New zoarcid fish species from deep-sea hydrothermal vents of the Atlantic

International Ridge-Crest Research: Biological Studies. Vol. 10(1): 15-1

New nemertean worms (Carcinonemertidae) on bythograeid crabs (Decapoda : Brachyura) from pacific hydrothermal vent sites

Several species of crabs from hydrothermal vent sites in the Pacific Ocean Were found to be infested by small, symbiotic nemertean worms. Worms occurred on both male and female crabs, and were located in mucous sheaths adhering to the axillae between the limbs of males and females, the setae of the pleopods of females, and the sterna of infested male and female crabs. Only juvenile and regressed adult worms were observed, primarily because no ovigerous hosts were examined. Similar species of worms mature by eating eggs, then regress or die after host eclosion. Based on the size of the worms from file vent crabs, their habitus with their crustacean hosts, the presence of accessory stylet pouches, and the presence of a single stylet on a large basis (monostiliferous), we place the worms in the family Carcinonemertidae, within the genus Ovicides. Infestations were found on crabs from vent sites on the western Pacific back-arc basins, on the southern East Pacific Ridge, and on the Pacific-Antarctic Ridge, indicating a widespread distribution of the symbioses. This represents the first record of Carcinonemertidae from a deep-sea host, a new host family, Bythograeidae, for these symbionts, as well as the first record of parasitism on a deep-sea bythograeid crab

A bacterial acetyltransferase triggers immunity in Arabidopsis thaliana independent of hypersensitive response

Type-III secreted effectors (T3Es) play critical roles during bacterial pathogenesis in plants. Plant recognition of certain T3Es can trigger defence, often accompanied by macroscopic cell death, termed the hypersensitive response (HR). Economically important species of kiwifruit are susceptible to Pseudomonas syringae pv. actinidiae (Psa), the causal agent of kiwifruit bacterial canker. Although Psa is non-pathogenic in Arabidopsis thaliana, we observed that a T3E, HopZ5 that is unique to a global outbreak clade of Psa, triggers HR and defence in Arabidopsis accession Ct-1. Ws-2 and Col-0 accessions are unable to produce an HR in response to Pseudomonas-delivered HopZ5. While Ws-2 is susceptible to virulent bacterial strain Pseudomonas syringae pv. tomato DC3000 carrying HopZ5, Col-0 is resistant despite the lack of an HR. We show that HopZ5, like other members of the YopJ superfamily of acetyltransferases that it belongs to, autoacetylates lysine residues. Through comparisons to other family members, we identified an acetyltransferase catalytic activity and demonstrate its requirement for triggering defence in Arabidopsis and Nicotiana species. Collectively, data herein indicate that HopZ5 is a plasma membrane-localized acetyltransferase with autoacetylation activity required for avirulence. ? 2017 The Author(s).115Ysciescopu

Occurrence of <i>Chromadorita regabi</i> sp. nov. (Nematoda: Adenophorea), a nematode egg predator of <i>Alvinocaris muricola</i> (Crustacea: Decapoda: Caridea: Alvinocarididae) from a deep cold seep area of the Gulf of Guinea

Several individuals belonging to a new species of the genus Chromadorita (Nematoda: Adenophorea) were collected in a cold-seep area in the Gulf of Guinea during two French cruises: BIOZÄIRE 2 (2001) and BIOZAÏRE 3 (2003–2004) on board the R/V L’Atalante. In this area, rich chemosynthetic benthic communities have been discovered at 3150 m depth in the large pockmark field named Regab. Chromadorita regabi sp. nov. was found among the eggs in ovigerous specimens of the shrimp Alvinocaris muricola. The combination of long size (1500–2200&nbsp;µm), nine strong preanal papillae and relatively small dorsal tooth with weak musculature distinguishes this species from all known congeneric ones. An identification key to all known species of Chromadorita is provided

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

Background: Next Generation Sequencing technologies have facilitated differential gene expression analysis through RNA-seq and Tag-seq methods. RNA-seq has biases associated with transcript lengths, lacks uniform coverage of regions in mRNA and requires 10–20 times more reads than a typical Tag-seq. Most existing Tag-seq methods either have biases or not high throughput due to use of restriction enzymes or enzymatic manipulation of 5’ ends of mRNA or use of RNA ligations.  Results: We have developed EXpression Profiling through Randomly Sheared cDNA tag Sequencing (EXPRSS) that employs acoustic waves to randomly shear cDNA and generate sequence tags at a relatively defined position (~150-200 bp) from the 3′ end of each mRNA. Implementation of the method was verified through comparative analysis of expression data generated from EXPRSS, NlaIII-DGE and Affymetrix microarray and through qPCR quantification of selected genes. EXPRSS is a strand specific and restriction enzyme independent tag sequencing method that does not require cDNA length-based data transformations. EXPRSS is highly reproducible, is high-throughput and it also reveals alternative polyadenylation and polyadenylated antisense transcripts. It is cost-effective using barcoded multiplexing, avoids the biases of existing SAGE and derivative methods and can reveal polyadenylation position from paired-end sequencing.  Conclusions: EXPRSS Tag-seq provides sensitive and reliable gene expression data and enables high-throughput expression profiling with relatively simple downstream analysis

Séance spécialisée : géodynamique des bassins océaniques et des marges continentales

Une morphologie de fonds sous-marins bathyaux comportant des indurations liées à des dépôts ferro-manganésifères inclus dans des sédiments hémipélagiques peu ou pas cimentés a été découverte sur une ride volcanique tertiaire au large de la Nouvelle-Calédonie (SW Pacifique). Elle semble être en relation avec des circulations hydrothermales au travers de la couverture sédimentaire pendant l'activité volcanique miocène de la ride des Loyauté. (Résumé d'auteur

The nuclear immune receptor RPS4 is required for RRS1SLH1-dependent constitutive defense activation in Arabidopsis thaliana

Plant nucleotide-binding leucine-rich repeat (NB-LRR) disease resistance (R) proteins recognize specific ‘‘avirulent’’ pathogen effectors and activate immune responses. NB-LRR proteins structurally and functionally resemble mammalian Nod-like receptors (NLRs). How NB-LRR and NLR proteins activate defense is poorly understood. The divergently transcribed Arabidopsis R genes, RPS4 (resistance to Pseudomonas syringae 4) and RRS1 (resistance to Ralstonia solanacearum 1), function together to confer recognition of Pseudomonas AvrRps4 and Ralstonia PopP2. RRS1 is the only known recessive NBLRR R gene and encodes a WRKY DNA binding domain, prompting suggestions that it acts downstream of RPS4 for transcriptional activation of defense genes. We define here the early RRS1-dependent transcriptional changes upon delivery of PopP2 via Pseudomonas type III secretion. The Arabidopsis slh1 (sensitive to low humidity 1) mutant encodes an RRS1 allele (RRS1SLH1) with a single amino acid (leucine) insertion in the WRKY DNA-binding domain. Its poor growth due to constitutive defense activation is rescued at higher temperature. Transcription profiling data indicate that RRS1SLH1-mediated defense activation overlaps substantially with AvrRps4- and PopP2-regulated responses. To better understand the genetic basis of RPS4/RRS1-dependent immunity, we performed a genetic screen to identify suppressor of slh1 immunity (sushi) mutants. We show that many sushi mutants carry mutations in RPS4, suggesting that RPS4 acts downstream or in a complex with RRS1. Interestingly, several mutations were identified in a domain C-terminal to the RPS4 LRR domain. Using an Agrobacterium-mediated transient assay system, we demonstrate that the P-loop motif of RPS4 but not of RRS1SLH1 is required for RRS1SLH1 function. We also recapitulate the dominant suppression of RRS1SLH1 defense activation by wild type RRS1 and show this suppression requires an intact RRS1 P-loop. These analyses of RRS1SLH1 shed new light on mechanisms by which NB-LRR protein pairs activate defense signaling, or are held inactive in the absence of a pathogen effector

Molecular Modeling of the Interaction Between Stem Cell Peptide and Immune Receptor in Plants

© Springer Science+Business Media, LLC, part of Springer Nature 2020. Molecular docking enables comprehensive exploration of interactions between chemical moieties and proteins. Modeling and docking approaches are useful to determine the three-dimensional (3D) structure of experimentally uncrystallized proteins and subsequently their interactions with various inhibitors and activators or peptides. Here, we describe a protocol for carrying out molecular modeling and docking of stem cell peptide CLV3p on plant innate immune receptor FLS2

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

Plant plasma membrane localized pattern recognition receptors (PRRs) detect extracellular pathogen-associated molecules. PRRs such as Arabidopsis EFR and rice XA21 are taxonomically restricted and are absent from most plant genomes. Here we show that rice plants expressing EFR or the chimeric receptor EFR::XA21, containing the EFR ectodomain and the XA21 intracellular domain, sense both Escherichia coli- and Xanthomonas oryzae pv. oryzae (Xoo)-derived elf18 peptides at sub-nanomolar concentrations. Treatment of EFR and EFR::XA21 rice leaf tissue with elf18 leads to MAP kinase activation, reactive oxygen production and defense gene expression. Although expression of EFR does not lead to robust enhanced resistance to fully virulent Xoo isolates, it does lead to quantitatively enhanced resistance to weakly virulent Xoo isolates. EFR interacts with OsSERK2 and the XA21 binding protein 24 (XB24), two key components of the rice XA21-mediated immune response. Rice-EFR plants silenced for OsSERK2, or overexpressing rice XB24 are compromised in elf18-induced reactive oxygen production and defense gene expression indicating that these proteins are also important for EFR-mediated signaling in transgenic rice. Taken together, our results demonstrate the potential feasibility of enhancing disease resistance in rice and possibly other monocotyledonous crop species by expression of dicotyledonous PRRs. Our results also suggest that Arabidopsis EFR utilizes at least a subset of the known endogenous rice XA21 signaling components