An Analysis of Applications Development Systems for Remotely Sensed, Multispectral Data for the Earth Observations Division of the NASA Lyndon B. Johnson Space Center

An application development system (ADS) is examined for remotely sensed, multispectral data at the Earth Observations Division (EOD) at Johnson Space Center. Design goals are detailed, along with design objectives that an ideal system should contain. The design objectives were arranged according to the priorities of EOD's program objectives. Four systems available to EOD were then measured against the ideal ADS as defined by the design objectives and their associated priorities. This was accomplished by rating each of the systems on each of the design objectives. Utilizing the established priorities, it was determined how each system stood up as an ADS. Recommendations were made as to possible courses of action for EOD to pursue to obtain a more efficient ADS

Genome-wide changes accompanying knockdown of fatty acid synthase in breast cancer

<p>Abstract</p> <p>Background</p> <p>The lipogenic enzyme fatty acid synthase (FAS) is up-regulated in a wide variety of cancers, and is considered a potential metabolic oncogene by virtue of its ability to enhance tumor cell survival. Inhibition of tumor FAS causes both cell cycle arrest and apoptosis, indicating FAS is a promising target for cancer treatment.</p> <p>Results</p> <p>Here, we used gene expression profiling to conduct a global study of the cellular processes affected by siRNA mediated knockdown of FAS in MDA-MB-435 mammary carcinoma cells. The study identified 169 up-regulated genes (≥ 1.5 fold) and 110 down-regulated genes (≤ 0.67 fold) in response to knockdown of FAS. These genes regulate several aspects of tumor function, including metabolism, cell survival/proliferation, DNA replication/transcription, and protein degradation. Quantitative pathway analysis using Gene Set Enrichment Analysis software further revealed that the most pronounced effect of FAS knockdown was down-regulation in pathways that regulate lipid metabolism, glycolysis, the TCA cycle and oxidative phosphorylation. These changes were coupled with up-regulation in genes involved in cell cycle arrest and death receptor mediated apoptotic pathways.</p> <p>Conclusion</p> <p>Together these findings reveal a wide network of pathways that are influenced in response to FAS knockdown and provide new insight into the role of this enzyme in tumor cell survival and proliferation.</p

Framing the Environment: The Cornwall Alliance, Laissez-faire Environmentalism, and the Green Dragon

Religious discourse plays an important role in U.S. public debates on environmental policy. In this paper, we examine an aspect of this discourse, focusing on the discursive frame adopted by conservative evangelical elites as they promote religious interpretations of the environment distinct from more proenvironmental factions. Using qualitative document analysis of the Resisting the Green Dragon lectura series, sponsored by the Cornwall Alliance, we identify four key themes to this frame: (1) environmentalism is not science, (2) but a religion, (3) which threatens Christianity, and (4) personal and political freedom. These interrelated themes focus on denying or neutralizing scientific claims of environmental degradation, but also, and perhaps more importantly, counter moral claims advanced by more pro-environmental factions by linking a religious form of laissez-faire environmentalism to ethical considerations salient among evangelicals

Improving Mental Health Outcomes for Young Children Through the Implementation of the Primary Project

Primary Project (formerly known as Primary Mental Health Project) is one of the longest standing and wellestablished school-based preventative mental health interventions for addressing the social, emotional, behavioral, and learning needs of preschool through primary grade children. Existing now for over 60 years and building on its historical antecedents, this article describes the history, current state, and future implications of Primary Project. We discuss children’s mental health needs and the role of the school in addressing these needs. We present Primary Project’s current research efforts with a specific focus on University-community studies in Arkansas and Massachusetts. Implications for future research and school based counseling and policy and evaluation are addressed

\u3ci\u3eIn situ\u3c/i\u3e Synthesis of Oligonucleotide Arrays on Surfaces Coated with Crosslinked Polymer Multilayers

We report an approach to the in situ synthesis of oligonucleotide arrays on surfaces coated with crosslinked polymer multilayers. Our approach makes use of methods for the reactive layer-by-layer assembly of thin, amine-reactive multilayers using branched polyethyleneimine (PEI) and the azlactone-functionalized polymer poly(2-vinyl-4,4′-dimethylazlactone) (PVDMA). Postfabrication treatment of film-coated glass substrates with d-glucamine or 4-amino-1-butanol yielded hydroxyl-functionalized films suitable for the Maskless Array Synthesis (MAS) of oligonucleotide arrays. Glucamine-functionalized films yielded arrays of oligonucleotides with fluorescence intensities and signal-to-noise ratios (after hybridization with fluorescently labeled complementary strands) comparable to those of arrays fabricated on conventional silanized glass substrates. These arrays could be exposed to multiple hybridization/dehybridization cycles with only moderate loss of hybridization density. The versatility of the layer-by-layer approach also permitted synthesis directly on thin sheets of film-coated poly(ethylene terephthalate) (PET) to yield flexible oligonucleotide arrays that could be readily manipulated (e.g., bent) and cut into smaller arrays. To our knowledge, this work presents the first use of polymer multilayers as a substrate for the multistep synthesis of complex molecules. Our results demonstrate that these films are robust and able to withstand the ∼450 individual chemical processing steps associated with MAS (as well as manipulations required to hybridize, image, and dehybridize the arrays) without large-scale cracking, peeling, or delamination of the thin films. The combination of layer-by-layer assembly and MAS provides a means of fabricating functional oligonucleotide arrays on a range of different materials and substrates. This approach may also prove useful for the fabrication of supports for the solid-phase synthesis and screening of other macromolecular or small-molecule agents

Multiple-Methods Needs Assessment of California 4-H Science Education Programming

The California 4-H Science Leadership Team conducted a statewide assessment to evaluate the needs of county-based 4-H programs related to the key areas of the 4-H Science Initiative: program development and design, professional development, curricula, evaluation, partnerships, and fund development. The use of multiple qualitative data sources proved effective in identifying needs and gaps. Integrated findings provided evidence of institutionalization of 4-H Science; the assessment also revealed gaps that represent opportunities for future efforts and directions. Needs identified included intentional and systematic science programming, effective program models, professional development for staff, and consistency in messaging and branding

Practical Considerations in Cloud Utilization for the Science Gateway nanoHUB.org

nanoHUB.org is arguably the largest online nanotechnology user facility in the world. Just between July 2010 and June 2011 it served 177,823 users. 10,477 users ran 393,648 simulation jobs on a variety of computational resources ranging from HUBzero-based virtual execution hosts for rapid, interactive runs as well as grid-based resources for computationally-intense runs. We believe that as such our users experience a fully operational scientific “cloud”-based infrastructure even though it is not using “standard” computational cloud infrastructures such as EC2. In this paper we explore the use of standard computational cloud-based resources to determine whether they can deliver satisfactory outcomes for our users without requiring high personnel costs for configuration. In a science gateway environment, the assignment of jobs to the appropriate computational resource is not trivial. Resource availability, wait time, time to completion, and likelihood of job success must all be considered in order to transparently deliver an acceptable level of service to our users. In this paper, we present preliminary results examining the benefits and drawbacks of utilizing standard computational cloud resources as one potential venue for nanoHUB computational runs. In summary we find that cloud resources performed competitively with other grid resources in terms of wait time, CPU usage, and success in a multiple job submission strategy

Disease Ontology: improving and unifying disease annotations across species.

Model organisms are vital to uncovering the mechanisms of human disease and developing new therapeutic tools. Researchers collecting and integrating relevant model organism and/or human data often apply disparate terminologies (vocabularies and ontologies), making comparisons and inferences difficult. A unified disease ontology is required that connects data annotated using diverse disease terminologies, and in which the terminology relationships are continuously maintained. The Mouse Genome Database (MGD, http://www.informatics.jax.org), Rat Genome Database (RGD, http://rgd.mcw.edu) and Disease Ontology (DO, http://www.disease-ontology.org) projects are collaborating to augment DO, aligning and incorporating disease terms used by MGD and RGD, and improving DO as a tool for unifying disease annotations across species. Coordinated assessment of MGD\u27s and RGD\u27s disease term annotations identified new terms that enhance DO\u27s representation of human diseases. Expansion of DO term content and cross-references to clinical vocabularies (e.g. OMIM, ORDO, MeSH) has enriched the DO\u27s domain coverage and utility for annotating many types of data generated from experimental and clinical investigations. The extension of anatomy-based DO classification structure of disease improves accessibility of terms and facilitates application of DO for computational research. A consistent representation of disease associations across data types from cellular to whole organism, generated from clinical and model organism studies, will promote the integration, mining and comparative analysis of these data. The coordinated enrichment of the DO and adoption of DO by MGD and RGD demonstrates DO\u27s usability across human data, MGD, RGD and the rest of the model organism database community. Dis Model Mech 2018 Mar 12;11(3):dmm032839