Sampled in Pairs and Driven by Text: A New Graph Embedding Framework

In graphs with rich texts, incorporating textual information with structural information would benefit constructing expressive graph embeddings. Among various graph embedding models, random walk (RW)-based is one of the most popular and successful groups. However, it is challenged by two issues when applied on graphs with rich texts: (i) sampling efficiency: deriving from the training objective of RW-based models (e.g., DeepWalk and node2vec), we show that RW-based models are likely to generate large amounts of redundant training samples due to three main drawbacks. (ii) text utilization: these models have difficulty in dealing with zero-shot scenarios where graph embedding models have to infer graph structures directly from texts. To solve these problems, we propose a novel framework, namely Text-driven Graph Embedding with Pairs Sampling (TGE-PS). TGE-PS uses Pairs Sampling (PS) to improve the sampling strategy of RW, being able to reduce ~99% training samples while preserving competitive performance. TGE-PS uses Text-driven Graph Embedding (TGE), an inductive graph embedding approach, to generate node embeddings from texts. Since each node contains rich texts, TGE is able to generate high-quality embeddings and provide reasonable predictions on existence of links to unseen nodes. We evaluate TGE-PS on several real-world datasets, and experiment results demonstrate that TGE-PS produces state-of-the-art results on both traditional and zero-shot link prediction tasks.Comment: Accepted by WWW 2019 (The World Wide Web Conference. ACM, 2019

Measuring the flatness of focal plane for very large mosaic CCD camera

Large mosaic multiCCD camera is the key instrument for modern digital sky survey. DECam is an extremely red sensitive 520 Megapixel camera designed for the incoming Dark Energy Survey (DES). It is consist of sixty two 4k$\times$2k and twelve 2k x 2k 250-micron thick fully-depleted CCDs, with a focal plane of 44 cm in diameter and a field of view of 2.2 square degree. It will be attached to the Blanco 4-meter telescope at CTIO. The DES will cover 5000 square-degrees of the southern galactic cap in 5 color bands (g, r, i, z, Y) in 5 years starting from 2011. To achieve the science goal of constraining the Dark Energy evolution, stringent requirements are laid down for the design of DECam. Among them, the flatness of the focal plane needs to be controlled within a 60-micron envelope in order to achieve the specified PSF variation limit. It is very challenging to measure the flatness of the focal plane to such precision when it is placed in a high vacuum dewar at 173 K. We developed two image based techniques to measure the flatness of the focal plane. By imaging a regular grid of dots on the focal plane, the CCD offset along the optical axis is converted to the variation the grid spacings at different positions on the focal plane. After extracting the patterns and comparing the change in spacings, we can measure the flatness to high precision. In method 1, the regular dots are kept in high sub micron precision and cover the whole focal plane. In method 2, no high precision for the grid is required. Instead, we use a precise XY stage moves the pattern across the whole focal plane and comparing the variations of the spacing when it is imaged by different CCDs. Simulation and real measurements show that the two methods work very well for our purpose, and are in good agreement with the direct optical measurements.Comment: Presented at SPIE Conference,Ground-based and Airborne Instrumentation for Astronomy III, San Diego, 201

Developing an e-infrastructure for social science

We outline the aims and progress to date of the National Centre for e-Social Science e-Infrastructure project. We examine the challenges faced by the project, namely in ensuring outputs are appropriate to social scientists, managing the transition from research projects to service and embedding software and data within a wider infrastructural framework. We also provide pointers to related work where issues which have ramifications for this and similar initiatives are being addressed

A PERIOD3 variant causes a circadian phenotype and is associated with a seasonal mood trait.

In humans, the connection between sleep and mood has long been recognized, although direct molecular evidence is lacking. We identified two rare variants in the circadian clock gene PERIOD3 (PER3-P415A/H417R) in humans with familial advanced sleep phase accompanied by higher Beck Depression Inventory and seasonality scores. hPER3-P415A/H417R transgenic mice showed an altered circadian period under constant light and exhibited phase shifts of the sleep-wake cycle in a short light period (photoperiod) paradigm. Molecular characterization revealed that the rare variants destabilized PER3 and failed to stabilize PERIOD1/2 proteins, which play critical roles in circadian timing. Although hPER3-P415A/H417R-Tg mice showed a mild depression-like phenotype, Per3 knockout mice demonstrated consistent depression-like behavior, particularly when studied under a short photoperiod, supporting a possible role for PER3 in mood regulation. These findings suggest that PER3 may be a nexus for sleep and mood regulation while fine-tuning these processes to adapt to seasonal changes

The Nature of Angular Momentum Transport in Radiative Self-Gravitating Protostellar Discs

Semi-analytic models of self-gravitating discs often approximate the angular momentum transport generated by the gravitational instability using the phenomenology of viscosity. This allows the employment of the standard viscous evolution equations, and gives promising results. It is, however, still not clear when such an approximation is appropriate. This paper tests this approximation using high resolution 3D smoothed particle hydrodynamics (SPH) simulations of self-gravitating protostellar discs with radiative transfer. The nature of angular momentum transport associated with the gravitational instability is characterised as a function of both the stellar mass and the disc-to-star mass ratio. The effective viscosity is calculated from the Reynolds and gravitational stresses in the disc. This is then compared to what would be expected if the effective viscosity were determined by assuming local thermodynamic equilibrium or, equivalently, that the local dissipation rate matches the local cooling rate. In general, all the discs considered here settle into a self-regulated state where the heating generated by the gravitational instability is modulated by the local radiative cooling. It is found that low-mass discs can indeed be represented by a local "alpha-parametrisation", provided that the disc aspect ratio is small (H/R < 0.1) which is generally the case when the disc-to-star mass ratio q <0.5. However, this result does not extend to discs with masses approaching that of the central object. These are subject to transient burst events and global wave transport, and the effective viscosity is not well modelled by assuming local thermodynamic equilibrium. In spite of these effects, it is shown that massive (compact) discs can remain stable and not fragment, evolving rapidly to reduce their disc-to-star mass ratios through stellar accretion and radial spreading.Comment: 13 pages, 44 figures, accepted for publication in MNRA