The whole mesh Deformation Model for 2D and 3D image segmentation

In this paper we present a novel approach for image segmentation using Active Nets and Active Volumes. Those solutions are based on the Deformable Models, with slight difference in the method for describing the shapes of interests - instead of using a contour or a surface they represented the segmented objects with a mesh structure, which allows to describe not only the surface of the objects but also to model their interiors. This is obtained by dividing the nodes of the mesh in two categories, namely internal and external ones, which will be responsible for two different tasks. In our new approach we propose to negate this separation and use only one type of nodes. Using that assumption we manage to significantly shorten the time of segmentation while maintaining its quality

Elastic properties of carbon nanotubes and their heterojunctions

Comprehensive studies on the modelling and numerical simulation of the mechanical behaviour under tension, bending and torsion of single-walled carbon nanotubes and their heterojunctions are performed. It is proposed to deduce the mechanical properties of the carbon nanotubes heterojunctions from the knowledge of the mechanical properties of the single-walled carbon nanotubes, which are their constituent key unit

The 2014 European electoral manifestos a preliminary analysis of the main competition dimensions

The European project has enjoyed considerable support from both elite and masses in Portugal. Since the country joined the EEC in 1986, the main political parties have been strong supporters of the Europe project. In recent years, however, this has been undermined by both political and economic crises. In this paper, we produce a preliminary analysis of the competition dimensions in the forthcoming 2014 European elections. We make an empirical analysis of the position held by the five most important Portuguese political parties in relation to European integration, the Euro, debt renegotiation, Eurobonds, and changes in pensions in a context that fosters contestation of European integration and its outputs.info:eu-repo/semantics/acceptedVersio

Extended whole mesh deformation model: Full 3D processing

Processing medical data has always been an interesting field that has shown the need for effective image segmentation methods. Modern medical image segmentation solutions are focused on 3D image volumes, which originate at advanced acquisition devices. Operating on such data in a 3D envi- ronment is essential in order to take the full advantage of the available information. In this paper we present an extended version of our 3D image segmentation and reconstruction model that belongs to the family of Deformable Models and is capable of processing large image volumes in competitive times and in fully 3D environment, offering a big level of automation of the process and a high precision of results. It is also capable of handling topology changes and offers a very good scalability on multi-processing unit architectures. We present a description of the model and show its capabilities in the field of medical image processing

The whole mesh deformation model: A fast image segmentation method suitable for effective parallelization

In this article, we propose a novel image segmentation method called the whole mesh deformation (WMD) model, which aims at addressing the problems of modern medical imaging. Such problems have raised from the combination of several factors: (1) significant growth of medical image volumes sizes due to increasing capabilities of medical acquisition devices; (2) the will to increase the complexity of image processing algorithms in order to explore new functionality; (3) change in processor development and turn towards multi processing units instead of growing bus speeds and the number of operations per second of a single processing unit. Our solution is based on the concept of deformable models and is characterized by a very effective and precise segmentation capability. The proposed WMD model uses a volumetric mesh instead of a contour or a surface to represent the segmented shapes of interest, which allows exploiting more information in the image and obtaining results in shorter times, independently of image contents. The model also offers a good ability for topology changes and allows effective parallelization of workflow, which makes it a very good choice for large datasets. We present a precise model description, followed by experiments on artificial images and real medical data

Amino acid sequence conservation and taxonomic distribution

Funding Information: FMS is recipient of fellowship by Fundação para a Ciência e a Tecnologia ( PD/BD/128213/2016 , within the scope of the PhD program Molecular Biosciences PD/00133/2012 ). The work was funded by Fundação para a Ciência e a Tecnologia ( PTDC/BIA-BQM/2599/2021 ). The project was supported by UIDB/04046/2020 and UIDP/04046/2020 Centre grants from FCT , Portugal (to BioISI), by LISBOA-01-0145-FEDER-007660 co-funded by FEDER through COMPETE2020-POCI. Publisher Copyright: © 2023 The Author(s)Pyruvate:quinone oxidoreductases (PQOs) catalyse the oxidative decarboxylation of pyruvate to acetate and concomitant reduction of quinone to quinol with the release of CO2. They are thiamine pyrophosphate (TPP) and flavin-adenine dinucleotide (FAD) containing enzymes, which interact with the membrane in a monotopic way. PQOs are considered as part of alternatives to most recognized pyruvate catabolizing pathways, and little is known about their taxonomic distribution and structural/functional relationship. In this bioinformatics work we tackled these gaps in PQO knowledge. We used the KEGG database to identify PQO coding genes, performed a multiple sequence analysis which allowed us to study the amino acid conservation on these enzymes, and looked at their possible cellular function. We observed that PQOS are enzymes exclusively present in prokaryotes with most of the sequences identified in bacteria. Regarding the amino acid sequence conservation, we found that 75 amino acid residues (out of 570, on average) have a conservation over 90 %, and that the most conserved regions in the protein are observed around the TPP and FAD binding sites. We systematized the presence of conserved features involved in Mg2+, TPP and FAD binding, as well as residues directly linked to the catalytic mechanism. We also established the presence of a new motif named “HEH lock”, possibly involved in the dimerization process. The results here obtained for the PQO protein family contribute to a better understanding of the biochemistry of these respiratory enzymes.publishersversionpublishe

β-lactam dosing in critical patients: a narrative review of optimal efficacy and the prevention of resistance and toxicity

© 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).Antimicrobial prescription in critically ill patients represents a complex challenge due to the difficult balance between infection treatment and toxicity prevention. Underexposure to antibiotics and therapeutic failure or, conversely, drug overexposure and toxicity may both contribute to a worse prognosis. Moreover, changes in organ perfusion and dysfunction often lead to unpredictable pharmacokinetics. In critically ill patients, interindividual and intraindividual real-time β-lactam antibiotic dose adjustments according to the patient's condition are critical. The continuous infusion of β-lactams and the therapeutic monitoring of their concentration have both been proposed to improve their efficacy, but strong data to support their use are still lacking. The knowledge of the pharmacokinetic/pharmacodynamic targets is poor and is mostly based on observational data. In patients with renal or hepatic failure, selecting the right dose is even more tricky due to changes in drug clearance, distribution, and the use of extracorporeal circuits. Intermittent usage may further increase the dosing conundrum. Recent data have emerged linking overexposure to β-lactams to central nervous system toxicity, mitochondrial recovery delay, and microbiome changes. In addition, it is well recognized that β-lactam exposure facilitates resistance selection and that correct dosing can help to overcome it. In this review, we discuss recent data regarding real-time β-lactam antibiotic dose adjustment, options in special populations, and the impacts on mitochondria and the microbiome.info:eu-repo/semantics/publishedVersio

Detection of new eruptions in the Magellanic Clouds LBVs R 40 and R 110

We performed a spectroscopic and photometric analysis to study new eruptions in two luminous blue variables (LBVs) in the Magellanic Clouds. We detected a strong new eruption in the LBV R40 that reached $V \sim 9.2$ in 2016, which is around $1.3$ mag brighter than the minimum registered in 1985. During this new eruption, the star changed from an A-type to a late F-type spectrum. Based on photometric and spectroscopic empirical calibrations and synthetic spectral modeling, we determine that R\,40 reached $T_{\mathrm{eff}} = 5800-6300$~K during this new eruption. This object is thereby probably one of the coolest identified LBVs. We could also identify an enrichment of nitrogen and r- and s-process elements. We detected a weak eruption in the LBV R 110 with a maximum of $V \sim 9.9$ mag in 2011, that is, around $1.0$ mag brighter than in the quiescent phase. On the other hand, this new eruption is about $0.2$ mag fainter than the first eruption detected in 1990, but the temperature did not decrease below 8500 K. Spitzer spectra show indications of cool dust in the circumstellar environment of both stars, but no hot or warm dust was present, except by the probable presence of PAHs in R\,110. We also discuss a possible post-red supergiant nature for both stars

Population expansion in the North African Late Pleistocene signalled by mitochondrial DNA haplogroup U6

Background <br/> The archaeology of North Africa remains enigmatic, with questions of population continuity versus discontinuity taking centre-stage. Debates have focused on population transitions between the bearers of the Middle Palaeolithic Aterian industry and the later Upper Palaeolithic populations of the Maghreb, as well as between the late Pleistocene and Holocene. <br/> Results Improved resolution of the mitochondrial DNA (mtDNA) haplogroup U6 phylogeny, by the screening of 39 new complete sequences, has enabled us to infer a signal of moderate population expansion using Bayesian coalescent methods. To ascertain the time for this expansion, we applied both a mutation rate accounting for purifying selection and one with an internal calibration based on four approximate archaeological dates: the settlement of the Canary Islands, the settlement of Sardinia and its internal population re-expansion, and the split between haplogroups U5 and U6 around the time of the first modern human settlement of the Near East. <br/> Conclusions <br/> A Bayesian skyline plot placed the main expansion in the time frame of the Late Pleistocene, around 20 ka, and spatial smoothing techniques suggested that the most probable geographic region for this demographic event was to the west of North Africa. A comparison with U6's European sister clade, U5, revealed a stronger population expansion at around this time in Europe. Also in contrast with U5, a weak signal of a recent population expansion in the last 5,000 years was observed in North Africa, pointing to a moderate impact of the late Neolithic on the local population size of the southern Mediterranean coast