170 research outputs found
Molecular polymorphism, differentiation and introgression in the period gene between Lutzomyia intermedia and Lutzomyia whitmani
BACKGROUND: Lutzomyia intermedia and Lutzomyia whitmani (Diptera: Psychodidae) are important and very closely related vector species of cutaneous leishmaniasis in Brazil, which are distinguishable by a few morphological differences. There is evidence of mitochondrial introgression between the two species but it is not clear whether gene flow also occurs in nuclear genes. RESULTS: We analyzed the molecular variation within the clock gene period (per) of these two species in five different localities in Eastern Brazil. AMOVA and Fst estimates showed no evidence for geographical differentiation within species. On the other hand, the values were highly significant for both analyses between species. The two species show no fixed differences and a higher number of shared polymorphisms compared to exclusive mutations. In addition, some haplotypes that are "typical" of one species were found in some individuals of the other species suggesting either the persistence of old polymorphisms or the occurrence of introgression. Two tests of gene flow, one based on linkage disequilibrium and a MCMC analysis based on coalescence, suggest that the two species might be exchanging alleles at the per locus. CONCLUSION: Introgression might be occurring between L. intermedia and L. whitmani in period, a gene controlling behavioral rhythms in Drosophila. This result raises the question of whether similar phenomena are occurring at other loci controlling important aspects of behavior and vectorial capacity
Whole genome sequencing and methylome analysis of the wild guinea pig
Abstract Background: DNA methylation is a heritable mechanism that acts in response to environmental changes, lifestyle and diseases by influencing gene expression in eukaryotes. Epigenetic studies of wild organisms are mandatory to understand their role in e.g. adaptational processes in the great variety of ecological niches. However, strategies to address those questions on a methylome scale are widely missing. In this study we present such a strategy and describe a whole genome sequence and methylome analysis of the wild guinea pig
The era of reference genomes in conservation genomics
Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics
The Transcriptome of Lutzomyia longipalpis (Diptera: Psychodidae) Male Reproductive Organs
BACKGROUND: It has been suggested that genes involved in the reproductive biology of insect disease vectors are potential targets for future alternative methods of control. Little is known about the molecular biology of reproduction in phlebotomine sand flies and there is no information available concerning genes that are expressed in male reproductive organs of Lutzomyia longipalpis, the main vector of American visceral leishmaniasis and a species complex. METHODS/PRINCIPAL FINDINGS: We generated 2678 high quality ESTs ("Expressed Sequence Tags") of L. longipalpis male reproductive organs that were grouped in 1391 non-redundant sequences (1136 singlets and 255 clusters). BLAST analysis revealed that only 57% of these sequences share similarity with a L. longipalpis female EST database. Although no more than 36% of the non-redundant sequences showed similarity to protein sequences deposited in databases, more than half of them presented the best-match hits with mosquito genes. Gene ontology analysis identified subsets of genes involved in biological processes such as protein biosynthesis and DNA replication, which are probably associated with spermatogenesis. A number of non-redundant sequences were also identified as putative male reproductive gland proteins (mRGPs), also known as male accessory gland protein genes (Acps). CONCLUSIONS: The transcriptome analysis of L. longipalpis male reproductive organs is one step further in the study of the molecular basis of the reproductive biology of this important species complex. It has allowed the identification of genes potentially involved in spermatogenesis as well as putative mRGPs sequences, which have been studied in many insect species because of their effects on female post-mating behavior and physiology and their potential role in sexual selection and speciation. These data open a number of new avenues for further research in the molecular and evolutionary reproductive biology of sand flies
The Earth BioGenome Project 2020: Starting the clock
descripción no proporcionada por scopu
Transcriptome profiling of ontogeny in the acridid grasshopper Chorthippus biguttulus
Acridid grasshoppers (Orthoptera:Acrididae) are widely used model organisms
for developmental, evolutionary, and neurobiological research. Although there
has been recent influx of orthopteran transcriptomic resources, many use
pooled ontogenetic stages obscuring information about changes in gene
expression during development. Here we developed a de novo transcriptome
spanning 7 stages in the life cycle of the acridid grasshopper Chorthippus
biguttulus. Samples from different stages encompassing embryonic development
through adults were used for transcriptomic profiling, revealing patterns of
differential gene expression that highlight processes in the different life
stages. These patterns were validated with semi-quantitative RT-PCR. Embryonic
development showed a strongly differentiated expression pattern compared to
all of the other stages and genes upregulated in this stage were involved in
signaling, cellular differentiation, and organ development. Our study is one
of the first to examine gene expression during post-embryonic development in a
hemimetabolous insect and we found that only the fourth and fifth instars had
clusters of genes upregulated during these stages. These genes are involved in
various processes ranging from synthesis of biogenic amines to chitin binding.
These observations indicate that post-embryonic ontogeny is not a continuous
process and that some instars are differentiated. Finally, genes upregulated
in the imago were generally involved in aging and immunity. Our study
highlights the importance of looking at ontogeny as a whole and indicates
promising directions for future research in orthopteran development
The era of reference genomes in conservation genomics
Progress in genome sequencing
now enables the large-scale
generation of reference genomes.
Various international initiatives
aim to generate reference genomes
representing global biodiversity.
These genomes provide
unique insights into genomic diversity
and architecture, thereby enabling
comprehensive analyses
of population and functional
genomics, and are expected
to revolutionize conservation
genomics
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