The HemQ coprohaem decarboxylase generates reactive oxygen species: implications for the evolution of classical haem biosynthesis

Bacteria require a haem biosynthetic pathway for the assembly of a variety of protein complexes including cytochromes, peroxidases, globins, and catalase. Haem is synthesised via a series of tetrapyrrole intermediates including non-metallated porphyrins such as protoporphyrin IX, which is well-known to generate reactive oxygen species (ROS) in the presence of light and oxygen. Staphylococcus aureus has an ancient haem biosynthetic pathway that proceeds via the formation of coproporphyrin III, a less reactive porphyrin. Herein, we demonstrate for the first time that HemY of S. aureus is able to generate both protoporphyrin IX and coproporphyrin III, and that the terminal enzyme of this pathway, HemQ, can stimulate the generation of protoporphyrin IX (but not coproporphyrin III). Assays with hydrogen peroxide, horseradish peroxidase, superoxide dismutase, and catalase confirm that this stimulatory effect is mediated by superoxide. Structural modelling reveals that HemQ enzymes do not possess the structural attributes that are common to peroxidases that form compound I [FeIV=O]+, which taken together with the superoxide data leaves Fenton chemistry as a likely route for the superoxide-mediated stimulation of protoporphyrinogen IX oxidase activity of HemY. This generation of toxic free radicals could explain why HemQ enzymes have not been identified in organisms that synthesise haem via the classical protoporphyrin IX pathway. This work has implications for the divergent evolution of haem biosynthesis in ancestral microorganisms and provides new structural and mechanistic insights into a recently discovered oxidative decarboxylase reaction

High-bandwidth generation of duobinary and alternate-mark-inversion modulation formats using SOA-based signal processing

We report on the novel all-optical generation of duobinary (DB) and alternate-mark-inversion (AMI) modulation formats at 42.6 Gb/s from an input on-off keyed signal. The modulation converter consists of two semiconductor optical amplifier (SOA)-based Mach-Zehnder interferometer gates. A detailed SOA model numerically confirms the operational principles and experimental data shows successful AMI and DB conversion at 42.6 Gb/s. We also predict that the operational bandwidth can be extended beyond 40 Gb/s by utilizing a new pattern-effect suppression scheme, and demonstrate dramatic reductions in patterning up to 160 Gb/s. We show an increasing trade-off between pattern-effect reduction and mean output power with increasing bitrate

All-optical modulation converter for on-off keying to duobinary and alternate-mark inversion at 42.6 Gbps

Advanced modulation formats have become increasingly important as telecoms engineers strive for improved tolerance to both linear and nonlinear fibre-based transmission impairments. Two important modulation schemes are Duobinary (DB) and Alternate-mark inversion (AMI) [1] where transmission enhancement results from auxiliary phase modulation. As advanced modulation formats displace Return-to-zero On-Off Keying (RZ-OOK), inter-modulation converters will become increasingly important. If the modulation conversion can be performed at high bitrates with a small number of operations per bit, then all-optical techniques may offer lower energy consumption compared to optical-electronic-optical approaches. In this paper we experimentally demonstrate an all-optical system incorporating a pair of hybrid-integrated semiconductor optical amplifier (SOA)-based Mach-Zehnder interferometer (MZI) gates which translate RZ-OOK to RZ-DB or RZ-AMI at 42.6 Gbps. This scheme includes a wavelength conversion to arbitrary output wavelength and has potential for high-level photonic integration, scalability to higher bitrates, and should exhibit regenerative properties [2]

Relative Invertebrate Abundance and Biomass in Conservation Reserve Program Plantings in Northern Missouri

We measured relative invertebrate abundance, biomass, and diversity in Conservation Reserve Program (CRP) fields planted to red clover (Trifolium pratense)/timothy (Phleum pratense), timothy, orchard-grass (Dactylis glomerata), tall fescue (Festuca pratensis), warm-season grasses (big bluestem [Andropogon gerardi]/switch grass [Panicum virgatum]), orchard-grass/Korean lespedeza (Kummerowia stipu/,acea), and conventionally-tilled soybeans, to assess brood habitat quality for northern bobwhite (Colinus virginkinus). We sampled invertebrate populations by vacuuming along 3 15-m transects (4.56 m2/sample) within 4 fields of each planting type, at 2-week intervals from 1 July to 15 August 1990 and 1991. Invertebrate abundance and biomass were lowest in early August (P \u3c 0.05). The CRP fields planted to a red clover/timothy mixture, and dominated by red clover, had the highest levels of invertebrate abundance and biomass (P \u3c 0.05). Conventionally-tilled soybeans had lower invertebrate abundance and biomass than all CRP covertypes (P\u3c 0.05). Mean invertebrate abundance and biomass in CRP fields were 4 times that of soybean fields. In northern Missouri, CRP fields could provide quality brood habitat if structural characteristics are also consistent with brood foraging needs. Incorporation of a legume in CRP plantings may produce higher invertebrate densities and improve the value of these fields as brood habitat

Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product

The advent of heme during evolution allowed organisms possessing this compound to safely and efficiently carry out a variety of chemical reactions that otherwise were difficult or impossible. While it was long assumed that a single heme biosynthetic pathway existed in nature, over the past decade, it has become clear that there are three distinct pathways among prokaryotes, although all three pathways utilize a common initial core of three enzymes to produce the intermediate uroporphyrinogen III. The most ancient pathway and the only one found in the Archaea converts siroheme to protoheme via an oxygen-independent four-enzyme-step process. Bacteria utilize the initial core pathway but then add one additional common step to produce coproporphyrinogen III. Following this step, Gram-positive organisms oxidize coproporphyrinogen III to coproporphyrin III, insert iron to make coproheme, and finally decarboxylate coproheme to protoheme, whereas Gram-negative bacteria first decarboxylate coproporphyrinogen III to protoporphyrinogen IX and then oxidize this to protoporphyrin IX prior to metal insertion to make protoheme. In order to adapt to oxygen-deficient conditions, two steps in the bacterial pathways have multiple forms to accommodate oxidative reactions in an anaerobic environment. The regulation of these pathways reflects the diversity of bacterial metabolism. This diversity, along with the late recognition that three pathways exist, has significantly slowed advances in this field such that no single organism's heme synthesis pathway regulation is currently completely characterized

Distributed Cognition in Cancer Treatment Decision Making: An Application of the DECIDE Decision-Making Styles Typology

Distributed cognition occurs when cognitive and affective schemas are shared between two or more people during interpersonal discussion. Although extant research focuses on distributed cognition in decision making between health care providers and patients, studies show that caregivers are also highly influential in the treatment decisions of patients. However, there are little empirical data describing how and when families exert influence. The current article addresses this gap by examining decisional support in the context of cancer randomized clinical trial (RCT) decision making. Data are drawn from in-depth interviews with rural, Appalachian cancer patients (N = 46). Analysis of transcript data yielded empirical support for four distinct models of health decision making. The implications of these findings for developing interventions to improve the quality of treatment decision making and overall well-being are discussed

Distributed Cognition in Cancer Treatment Decision Making: An Application of the DECIDE Decision-Making Styles Typology

Distributed cognition occurs when cognitive and affective schemas are shared between two or more people during interpersonal discussion. Although extant research focuses on distributed cognition in decision making between health care providers and patients, studies show that caregivers are also highly influential in the treatment decisions of patients. However, there are little empirical data describing how and when families exert influence. The current article addresses this gap by examining decisional support in the context of cancer randomized clinical trial (RCT) decision making. Data are drawn from in-depth interviews with rural, Appalachian cancer patients (N = 46). Analysis of transcript data yielded empirical support for four distinct models of health decision making. The implications of these findings for developing interventions to improve the quality of treatment decision making and overall well-being are discussed

Design of a lunar propellant processing facility. NASA/USRA advanced program

Mankind's exploration of space will eventually lead to the establishment of a permanent human presence on the Moon. Essential to the economic viability of such an undertaking will be prudent utilization of indigenous lunar resources. The design of a lunar propellant processing system is presented. The system elements include facilities for ore processing, ice transportation, water splitting, propellant storage, personnel and materials transportation, human habitation, power generation, and communications. The design scenario postulates that ice is present in the lunar polar regions, and that an initial lunar outpost was established. Mining, ore processing, and water transportation operations are located in the polar regions. Water processing and propellant storage facilities are positioned near the equator. A general description of design operations is outlined below. Regolith containing the ice is mined from permanently-shaded polar craters. Water is separated from the ore using a microwave processing technique, and refrozen into projectiles for launch to the equatorial site via railgun. A mass-catching device retrieves the ice. This ice is processed using fractional distillation to remove impurities, and the purified liquid water is fed to an electrolytic cell that splits the water into vaporous hydrogen and oxygen. The hydrogen and oxygen are condensed and stored separately in a tank farm. Electric power for all operations is supplied by SP-100 nuclear reactors. Transportation of materials and personnel is accomplished primarily using chemical rockets. Modular living habitats are used which provide flexibility for the placement and number of personnel. A communications system consisting of lunar surface terminals, a lunar relay satellite, and terrestrial surface stations provides capabilities for continuous Moon-Moon and Moon-Earth transmissions of voice, picture, and data