329 research outputs found
LSA-PINN: Linear Boundary Connectivity Loss for Solving PDEs on Complex Geometry
We present a novel loss formulation for efficient learning of complex
dynamics from governing physics, typically described by partial differential
equations (PDEs), using physics-informed neural networks (PINNs). In our
experiments, existing versions of PINNs are seen to learn poorly in many
problems, especially for complex geometries, as it becomes increasingly
difficult to establish appropriate sampling strategy at the near boundary
region. Overly dense sampling can adversely impede training convergence if the
local gradient behaviors are too complex to be adequately modelled by PINNs. On
the other hand, if the samples are too sparse, existing PINNs tend to overfit
the near boundary region, leading to incorrect solution. To prevent such
issues, we propose a new Boundary Connectivity (BCXN) loss function which
provides linear local structure approximation (LSA) to the gradient behaviors
at the boundary for PINN. Our BCXN-loss implicitly imposes local structure
during training, thus facilitating fast physics-informed learning across entire
problem domains with order of magnitude sparser training samples. This LSA-PINN
method shows a few orders of magnitude smaller errors than existing methods in
terms of the standard L2-norm metric, while using dramatically fewer training
samples and iterations. Our proposed LSA-PINN does not pose any requirement on
the differentiable property of the networks, and we demonstrate its benefits
and ease of implementation on both multi-layer perceptron and convolutional
neural network versions as commonly used in current PINN literature.Comment: 11 pages, 7 figure
Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting.
UNLABELLED: Norovirus is a highly transmissible infectious agent that causes epidemic gastroenteritis in susceptible children and adults. Norovirus infections can be severe and can be initiated from an exceptionally small number of viral particles. Detailed genome sequence data are useful for tracking norovirus transmission and evolution. To address this need, we have developed a whole-genome deep-sequencing method that generates entire genome sequences from small amounts of clinical specimens. This novel approach employs an algorithm for reverse transcription and PCR amplification primer design using all of the publically available norovirus sequence data. Deep sequencing and de novo assembly were used to generate norovirus genomes from a large set of diarrheal patients attending three hospitals in Ho Chi Minh City, Vietnam, over a 2.5-year period. Positive-selection analysis and direct examination of protein changes in the virus over time identified codons in the regions encoding proteins VP1, p48 (NS1-2), and p22 (NS4) under positive selection and expands the known targets of norovirus evolutionary pressure. IMPORTANCE: The high transmissibility and rapid evolutionary rate of norovirus, combined with a short-lived host immune responses, are thought to be the reasons why the virus causes the majority of pediatric viral diarrhea cases. The evolutionary patterns of this RNA virus have been described in detail for only a portion of the virus genome and never for a virus from a detailed urban tropical setting. We provide a detailed sequence description of the noroviruses circulating in three Ho Chi Minh City hospitals over a 2.5-year period. This study identified patterns of virus change in known sites of host immune response and identified three additional regions of the virus genome under selection that were not previously recognized. In addition, the method described here provides a robust full-genome sequencing platform for community-based virus surveillance
Surface topography of hydroxyapatite affects ROS17/2.8 cells response
Hydroxyapatite (HA) has been used in orthopedic, dental, and maxillofacial surgery as a bone substitute.
The aim of this investigation was to study the effect of surface topography produced by the presence of microporosity on cell response, evaluating: cell attachment, cell morphology, cell proliferation, total protein content, and alkaline phosphatase (ALP) activity. HA discs with different percentages of microporosity (< 5%, 15%, and 30%) were confected by means of the combination of uniaxial powder pressing and different sintering conditions. ROS17/2.8 cells were cultured
on HA discs. For the evaluation of attachment, cells were cultured for two hours. Cell morphology was evaluated
after seven days. After seven and fourteen days, cell proliferation, total protein content, and ALP activity were measured. Data were compared by means of ANOVA and Duncan’s multiple range test, when appropriate. Cell attachment (p = 0.11) and total protein content (p = 0.31) were not affected by surface topography. Proliferation after 7 and 14 days (p = 0.0007 and p = 0.003, respectively), and ALP activity (p = 0.0007) were both significantly decreased by the most irregular surface (HA30). These results suggest that initial cell events were not affected by surface topography, while surfaces with more regular topography, as those present in HA with 15% or less of microporosity, favored intermediary and final events such as cell proliferation and ALP activity
Intra-anal imiquimod cream against human papillomavirus infection in men who have sex with men living with hiv: A single-arm, open-label pilot study
Men who have sex with men (MSM) living with HIV have a high prevalence and incidence of anal high-risk human papillomavirus (hrHPV) and anal cancer. We conducted an open-label, single-arm pilot study to examine the tolerability of imiquimod cream among MSM aged ≥18 years, living with HIV, who tested positive for anal hrHPV at Melbourne Sexual Health Centre between April 2018 and June 2020. We instructed men to apply 6.25 mg imiquimod intra-anally and peri-anally 3 doses per week for 16 weeks (period 1) and then one dose per week for a further 48 weeks (period 2). Twenty-seven MSM enrolled in period 1 and 24 (86%) applied at least 50% of doses. All men reported adverse events (AEs), including 39.5% grade 1, 39.5% grade 2, and 21% grade 3 AEs on at least one occasion. Eighteen MSM (67%) temporarily stopped using imiquimod during period 1, most commonly due to local AEs (n = 11) such as irritation and itching. Eighteen MSM continued in period 2 and all applied at least 50% of doses with no treatment-limiting AEs reported. Imiquimod 3 doses per week caused local AEs in most men and was not well tolerated. In contrast, once-a-week application was well tolerated over 48-weeks with no treatment-limiting AEs
Mid-infrared plasmons in scaled graphene nanostructures
Plasmonics takes advantage of the collective response of electrons to
electromagnetic waves, enabling dramatic scaling of optical devices beyond the
diffraction limit. Here, we demonstrate the mid-infrared (4 to 15 microns)
plasmons in deeply scaled graphene nanostructures down to 50 nm, more than 100
times smaller than the on-resonance light wavelength in free space. We reveal,
for the first time, the crucial damping channels of graphene plasmons via its
intrinsic optical phonons and scattering from the edges. A plasmon lifetime of
20 femto-seconds and smaller is observed, when damping through the emission of
an optical phonon is allowed. Furthermore, the surface polar phonons in SiO2
substrate underneath the graphene nanostructures lead to a significantly
modified plasmon dispersion and damping, in contrast to a non-polar
diamond-like-carbon (DLC) substrate. Much reduced damping is realized when the
plasmon resonance frequencies are close to the polar phonon frequencies. Our
study paves the way for applications of graphene in plasmonic waveguides,
modulators and detectors in an unprecedentedly broad wavelength range from
sub-terahertz to mid-infrared.Comment: submitte
Record Endurance for Single-Walled Carbon Nanotube–Based Memory Cell
We study memory devices consisting of single-walled carbon nanotube transistors with charge storage at the SiO2/nanotube interface. We show that this type of memory device is robust, withstanding over 105 operating cycles, with a current drive capability up to 10−6 A at 20 mV drain bias, thus competing with state-of-the-art Si-devices. We find that the device performance depends on temperature and pressure, while both endurance and data retention are improved in vacuum
University quality measurement model based on balanced scorecard
A Higher Education Institution (HEI) has the responsibility to track the processes through indicators that guarantee the measurement of the results in almost real time. This article presents the design of a management and quality model of the processes in a university, through the integration of a Balance Scorecard (BSC) and the implementation of an information system. For which it was required: a review of existing tracing and monitoring systems in the academic sector, definition of the requirements of the proposed technological, a diagnosis of the current measurement system of the HEI analyzed, identify measurement indicators and develop a technological tool. The designed model presents a precise and clear methodological guide that can be replicated in any HEI to monitor its processes
A survey of oral health in a Sudanese population
10.1186/1472-6831-12-5BMC Oral Health121
Tuberculosis associated with Mycobacterium tuberculosis Beijing and non-Beijing genotypes: a clinical and immunological comparison
BACKGROUND: The Mycobacterium tuberculosis Beijing genotype is biologically different from other genotypes. We aimed to clinically and immunologically compare human tuberculosis caused by Beijing and non-Beijing strains. METHODS: Pulmonary tuberculosis patients were prospectively enrolled and grouped by their M. tuberculosis genotypes. The clinical features, plasma cytokine levels, and cytokine gene expression levels in peripheral blood mononuclear cells (PBMC) were compared between the patients in Beijing and non-Beijing groups. RESULTS: Patients in the Beijing group were characterized by significantly lower frequency of fever (odds ratio, 0.12, p = 0.008) and pulmonary cavitation (odds ratio, 0.2, p = 0.049). Night sweats were also significantly less frequent by univariate analysis, and the duration of cough prior to diagnosis was longer in Beijing compared to non-Beijing groups (medians, 60 versus 30 days, p = 0.048). The plasma and gene expression levels of interferon (IFN) γ and interleukin (IL)-18 were similar in the two groups. However, patients in the non-Beijing group had significantly increased IL-4 gene expression (p = 0.018) and lower IFN-γ : IL-4 cDNA copy number ratios (p = 0.01). CONCLUSION: Patients with tuberculosis caused by Beijing strains appear to be less symptomatic than those who have disease caused by other strains. Th1 immune responses are similar in patients infected with Beijing and non-Beijing strains, but non-Beijing strains activate more Th2 immune responses compared with Beijing strains, as evidenced by increased IL-4 expression
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