159 research outputs found
Optical Magnetometry
Some of the most sensitive methods of measuring magnetic fields utilize
interactions of resonant light with atomic vapor. Recent developments in this
vibrant field are improving magnetometers in many traditional areas such as
measurement of geomagnetic anomalies and magnetic fields in space, and are
opening the door to new ones, including, dynamical measurements of bio-magnetic
fields, detection of nuclear magnetic resonance (NMR), magnetic-resonance
imaging (MRI), inertial-rotation sensing, magnetic microscopy with cold atoms,
and tests of fundamental symmetries of Nature.Comment: 11 pages; 4 figures; submitted to Nature Physic
Isotope effect on the transition temperature in Fe-based superconductors: the current status
The results of the Fe isotope effect (Fe-IE) on the transition temperature
obtained up to date in various Fe-based high temperature superconductors
are summarized and reanalyzed by following the approach developed in [Phys.
Rev. B 82, 212505 (2010)]. It is demonstrated that the very controversial
results for Fe-IE on are caused by small structural changes occurring
simultaneously with the Fe isotope exchange. The Fe-IE exponent on
[, is the isotope mass]
needs to be decomposed into two components with the one related to the
structural changes () and the genuine (intrinsic)
one (). The validity of such decomposition is
further confirmed by the fact that coincides with
the Fe-IE exponent on the characteristic phonon frequencies as is reported in recent EXAFS and Raman experiments.Comment: 7 pages, 4 figures. The paper is partially based on the results
published in [New J. Phys. 12, 073024 (2010) = arXiv:1002.2510] and [Phys.
Rev. B 82, 212505 (2010) = arXiv:1008.4540
Perturbative quantum gravity with the Immirzi parameter
We study perturbative quantum gravity in the first-order tetrad formalism.
The lowest order action corresponds to Einstein-Cartan plus a parity-odd term,
and is known in the literature as the Holst action. The coupling constant of
the parity-odd term can be identified with the Immirzi parameter of loop
quantum gravity. We compute the quantum effective action in the one-loop
expansion. As in the metric second-order formulation, we find that in the case
of pure gravity the theory is on-shell finite, and the running of Newton's
constant and the Immirzi parameter is inessential. In the presence of fermions,
the situation changes in two fundamental aspects. First, non-renormalizable
logarithmic divergences appear, as usual. Second, the Immirzi parameter becomes
a priori observable, and we find that it is renormalized by a four-fermion
interaction generated by radiative corrections. We compute its beta function
and discuss possible implications. The sign of the beta function depends on
whether the Immirzi parameter is larger or smaller than one in absolute value,
and the values plus or minus one are UV fixed-points (we work in Euclidean
signature). Finally, we find that the Holst action is stable with respect to
radiative corrections in the case of minimal coupling, up to higher order
non-renormalizable interactions.Comment: v2 minor amendment
A Database of Domain Definitions for Proteins with Complex Interdomain Geometry
Protein structural domains are necessary for understanding evolution and protein folding, and may vary widely from functional and sequence based domains. Although, various structural domain databases exist, defining domains for some proteins is non-trivial, and definitions of their domain boundaries are not available. Here, we present a novel database of manually defined structural domains for a representative set of proteins from the SCOP “multi-domain proteins” class. (http://prodata.swmed.edu/multidom/). We consider our domains as mobile evolutionary units, which may rearrange during protein evolution. Additionally, they may be visualized as structurally compact and possibly independently folding units. We also found that representing domains as evolutionary and folding units do not always lead to a unique domain definition. However, unlike existing databases, we retain and refine these “alternate” domain definitions after careful inspection of structural similarity, functional sites and automated domain definition methods. We provide domain definitions, including actual residue boundaries, for proteins that well known databases like SCOP and CATH do not attempt to split. Our alternate domain definitions are suitable for sequence and structure searches by automated methods. Additionally, the database can be used for training and testing domain delineation algorithms. Since our domains represent structurally compact evolutionary units, the database may be useful for studying domain properties and evolution
The Medical Genome Reference Bank contains whole genome and phenotype data of 2570 healthy elderly
Population health research is increasingly focused on the genetic determinants of healthy ageing, but there is no public resource of whole genome sequences and phenotype data from healthy elderly individuals. Here we describe the first release of the Medical Genome Reference Bank (MGRB), comprising whole genome sequence and phenotype of 2570 elderly Australians depleted for cancer, cardiovascular disease, and dementia. We analyse the MGRB for single-nucleotide, indel and structural variation in the nuclear and mitochondrial genomes. MGRB individuals have fewer disease-associated common and rare germline variants, relative to both cancer cases and the gnomAD and UK Biobank cohorts, consistent with risk depletion. Age-related somatic changes are correlated with grip strength in men, suggesting blood-derived whole genomes may also provide a biologic measure of age-related functional deterioration. The MGRB provides a broadly applicable reference cohort for clinical genetics and genomic association studies, and for understanding the genetics of healthy ageing
Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer
Hydroelastic optimization of a keel fin of a sailing boat: a multidisciplinary robust formulation for ship design
The paper presents a formulation for multidisciplinary design optimization of vessels, subject to uncertain operating conditions. The formulation couples the multidisciplinary design analysis with the Bayesian approach to decision problems affected by uncertainty. In the present context, the design specifications are no longer given in terms of a single operating design point, but in terms of probability density function of the operating scenario. The optimal configuration is that which maximizes the performance expectation over the uncertain parameters variation. In this sense, the optimal solution is “robust” within the stochastic scenario assumed. Theoretical and numerical issues are addressed and numerical results in the hydroelastic optimization of a keel fin of a sailing yacht are presented
Socio-cognitive determinants of consumers’ support for the fair trade movement
Despite the reasonable explanatory power of existing models of consumers’ ethical decision making, a large part of the process remains unexplained. This article draws on previous research and proposes an integrated model that includes measures of the theory of planned behavior, personal norms, self-identity, neutralization, past experience, and attitudinal ambivalence. We postulate and test a variety of direct and moderating effects in the context of a large survey with a representative sample of the U.K. population. Overall, the resulting model represents an empirically robust and holistic attempt to identify the most important determinants of consumers’ support for the fair-trade movement. Implications and avenues for further research are discussed
Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers
Correction to: Nature Genetics, published online 05 February 2020. In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium were listed in the Supplementary Information; however, these members should have been included in the main paper. The original Article has been corrected to include the members and affiliations of the PCAWG Consortium in the main paper; the corrections have been made to the HTML version of the Article but not the PDF version. Additional corrections to affiliations have been made to the PDF and HTML versions of the original Article for consistency of information between the PCAWG list and the main paper
Author Correction: The landscape of viral associations in human cancers
Correction to: Nature Genetics https://doi.org/10.1038/s41588-019-0558-9, published online 05 February 2020
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