A common coupling mechanism for A-type heme-copper oxidases from bacteria to mitochondria

Mitochondria metabolise almost all of the oxygen that we consume, reducing it to water by cytochrome c oxidase (CcO). CcO maximises energy capture into the protonmotive force by pumping protons across the mitochondrial inner membrane. Forty years after the H+/e- stoichiometry was established, a consensus has yet to be reached on the route taken by pumped protons to traverse CcO’s hydrophobic core and on whether bacterial and mitochondrial CcOs operate via the same coupling mechanism. To resolve this, we exploited the unique amenability to mitochondrial DNA mutagenesis of the yeast S. cerevisiae to introduce single point mutations in the hydrophilic pathways of CcO to test function. From ADP/O ratio measurements on preparations of intact mitochondria, we definitely established that the D-channel, and not the H-channel, is the proton pump of the yeast mitochondrial enzyme, supporting an identical coupling mechanism in all forms of the enzyme

Energy End-Use : Industry

The industrial sector accounts for about 30% of the global final energy use and accounts for about 115 EJ of final energy use in 2005. 1Cement, iron and steel, chemicals, pulp and paper and aluminum are key energy intensive materials that account for more than half the global industrial use. There is a shift in the primary materials production with developing countries accounting for the majority of the production capacity. China and India have high growth rates in the production of energy intensive materials like cement, fertilizers and steel (12–20%/yr). In different economies materials demand is seen to grow initially with income and then stabilize. For instance in industrialized countries consumption of steel seems to saturate at about 500 kg/capita and 400–500 kg/capita for cement. The aggregate energy intensities in the industrial sectors in different countries have shown steady declines – due to an improvement in energy efficiency and a change in the structure of the industrial output. As an example for the EU-27 the final energy use by industry has remained almost constant (13.4 EJ) at 1990 levels. Structural changes in the economies explain 30% of the reduction in energy intensity with the remaining due to energy efficiency improvements. In different industrial sectors adopting the best achievable technology can result in a saving of 10–30% below the current average. An analysis of cost cutting measures for motors and steam systems in 2005 indicates energy savings potentials of 2.2 EJ for motors and 3.3 EJ for steam. The payback period for these measures range from less than 9 months to 4 years. A systematic analysis of materials and energy flows indicates significant potential for process integration, heat pumps and cogeneration for example savings of 30% are seen in kraft, sulfite, dairy, chocolate, ammonia, and vinyl chloride. An exergy analysis (second law of thermodynamics) reveals that the overall global industry efficiency is only 30%. It is clear that there are major energy efficiency improvements possible through research and development (R&D) in next generation processes. A comparison of energy management policies in different countries and a summary of country experiences, program impacts for Brazil, China, India, South Africa shows the features of successful policies. Energy management International Organization for Standardization (ISO) standards are likely to be effective in facilitating industrial end use efficiency. The effective use of demand side management can be facilitated by combination of mandated measures and market strategies. A frozen efficiency scenario is constructed for industry in 2030. This implies a demand of final energy of 225 EJ in 2030. This involves an increase of the industrial energy output (in terms of Manufacturing Value Added (MVA)) by 95% over its 2005 value. Due to normal efficiency improvements the Business as Usual scenario results in a final energy demand of 175 EJ. The savings possibilities in motors and steam systems, process improvements, pinch, heat pumping and cogeneration have been computed for the existing industrial stock and for the new industries. An energy efficient scenario for 2030 has been constructed with a 95% increase in the industrial output with only a 17% increase in the final energy demand (total final energy demand for industry (135 EJ)). The total direct and indirect carbon dioxide emissions from the industry sector in 2005 is about 9.9 GtCO 2 . Assuming a constant carbon intensity of energy use, the business as usual scenario results in carbon dioxide (CO 2 ) emissions increasing to 17.8 GtCO 2 annually in 2030. In the energy efficient scenario this reduces to 11.6 GtCO 2 . Renewables account for 9% of the final energy of industry (10 EJ in 2005). If an aggressive renewables strategy resulting in an increase in renewable energy supply to 23% in 2030 is targeted (23 EJ), it is possible to have a scenario of constant greenhouse gas (GHG) emissions by the industrial sector (at 2005 levels) with a 95% increase in the industrial output. Several interventions will be required to achieve the energy efficient or constant GHG emission scenario. For the existing industry measures include developing capacity for systems assessment for motors, steam systems and pinch analysis, sharing and documentation of best practices, benchmarks and roadmaps for different industry segments, access to low interest finance etc. A new energy management standard has been developed by ISO for energy management in companies. Its adoption will enable industries to systematically monitor and track energy efficiency improvements. In order to level the playing field for energy efficiency a paradigm shift is required with the focus on energy services not on energy supply per se. This requires a re-orientation of energy supply, distribution companies and energy equipment manufacturing companies. Planning for next generation processes and systems needs the development of long term research agenda and strategic collaborations between industry, academic and research institutions and governments

Ecological monitoring of coral reefs in IFRECOR survey sites in Martinique between 2001 and 2006

Monitoring of coral reefs in Martinique started in 2001, after the first permanent IFRECOR survey site was created in the island. Four permanent transects of 60 m long are sampled twice a year during the dry and the wet season in the area. Benthic community cover and fish assemblages are assessed using scuba diving techniques. The benthic communities composition remained stable, while already degraded, until end 2005 with average coral cover values of 38.7 % over the Southern reef sites and 22.9 % on the Atlantic coast. The major bleaching event during the second semester of the year 2005 killed about 14 % of the coral colonies in Martinique. Beginning 2006, a disease outbreak also killed another 15 % of the corals, with signifi cant differences between species. Globally, although coral reef decline had started before these events, an average of 30 % of the coral reefs of Martinique disappeared during the past 2 years. Thereby, there was a decrease in the average coral cover down to 32.9 % (South Caribbean) and 14.8 % (Atlantic). No effect has been recorded yet on coral reef fi sh assemblages in terms of total biodiversity, individuals and biomass. Global climate change and anthropogenic pressures are principally involved in the coral reef ecological status in Martinique. Regional MPAs projects are under review and could be an environmental issue for coral reef protection and preservation in the futureLes récifs coralliens de Martinique font l'objet d'un suivi scientifique depuis 2001, date de création de la première station de référence IFRECOR dans le département. Progressivement 4 stations ont été mises en place sous la forme de transects permanents d'une longueur de 60 m et sont échantillonnées chaque année au cours des saisons sèche et humide. Le recouvrement par les communautés benthiques ainsi que la structure des peuplements ichtyologiques sont évalués à partir d'un protocole d'observation en plongée. Les communautés, bien que déjà dégradées, présentaient une stabilité relative jusque fin 2005, avec un taux de couverture moyen de 38,7 % du fond pour les sites coralliens du sud Caraïbe à 22,9 % sur la côte atlantique. L'épisode de blanchissement qui a touché l'ensemble de la Caraïbe au second semestre 2005 a entraîné une mortalité des colonies coralliennes évaluée à 14 %. Début 2006, le développement de maladies spécifiques des coraux a fait à nouveau chuter le taux de corail vivant de 15 %, avec des différences significatives selon les espèces. Globalement, bien que le déclin des récifs ait été amorcé bien avant ces événements majeurs, la perte en corail vivant sur les récifs de Martinique est évaluée à 30 % en moyenne au cours des deux dernières années. Ainsi les taux de couverture moyens en corail évalués au cours des deux suivis de l'année 2006 n'étaient plus que de 32,9 % à 14,8 % sur les mêmes sites respectifs. Aucun changement significatif dans la structure des peuplements de poissons (biodiversité totale, effectifs et biomasse) pris dans leur ensemble n'a été mis en évidence suite à ces changements écologiques. Le réchauffement climatique et les nombreuses pressions anthropiques qui s'exercent sur les côtes de l'île sont majoritairement responsables de cet état écologique. Des projets de réserves marines régionales sont en cours d'étude et devraient permettre de prendre des mesures efficaces de préservation des écosystèmes coralliens de la Martinique dans les années à venir

An adaptive inelastic magnetic mirror for Bose-Einstein condensates

We report the reflection and focussing of a Bose-Einstein condensate by a new pulsed magnetic mirror. The mirror is adaptive, inelastic, and of extremely high optical quality. The deviations from specularity are less than 0.5 mrad rms, making this the best atomic mirror demonstrated to date. We have also used the mirror to realize the analog of a beam-expander, producing an ultra-cold collimated fountain of matter wavesComment: 4 pages, 4 figure

PloS one

Down syndrome (DS) results from one extra copy of human chromosome 21 and leads to several alterations including intellectual disabilities and locomotor defects. The transchromosomic Tc1 mouse model carrying an extra freely-segregating copy of human chromosome 21 was developed to better characterize the relation between genotype and phenotype in DS. The Tc1 mouse exhibits several locomotor and cognitive deficits related to DS. In this report we analyzed the contribution of the genetic dosage of 13 conserved mouse genes located between Abcg1 and U2af1, in the telomeric part of Hsa21. We used the Ms2Yah model carrying a deletion of the corresponding interval in the mouse genome to rescue gene dosage in the Tc1/Ms2Yah compound mice to determine how the different behavioral phenotypes are affected. We detected subtle changes with the Tc1/Ms2Yah mice performing better than the Tc1 individuals in the reversal paradigm of the Morris water maze. We also found that Tc1/Ms2Yah compound mutants performed better in the rotarod than the Tc1 mice. This data support the impact of genes from the Abcg1-U2af1 region as modifiers of Tc1-dependent memory and locomotor phenotypes. Our results emphasize the complex interactions between triplicated genes inducing DS features

Structural studies provide new insights into the role of lysine acetylation on substrate recognition by CARM1 and inform the design of potent peptidomimetic inhibitors

Microbial Biotechnolog

The Sea State CCI dataset v1: towards a sea state climate data record based on satellite observations

Sea state data are of major importance for climate studies, marine engineering, safety at sea and coastal management. However, long-term sea state datasets are sparse and not always consistent, and sea state data users still mostly rely on numerical wave models for research and engineering applications. Facing the urgent need for a sea state climate data record, the Global Climate Observing System has listed “Sea State” as an Essential Climate Variable (ECV), fostering the launch in 2018 of the Sea State Climate Change Initiative (CCI). The CCI is a programme of the European Space Agency, whose objective is to realise the full potential of global Earth observation archives established by ESA and its member states in order to contribute to the ECV database. This paper presents the implementation of the first release of the Sea State CCI dataset, the implementation and benefits of a high-level denoising method, its validation against in situ measurements and numerical model outputs, and the future developments considered within the Sea State CCI project. The Sea State CCI dataset v1 is freely available on the ESA CCI website (http://cci.esa.int/data, last access: 25 August 2020) at ftp://anon-ftp.ceda.ac.uk/neodc/esacci/sea_state/data/v1.1_release/ (last access: 25 August 2020). Three products are available: a multi-mission along-track L2P product (http://dx.doi.org/ 10.5285/f91cd3ee7b6243d5b7d41b9beaf397e1, Piollé et al., 2020a), a daily merged multi mission along-track L3 product (http://dx.doi.org/10.5285/3ef6a5a66e9947d39b356251909dc12b, Piollé et al., 2020b) and a multimission monthly gridded L4 product (http://dx.doi.org/10.5285/47140d618dcc40309e1edbca7e773478, Piollé et al., 2020c)

Structure of yeast cytochrome c oxidase in a supercomplex with cytochrome bc1

Cytochrome c oxidase (complex IV, CIV) is known in mammals to exist independently or in association with other respiratory proteins to form supercomplexes (SCs). In Saccharomyces cerevisiae, CIV is found solely in a SC with cytochrome bc1 (complex III, CIII). Here, we present the cryo-EM structure of S. cerevisiae CIV in a III2IV2 SC at 3.3 Å resolution. While overall similarity to mammalian homologues is high, we found notable differences in the supernumerary subunits Cox26 and Cox13; the latter exhibits a unique arrangement that precludes CIV dimerization as seen in bovine. A conformational shift in the matrix domain of Cox5A – involved in allosteric inhibition by ATP – may arise from its association with CIII. The CIII–CIV arrangement highlights a conserved interaction interface of CIII, albeit one occupied by complex I in mammalian respirasomes. We discuss our findings in the context of the potential impact of SC formation on CIV regulation

Molecular Analysis of Precursor Lesions in Familial Pancreatic Cancer

PMCID: PMC3553106This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Coupling effects in the elastic scattering of 6^{6}He on 12^{12}C

To study the effect of the weak binding energy on the interaction potential between a light exotic nucleus and a target, elastic scattering of 6He at 38.3 MeV/nucleon on a 12C target was measured at Grand Accélérateur National d'Ions Lourds (GANIL). The 6He beam was produced by fragmentation. The detection of the scattered particles was performed by the GANIL spectrometer. The energy resolution was good enough to separate elastic from inelastic scattering contributions. The measured elastic data have been analyzed within the optical model, with the real part of the optical potential calculated in the double-folding model using a realistic density-dependent nucleon-nucleon interaction and the imaginary part taken in the conventional Woods-Saxon (WS) form. A failure of the "bare" real folded potential to reproduce the measured angular distribution over the whole angular range suggests quite a strong coupling of the higher-order breakup channels to the elastic channel. To estimate the strength of the breakup effects, a complex surface potential with a repulsive real part (designed to simulate the polarization effects caused by the projectile breakup) was added to the real folded and imaginary WS potentials. A realistic estimate of the polarization potential caused by the breakup of the weakly bound 6He was made based on a parallel study of 6He+12C and 6Li+12C optical potentials at about the same energies