of a variable environment. When a migratory bird stops over during passage, it must adjust to unfamiliar surroundings, satisfy nutritional demands, compete with other migrants and resident birds for limited resources, avoid predation, balance conflicting demands between predator avoidance and food acquisition, and often cope with unfavorable weather. A successful migration depends on solving these and other problems, the solutions to which are measured in units of time and condition. Migrants that gather reliable information about unfamiliar habitats in a timely fashion increase the likelihood of a successful migration. For example, a migrant may estimate food availability or predator pressure faster and more accurately by combining personal information gathered while sampling with social information obtained while observing the behavior of other migrants. In this paper, we provide a brief review of information use in the context of migratory stopover, a subject that has received little attention, and present preliminary results of an ongoing field investigation of the use of social information by migrants. Focal sampling of free-ranging and radio-tagged Nearctic-Neotropical passerine migrants in coastal habitat following flight across the Gulf of Mexico suggests that migrants respond to a lack of information by foraging in temporary feeding assemblages. This preference for flock foraging declines over the course of the stopover period in insectivorous migrants but persists in omnivorous birds, which suggests that the value of social information depends, in part, on a migrant\u27s foraging ecology. We argue that social foraging enables migrants to assess more fully unfamiliar environments during stopover, thereby reducing risks associated with lack of information