Comparative Analysis of Transcription Start Sites Using Mutual Information

The transcription start site (TSS) region shows greater variability compared with other promoter elements. We are interested to search for its variability by using information content as a measure. We note in this study that the variability is significant in the block of 5 nucleotides (nt) surrounding the TSS region compared with the block of 15 nt. This suggests that the actual region that may be involved is in the range of 5–10 nt in size. For Escherichia coli, we note that the information content from dinucleotide substitution matrices clearly shows a better discrimination, suggesting the presence of some correlations. However, for human this effect is much less, and for mouse it is practically absent. We can conclude that the presence of short-range correlations within the TSS region is species-dependent and is not universal. We further observe that there are other variable regions in the mitochondrial control element apart from TSS. It is also noted that effective comparisons can only be made on blocks, while single nucleotide comparisons do not give us any detectable signals

Blockchain-Enabled Authenticated Key Agreement Scheme for Mobile Vehicles-Assisted Precision Agricultural IoT Networks

Precision Farming Has a Positive Potential in the Agricultural Industry Regarding Water Conservation, Increased Productivity, Better Development of Rural Areas, and Increased Income. Blockchain Technology is a Better Alternative for Storing and Sharing Farm Data as It is Reliable, Transparent, Immutable, and Decentralized. Remote Monitoring of an Agricultural Field Requires Security Systems to Ensure that Any Sensitive Information is Exchanged Only among Authenticated Entities in the Network. to This End, We Design an Efficient Blockchain-Enabled Authenticated Key Agreement Scheme for Mobile Vehicles-Assisted Precision Agricultural Internet of Things (IoT) Networks Called AgroMobiBlock. the Limited Existing Work on Authentication in Agricultural Networks Shows Passive Usage of Blockchains with Very High Costs. AgroMobiBlock Proposes a Novel Idea using the Elliptic Curve Operations on an Active Hybrid Blockchain over Mobile Farming Vehicles with Low Computation and Communication Costs. Formal and Informal Security Analysis Along with the Formal Security Verification using the Automated Validation of Internet Security Protocols and Applications (AVISPA) Software Tool Have Shown the Robustness of AgroMobiBlock Against Man-In-The-Middle, Impersonation, Replay, Physical Capture, and Ephemeral Secret Leakage Attacks among Other Potential Attacks. the Blockchain-Based Simulation on Large-Scale Nodes Shows the Computational Time for an Increase in the Network and Block Sizes. Moreover, the Real-Time Testbed Experiments Have Been Performed to Show the Practical Usefulness of the Proposed Scheme

Seasonal intercomparison of observational rainfall datasets over India during the southwest monsoon season

The Indian monsoon is an important component of Earth's climate system, accurate forecasting of its mean rainfall being essential for regional food and water security. Accurate measurement of the rainfall is essential for various water-related applications, the evaluation of numerical models and detection and attribution of trends, but a variety of different gridded rainfall datasets are available for these purposes. In this study, six gridded rainfall datasets are compared against the India Meteorological Department (IMD) gridded rainfall dataset, chosen as the most representative of the observed system due to its high gauge density. The datasets comprise those based solely on rain gauge observations and those merging rain gauge data with satellite-derived products. Various skill scores and subjective comparisons are carried out for the Indian region during the south-west monsoon season (June to September). Relative biases and skill metrics are documented at all-India and sub-regional scales. In the gauge-based (land-only) category, Asian Precipitation-Highly-Resolved Observational Data Integration Towards Evaluation of water resources (APHRODITE) and Global Precipitation Climatology Center (GPCC) datasets perform better relative to the others in terms of a variety of skill metrics. In the merged category, the Global Precipitation Climatology Project (GPCP) dataset is shown to perform better than the Climate Prediction Center Merged Analysis of Precipitation (CMAP) for the Indian monsoon in terms of various metrics, when compared with the IMD gridded data. Most of the datasets have difficulty in representing rainfall over orographic regions including the Western Ghats mountains, in north-east India and the Himalayan foothills. The wide range of skill scores seen among the datasets and even the change of sign of bias found in some years are causes of concern. This uncertainty between datasets is largest in north-east India. These results will help those studying the Indian monsoon region to select an appropriate dataset depending on their application and focus of research

Proper acceleration, geometric tachyon and dynamics of a fundamental string near Dpp branes

We present a detailed analysis of our recent observation that the origin of the geometric tachyon, which arises when a D$p$-brane propagates in the vicinity of a stack of coincident NS5-branes, is due to the proper acceleration generated by the background dilaton field. We show that when a fundamental string (F-string), described by the Nambu-Goto action, is moving in the background of a stack of coincident D$p$-branes, the geometric tachyon mode can also appear since the overall conformal mode of the induced metric for the string can act as a source for proper acceleration. We also studied the detailed dynamics of the F-string as well as the instability by mapping the Nambu-Goto action of the F-string to the tachyon effective action of the non-BPS D-string. We qualitatively argue that the condensation of the geometric tachyon is responsible for the (F,D$p$) bound state formation.Comment: 26 pages, v2: added references, v3: one ref. updated, to appear in Class. and Quant. Gravit

Measurements of branching fraction ratios and CP-asymmetries in suppressed B^- -> D(-> K^+ pi^-)K^- and B^- -> D(-> K^+ pi^-)pi^- decays

We report the first reconstruction in hadron collisions of the suppressed decays B^- -> D(-> K^+ pi^-)K^- and B^- -> D(-> K^+ pi^-)pi^-, sensitive to the CKM phase gamma, using data from 7 fb^-1 of integrated luminosity collected by the CDF II detector at the Tevatron collider. We reconstruct a signal for the B^- -> D(-> K^+ pi^-)K^- suppressed mode with a significance of 3.2 standard deviations, and measure the ratios of the suppressed to favored branching fractions R(K) = [22.0 \pm 8.6(stat)\pm 2.6(syst)]\times 10^-3, R^+(K) = [42.6\pm 13.7(stat)\pm 2.8(syst)]\times 10^-3, R^-(K)= [3.8\pm 10.3(stat)\pm 2.7(syst]\times 10^-3, as well as the direct CP-violating asymmetry A(K) = -0.82\pm 0.44(stat)\pm 0.09(syst) of this mode. Corresponding quantities for B^- -> D(-> K^+ pi^-)pi^- decay are also reported.Comment: 8 pages, 1 figure, accepted by Phys.Rev.D Rapid Communications for Publicatio

Constraints on the χ_(c1) versus χ_(c2) polarizations in proton-proton collisions at √s = 8 TeV

The polarizations of promptly produced χ_(c1) and χ_(c2) mesons are studied using data collected by the CMS experiment at the LHC, in proton-proton collisions at √s=8  TeV. The χ_c states are reconstructed via their radiative decays χ_c → J/ψγ, with the photons being measured through conversions to e⁺e⁻, which allows the two states to be well resolved. The polarizations are measured in the helicity frame, through the analysis of the χ_(c2) to χ_(c1) yield ratio as a function of the polar or azimuthal angle of the positive muon emitted in the J/ψ → μ⁺μ⁻ decay, in three bins of J/ψ transverse momentum. While no differences are seen between the two states in terms of azimuthal decay angle distributions, they are observed to have significantly different polar anisotropies. The measurement favors a scenario where at least one of the two states is strongly polarized along the helicity quantization axis, in agreement with nonrelativistic quantum chromodynamics predictions. This is the first measurement of significantly polarized quarkonia produced at high transverse momentum