The genome sequence of the highly acetic acid-tolerant zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant

In this work, it is described the sequencing and annotation of the genome of the yeast strain ISA1307, isolated from a sparkling wine continuous production plant. This strain, formerly considered of the Zygosaccharomyces bailii species, has been used to study Z. bailii physiology, in particular, its extreme tolerance to acetic acid stress at low pH. The analysis of the genome sequence described in this work indicates that strain ISA1307 is an interspecies hybrid between Z. bailii and a closely related species. The genome sequence of ISA1307 is distributed through 154 scaffolds and has a size of around 21.2 Mb, corresponding to 96% of the genome size estimated by flow cytometry. Annotation of ISA1307 genome includes 4385 duplicated genes (~90% of the total number of predicted genes) and 1155 predicted single-copy genes. The functional categories including a higher number of genes are 'Metabolism and generation of energy', 'Protein folding, modification and targeting' and 'Biogenesis of cellular components'. The knowledge of the genome sequence of the ISA1307 strain is expected to contribute to accelerate systems-level understanding of stress resistance mechanisms in Z. bailii and to inspire and guide novel biotechnological applications of this yeast species/strain in fermentation processes, given its high resilience to acidic stress. The availability of the ISA1307 genome sequence also paves the way to a better understanding of the genetic mechanisms underlying the generation and selection of more robust hybrid yeast strains in the stressful environment of wine fermentations.This research was supported by FCT and FEDER through POFC-COMPETE [contracts PEst-OE/EQB/ LA0023/2011_ research line: Systems and Synthetic Biology PTDC/AGR-ALI/102608/2008, PEst-C/BIA/ UI4050/2011, and post-doctoral grant to M.P. (SFRH/BPD/73306/2010) and PhD grants to J.F.G. (SFRH/ BD/80065/2011) and F.C.R. (SFRH/BD/82226/2011)]. U.G. acknowledges the Austrian Science Fund (FWF, special research project F3705)

Guidance on Monitoring of Marine Litter in European Seas

This publication is a Reference Report by the Joint Research Centre of the European Commission.The MSFD Technical Subgroup on Marine Litter was tasked to deliver guidance so that European Member States could initiate programmes for monitoring of Descriptor 10 of the MSFD. The present document provides the recommendations and information needed to commence the monitoring required for marine litter, including methodological protocols and categories of items to be used for the assessment of litter on the Beach, Water Column, Seafloor and Biota, including a special section on Microparticles

First Assessment of the Impacts of the COVID-19 Pandemic on Global Marine Recreational Fisheries

This work is the result of an international research effort to determine the main impacts of the COVID-19 pandemic on marine recreational fishing. Changes were assessed on (1) access to fishing, derived from lockdowns and other mobility restrictions; (2) ecosystems, because of alterations in fishing intensity and human presence; (3) the blue economy, derived from alterations in the investments and expenses of the fishers; and (4) society, in relation to variations in fishers’ health and well-being. For this, a consultation with experts from 16 countries was carried out, as well as an international online survey aimed at recreational fishers, that included specific questions designed to capture fishers’ heterogeneity in relation to behavior, skills and know-how, and vital involvement. Fishers’ participation in the online survey (5,998 recreational fishers in 15 countries) was promoted through a marketing campaign. The sensitivity of the fishers’ clustering procedure, based on the captured heterogeneity, was evaluated by SIMPER analysis and by generalized linear models. Results from the expert consultation highlighted a worldwide reduction in marine recreational fishing activity. Lower human-driven pressures are expected to generate some benefits for marine ecosystems. However, experts also identified high negative impacts on the blue economy, as well as on fisher health and well-being because of the loss of recreational fishing opportunities. Most (98%) of the fishers who participated in the online survey were identified as advanced, showing a much higher degree of commitment to recreational fishing than basic fishers (2%). Advanced fishers were, in general, more pessimistic about the impacts of COVID-19, reporting higher reductions in physical activity and fish consumption, as well as poorer quality of night rest, foul mood, and raised more concerns about their health status. Controlled and safe access to marine recreational fisheries during pandemics would provide benefits to the health and well-being of people and reduce negative socioeconomic impacts, especially for vulnerable social groups.Versión del edito

Toward the integrated marine debris observing system

Plastics and other artificial materials pose new risks to the health of the ocean. Anthropogenic debris travels across large distances and is ubiquitous in the water and on shorelines, yet, observations of its sources, composition, pathways, and distributions in the ocean are very sparse and inaccurate. Total amounts of plastics and other man-made debris in the ocean and on the shore, temporal trends in these amounts under exponentially increasing production, as well as degradation processes, vertical fluxes, and time scales are largely unknown. Present ocean circulation models are not able to accurately simulate drift of debris because of its complex hydrodynamics. In this paper we discuss the structure of the future integrated marine debris observing system (IMDOS) that is required to provide long-term monitoring of the state of this anthropogenic pollution and support operational activities to mitigate impacts on the ecosystem and on the safety of maritime activity. The proposed observing system integrates remote sensing and in situ observations. Also, models are used to optimize the design of the system and, in turn, they will be gradually improved using the products of the system. Remote sensing technologies will provide spatially coherent coverage and consistent surveying time series at local to global scale. Optical sensors, including high-resolution imaging, multi- and hyperspectral, fluorescence, and Raman technologies, as well as SAR will be used to measure different types of debris. They will be implemented in a variety of platforms, from hand-held tools to ship-, buoy-, aircraft-, and satellite-based sensors. A network of in situ observations, including reports from volunteers, citizen scientists and ships of opportunity, will be developed to provide data for calibration/validation of remote sensors and to monitor the spread of plastic pollution and other marine debris. IMDOS will interact with other observing systems monitoring physical, chemical, and biological processes in the ocean and on shorelines as well as the state of the ecosystem, maritime activities and safety, drift of sea ice, etc. The synthesized data will support innovative multi-disciplinary research and serve a diverse community of users

Etifoxine improves peripheral nerve regeneration and functional recovery

Peripheral nerves show spontaneous regenerative responses, but recovery after injury or peripheral neuropathies (toxic, diabetic, or chronic inflammatory demyelinating polyneuropathy syndromes) is slow and often incomplete, and at present no efficient treatment is available. Using well-defined peripheral nerve lesion paradigms, we assessed the therapeutic usefulness of etifoxine, recently identified as a ligand of the translocator protein (18 kDa) (TSPO), to promote axonal regeneration, modulate inflammatory responses, and improve functional recovery. We found by histologic analysis that etifoxine therapy promoted the regeneration of axons in and downstream of the lesion after freeze injury and increased axonal growth into a silicone guide tube by a factor of 2 after nerve transection. Etifoxine also stimulated neurite outgrowth in PC12 cells, and the effect was even stronger than for specific TSPO ligands. Etifoxine treatment caused a marked reduction in the number of macrophages after cryolesion within the nerve stumps, which was rapid in the proximal and delayed in the distal nerve stumps. Functional tests revealed accelerated and improved recovery of locomotion, motor coordination, and sensory functions in response to etifoxine. This work demonstrates that etifoxine, a clinically approved drug already used for the treatment of anxiety disorders, is remarkably efficient in promoting acceleration of peripheral nerve regeneration and functional recovery. Its possible mechanism of action is discussed, with reference to the neurosteroid concept. This molecule, which easily enters nerve tissues and regulates multiple functions in a concerted manner, offers promise for the treatment of peripheral nerve injuries and axonal neuropathies

First Assessment of the Impacts of the COVID-19 Pandemic on Global Marine Recreational Fisheries

This work is the result of an international research effort to determine the main impacts of the COVID-19 pandemic on marine recreational fishing. Changes were assessed on (1) access to fishing, derived from lockdowns and other mobility restrictions; (2) ecosystems, because of alterations in fishing intensity and human presence; (3) the blue economy, derived from alterations in the investments and expenses of the fishers; and (4) society, in relation to variations in fishers’ health and well-being. For this, a consultation with experts from 16 countries was carried out, as well as an international online survey aimed at recreational fishers, that included specific questions designed to capture fishers’ heterogeneity in relation to behavior, skills and know-how, and vital involvement. Fishers’ participation in the online survey (5,998 recreational fishers in 15 countries) was promoted through a marketing campaign. The sensitivity of the fishers’ clustering procedure, based on the captured heterogeneity, was evaluated by SIMPER analysis and by generalized linear models. Results from the expert consultation highlighted a worldwide reduction in marine recreational fishing activity. Lower human-driven pressures are expected to generate some benefits for marine ecosystems. However, experts also identified high negative impacts on the blue economy, as well as on fisher health and well-being because of the loss of recreational fishing opportunities. Most (98%) of the fishers who participated in the online survey were identified as advanced, showing a much higher degree of commitment to recreational fishing than basic fishers (2%). Advanced fishers were, in general, more pessimistic about the impacts of COVID-19, reporting higher reductions in physical activity and fish consumption, as well as poorer quality of night rest, foul mood, and raised more concerns about their health status. Controlled and safe access to marine recreational fisheries during pandemics would provide benefits to the health and well-being of people and reduce negative socioeconomic impacts, especially for vulnerable social groups

First Assessment of the Impacts of the COVID-19 Pandemic on Global Marine Recreational Fisheries

This work is the result of an international research effort to determine the main impacts of the COVID-19 pandemic on marine recreational fishing. Changes were assessed on (1) access to fishing, derived from lockdowns and other mobility restrictions; (2) ecosystems, because of alterations in fishing intensity and human presence; (3) the blue economy, derived from alterations in the investments and expenses of the fishers; and (4) society, in relation to variations in fishers? health and well-being. For this, a consultation with experts from 16 countries was carried out, as well as an international online survey aimed at recreational fishers, that included specific questions designed to capture fishers? heterogeneity in relation to behavior, skills and know-how, and vital involvement. Fishers? participation in the online survey (5,998 recreational fishers in 15 countries) was promoted through a marketing campaign. The sensitivity of the fishers? clustering procedure, based on the captured heterogeneity, was evaluated by SIMPER analysis and by generalized linear models. Results from the expert consultation highlighted a worldwide reduction in marine recreational fishing activity. Lower human-driven pressures are expected to generate some benefits for marine ecosystems. However, experts also identified high negative impacts on the blue economy, as well as on fisher health and well-being because of the loss of recreational fishing opportunities. Most (98%) of the fishers who participated in the online survey were identified as advanced, showing a much higher degree of commitment to recreational fishing than basic fishers (2%). Advanced fishers were, in general, more pessimistic about the impacts of COVID-19, reporting higher reductions in physical activity and fish consumption, as well as poorer quality of night rest, foul mood, and raised more concerns about their health status. Controlled and safe access to marine recreational fisheries during pandemics would provide benefits to the health and well-being of people and reduce negative socioeconomic impacts, especially for vulnerable social groups.Fil: Pita, Pablo. Universidad de Santiago de Compostela; EspañaFil: Ainsworth, Gillian B.. Universidad de Santiago de Compostela; EspañaFil: Alba, Bernardino. Alianza de Pesca Española Recreativa Responsable; EspañaFil: Anderson, Antônio B.. Universidade Federal do Espírito Santo; BrasilFil: Antelo, Manel. Universidad de Santiago de Compostela; EspañaFil: Alós, Josep. Consejo Superior de Investigaciones Científicas. Instituto Mediterráneo de Estudios Avanzados; EspañaFil: Artetxe, Iñaki. No especifíca;Fil: Baudrier, Jérôme. Institut Français de Recherche Pour l’Exploitation de la Mer; FranciaFil: Castro, José J.. Universidad de Las Palmas de Gran Canaria; EspañaFil: Chicharro, Belén. No especifíca;Fil: Erzini, Karim. Universidad de Algarve; PortugalFil: Ferter, Keno. No especifíca;Fil: Freitas, Mafalda. No especifíca;Fil: García-de-la-Fuente, Laura. Universidad de Oviedo; EspañaFil: García Charton, José A.. Universidad de Murcia; EspañaFil: Giménez Casalduero, María. Universidad de Murcia; EspañaFil: Grau, Antoni M.. No especifíca;Fil: Diogo, Hugo. Universidade Dos Açores; Portugal. Direção de Serviços de Recursos; PortugalFil: Gordoa, Ana. No especifíca;Fil: Henriques, Filipe. Universidad de Algarve; Portugal. Universidad de Coimbra; PortugalFil: Hyder, Kieran. University of East Anglia; Reino UnidoFil: Jiménez Alvarado, David. Universidad de Las Palmas de Gran Canaria; EspañaFil: Karachle, Paraskevi K.. No especifíca;Fil: Lloret, Josep. Universidad de Girona; EspañaFil: Laporta, Martin. No especifíca;Fil: Lejk, Adam M.. No especifíca;Fil: Dedeu, Arnau L.. Consejo Superior de Investigaciones Científicas. Instituto de Ciencias del Mar; EspañaFil: Sosa, Martín Pablo. No especifíca;Fil: Martínez, Lllibori. No especifíca;Fil: Mira, Antoni M.. No especifíca;Fil: Morales Nin, Beatriz. Consejo Superior de Investigaciones Científicas. Instituto Mediterráneo de Estudios Avanzados; EspañaFil: Mugerza, Estanis. No especifíca;Fil: Olesen, Hans J.. Technical University of Denmark; DinamarcaFil: Papadopoulos, Anastasios. No especifíca;Fil: Pontes, João. Universidad de Algarve; PortugalFil: Pascual Fernández, José J.. Universidad de La Laguna; EspañaFil: Purroy, Ariadna. Consejo Superior de Investigaciones Científicas. Instituto de Ciencias del Mar; EspañaFil: Ramires, Milena. Santa Cecília University; BrasilFil: Rangel, Mafalda. Universidad de Algarve; PortugalFil: Reis Filho, José Amorim. Universidade Federal do Pará; BrasilFil: Sánchez Lizaso, Jose L.. Universidad de Alicante; EspañaFil: Sandoval, Virginia. Universidad de Murcia; EspañaFil: Sbragaglia, Valerio. Consejo Superior de Investigaciones Científicas. Instituto de Ciencias del Mar; EspañaFil: Silva, Luis. No especifíca;Fil: Skov, Christian. Technical University of Denmark; DinamarcaFil: Sola, Iván Daniel. Universidad de Alicante; España. Universidad de Playa Ancha; ChileFil: Strehlow, Harry V.. No especifíca;Fil: Torres, María A.. No especifíca;Fil: Ustups, Didzis. No especifíca;Fil: van der Hammen, Tessa. No especifíca;Fil: Veiga, Pedro. Universidad de Algarve; PortugalFil: Venerus, Leonardo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; ArgentinaFil: Verleye, Thomas. No especifíca;Fil: Villasante, Sebastián. Universidad de Santiago de Compostela; EspañaFil: Weltersbach, Marc Simon. No especifíca;Fil: Zarauz, Lucía. No especifíca

Primeira avaliação dos impactos da pandemia COVID-19 sobre pesca recreativa marinha global

In late 2019, an outbreak caused by a novel coronavirus started in China (Graham and Baric, 2020; Hu et al., 2020; Maxmen, 2021). A global pandemic was declared in March 2020, as COVID-19, the disease caused by the coronavirus (World Health Organization, 2020b), escalated outside China (World Health Organization, 2020a). In mid-2021, when vaccination campaigns began to show positive effects on the control of the disease in several countries (Kaur and Gupta, 2020), the COVID-19 pandemic caused millions of deaths and hundreds of millions of infections (Dong et al., 2020). To fight the pandemic, governments reacted with measures designed to contain the spread of the virus, especially through measures aimed to reduce social interactions, including lockdowns (Wilder-Smith and Freedman, 2020), travel restrictions (Chinazzi et al., 2020), and limiting people’s access to non-essential activities (Storr et al., 2021). Humanity suffered a notable impact as a result of the pandemic, including losses of jobs and an abrupt disruption in global demand of goods and services (Barua, 2020; McKibbin and Fernando, 2020; Nicola et al., 2020). The pandemic further degraded the quality of life of the most vulnerable people, particularly those with mental health problems (Brooks et al., 2020), victims of domestic violence (Usher et al., 2020), children (Singh et al., 2020), or indigenous populations (Lane, 2020). As a result, an increase in economic inequality and worldwide poverty is expected, especially in developing countries (World Bank, 2020), and a peak in the suicide rate (Kawohl and Nordt, 2020). On the other hand, global reduction of human activities has had some positive effects on the global environment, especially for air and water quality (Rutz et al., 2020), and noise reduction (Zambrano-Monserrate et al., 2020). Marine ecosystems for example experienced less impacts derived from commercial fishing due to disruptions in large markets such as the United States (White et al., 2021a) or the European Union (Prellezo and Carvahlo, 2020; Coll et al., 2021).info:eu-repo/semantics/publishedVersio