Evidence for microbial iron reduction in the methanic sediments of the oligotrophic southeastern Mediterranean continental shelf

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vigderovich, H., Liang, L., Herut, B., Wang, F., Wurgaft, E., Rubin-Blum, M., & Sivan, O. Evidence for microbial iron reduction in the methanic sediments of the oligotrophic southeastern Mediterranean continental shelf. Biogeosciences, 16(16), (2019): 3165-3181, doi: 10.5194/bg-16-3165-2019.Dissimilatory iron reduction is probably one of the oldest types of metabolisms that still participates in important biogeochemical cycles, such as those of carbon and sulfur. It is one of the more energetically favorable anaerobic microbial respiration processes and is usually coupled to the oxidation of organic matter. Traditionally this process is thought to be limited to the shallow part of the sedimentary column in most aquatic systems. However, iron reduction has also been observed in the methanic zone of many marine and freshwater sediments, well below its expected zone and occasionally accompanied by decreases in methane, suggesting a link between the iron and the methane cycles. Nevertheless, the mechanistic nature of this link (competition, redox or other) has yet to be established and has not been studied in oligotrophic shallow marine sediments. In this study we present combined geochemical and molecular evidences for microbial iron reduction in the methanic zone of the oligotrophic southeastern (SE) Mediterranean continental shelf. Geochemical porewater profiles indicate iron reduction in two zones, the uppermost part of the sediment, and the deeper zone, in the layer of high methane concentration. Results from a slurry incubation experiment indicate that the deep methanic iron reduction is microbially mediated. The sedimentary profiles of microbial abundance and quantitative PCR (qPCR) of the mcrA gene, together with Spearman correlation between the microbial data and Fe(II) concentrations in the porewater, suggest types of potential microorganisms that may be involved in the iron reduction via several potential pathways: H2 or organic matter oxidation, an active sulfur cycle, or iron-driven anaerobic oxidation of methane. We suggest that significant upward migration of methane in the sedimentary column and its oxidation by sulfate may fuel the microbial activity in the sulfate methane transition zone (SMTZ). The biomass created by this microbial activity can be used by the iron reducers below, in the methanic zone of the sediments of the SE Mediterranean.This study was supported by the joint grant of Israel Science Foundation and the National Natural Science Foundation of China (ISF-NSFC) (grant numbers 31661143022 (FW) and 2561/16 (OS)). Funding was provided to Hanni Vigderovich by the Mediterranean Sea Research Center of Israel

DataSheet_1_Iron oxides impact sulfate-driven anaerobic oxidation of methane in diffusion-dominated marine sediments.pdf

Microbial iron (Fe) reduction by naturally abundant iron minerals has been observed in many anoxic aquatic sediments in the sulfidic and methanic zones, deeper than it is expected based on its energetic yield. However, the potential consequence of this “deep” iron reduction on microbial elemental cycles is still unclear in sediments where diffusion is the dominant transport process. In this contribution, we experimentally quantify the impact of iron oxides on sulfate-driven anaerobic oxidation of methane (S-AOM) within the sulfate methane transition zone (SMTZ) of marine diffusive controlled sediments. Sediments were collected from the oligotrophic Southeastern (SE) Mediterranean continental shelf and were incubated with 13C-labeled methane. We followed the conversion of 13C-labeled methane as a proxy of S-AOM and monitored the sediment response to hematite addition. Our study shows microbial hematite reduction as a significant process in the SMTZ, which appears to be co-occurring with S-AOM. Based on combined evidence from sulfur and carbon isotopes and functional gene analysis, the reduction of hematite seems to slow down S-AOM. This contrasts with methane seep environments, where iron oxides appear to stimulate S-AOM and hence attenuate the release of the greenhouse gas methane from the sediments. In the deep methanic zone, the addition of iron oxides inhibits the methanogenesis process and hence methane gas production. The inhibition effect deeper in the sediment is not related to Fe-AOM as a competing process on the methane substrate, since Fe-AOM was not observed throughout the methanic sediments with several iron oxides additions.</p

Isolation of a Novel Thermophilic Methanogen and the Evolutionary History of the Class Methanobacteria

Methanogens can produce methane in anaerobic environments via the methanogenesis pathway, and are regarded as one of the most ancient life forms on Earth. They are ubiquitously distributed across distinct ecosystems and are considered to have a thermophilic origin. In this study, we isolated, pure cultured, and completely sequenced a single methanogen strain DL9LZB001, from a hot spring at Tengchong in Southwest China. DL9LZB001 is a thermophilic and hydrogenotrophic methanogen with an optimum growth temperature of 65 &deg;C. It is a putative novel species, which has been named Methanothermobacter tengchongensis&mdash;a Class I methanogen belonging to the class Methanobacteria. Comparative genomic and ancestral analyses indicate that the class Methanobacteria originated in a hyperthermal environment and then evolved to adapt to ambient temperatures. This study extends the understanding of methanogens living in geothermal niches, as well as the origin and evolutionary history of these organisms in ecosystems with different temperatures